[Sashimi-commit] SF.net SVN: sashimi:[4485] trunk/trans_proteomic_pipeline/src/Parsers/ Algorithm2XML/pICalculator.cxx

[<ds...@us...>]

Revision: 4485
          http://sashimi.svn.sourceforge.net/sashimi/?rev=4485&view=rev
Author:   dshteyn
Date:     2009-07-20 21:22:25 +0000 (Mon, 20 Jul 2009)

Log Message:
-----------
Limit range of pI z-scores to model from -10 to 10

Modified Paths:
--------------
    trunk/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/pICalculator.cxx

Modified: trunk/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/pICalculator.cxx
===================================================================
--- trunk/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/pICalculator.cxx	2009-07-20 21:20:50 UTC (rev 4484)
+++ trunk/trans_proteomic_pipeline/src/Parsers/Algorithm2XML/pICalculator.cxx	2009-07-20 21:22:25 UTC (rev 4485)
@@ -285,6 +285,13 @@
   //if (run_pI_stddev_ <= 0.05) run_pI_stddev_ = 0.5;
  
   double rtn = (pI - run_pI_mean_) / run_pI_stddev_;
+  if (rtn > 10) {
+    rtn = 10;
+  }
+
+  if (rtn < -10) {
+    rtn = -10;
+  }
   //  cout << "peptide seq: " << pep << " pI: " << pI << " Score: " << rtn <<endl;
   return rtn;
   


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