From: <pcb...@us...> - 2011-07-14 00:48:13
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Revision: 5448 http://sashimi.svn.sourceforge.net/sashimi/?rev=5448&view=rev Author: pcbrefugee Date: 2011-07-14 00:48:06 +0000 (Thu, 14 Jul 2011) Log Message: ----------- [pentunia] added a link on the PepC page to the PepC paper, which is now on PubMed Modified Paths: -------------- trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl Modified: trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl =================================================================== --- trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl 2011-07-14 00:38:50 UTC (rev 5447) +++ trunk/trans_proteomic_pipeline/CGI/tpp_gui/tpp_gui.pl 2011-07-14 00:48:06 UTC (rev 5448) @@ -149,7 +149,7 @@ 'chargefile' , 'Create charge file', 'mergecharges' , 'Merge charges into mzXML', 'runqualscore' , 'Run QualScore', - 'runpepc' , 'Run Pepc', + 'runpepc' , 'Run PepC', 'runspectrast' , 'Run SpectraST', 'runtandem' , 'Run Tandem Search', 'fetchlibs' , 'Download Selected Libraries', @@ -4526,7 +4526,7 @@ lib2html => ['Lib2HTML','Convert SpectraST libs to user-browsable HTML'], marimba => ['MaRiMba','Create transition lists for S/MRM experiments using spectral libraries'], qualscore => ['QualScore','Extract high-quality, unassigned spectra from a TPP experiment'], - pepc => ['Pepc','Pepc Statistical Peptide Counting'], + pepc => ['PepC','PepC Statistical Peptide Counting'], ); print "<table width='100%'><tr><td>\n"; @@ -5250,6 +5250,15 @@ # ######################################################################## sub pagePepc { + print + "<p>Please click ", + a({-href => "http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881356/", + -target=> "_blank"}, + "here"), + " to read about PepC: proteomics software for identifying differentially expressed +proteins based on spectral counting.", + "</p></div>\n"; + # files to process (from session) my $files_a = &showFiles('a_pepc','pepc','xml','1. Choose files (runs) for group A'); my $files_b = &showFiles('b_pepc','pepc','xml','2. Choose files (runs) for group B'); @@ -5280,7 +5289,7 @@ print br, - &printTitle(title=>"4. Run Pepc"), + &printTitle(title=>"4. Run PepC"), "<div class=formentry>"; if ($files_a && $files_b) { This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |