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From: Wout B. <wou...@ua...> - 2023-03-14 21:49:31
|
Dear colleagues, We have our next teleconference tomorrow, Wednesday March 15, at 16h00 CET (8h00 PST, 15h00 GMT, 17h00 SAST). Note that this is one hour later than usual for the US due to differing DST switch. You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023>: Updates? * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>. * mzQC repository: Please consult the open issues on GitHub<https://github.com/HUPO-PSI/mzQC/issues> prior to the meeting. * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>. Best, Wout |
From: Sylvie R. <syl...@un...> - 2023-03-03 22:16:05
|
Dear colleagues, dear members of the HUPO-PSI community, The HUPO Proteomics Standards Initiative (PSI) develops standards for documentation and storage of Proteomics data (see http://www.psidev.info for an overview of activities). The Mass Spectrometry and Proteomics Informatics PSI working groups have submitted a new recommendation, the PSI Peak Annotation Format (mzPAF) consideration and review as a PSI standard. This document presents a specification for a fragment ion peak annotation format for mass spectra, focused on peptides. This provides a standardized format for describing the origin of fragment ions to be used in spectral libraries, other formats that aim to describe fragment ions, and software tools that annotate fragment ions. After having passed a 14-day review of the PSI steering group and having been revised as requested by the internal reviewers, the proposed document, Draft 10 of Version 1.0, now goes through the 45-day public and external review until *April 18th, 2023*. The current draft specification (.docx) is attached to this e-mail. Further information, including any updates to this document, implementations, and examples is available in the GitHub repository: https://github.com/HUPO-PSI/mzPAF and at https://psidev.info/mzPAF. This message is to encourage you to contribute to the standards development activity by commenting on the document. We invite both positive and negative comments on the relevance, correctness, clarity and appropriateness of the specification (e.g. is it presented in accordance with the templates and clearly written, is it sufficiently detailed and comprehensively described and are the examples in agreement with the specification?). Comments can be made on the specification as a whole or on specific parts. If you do not feel experienced enough to comment on this document, but know colleagues who are, please feel free to forward this message to them. There is no requirement that people commenting should have had any prior contact with the PSI. Please send comments by e-mail directly to syl...@un... before*April 18th, 2023*. Thank you very much in advance for your valuable help. Best regards. Professor Sylvie RICARD-BLUM - PSI Editor Pericellular and Extracellular Supramolecular Assemblies UMR 5246 CNRS - University Lyon 1 Institute of Molecular and Supramolecular Chemistry and Biochemistry University Claude Bernard Lyon 1, 43 Boulevard du 11 novembre 1918 69622 Villeurbanne Cedex, France Phone: +33(0)4 72 44 82 32 E-mail: syl...@un... |
From: Wout B. <wou...@ua...> - 2023-03-01 11:42:38
|
Dear colleagues, We have our next teleconference today, Wednesday March 1, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023> * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>. * Document process<https://drive.google.com/drive/folders/1IfXpzuiVPRjFVaRYfRgVLmH6Kkytu9Df>: status check if necessary. * mzQC repository: GitHub issues<https://github.com/HUPO-PSI/mzQC/issues> status check. * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>. Best, Wout |
From: Tenzer, S. <te...@un...> - 2023-02-06 11:55:42
|
Hi Dave, Hi everyone, I am very sorry for the long silence and deeply apologize for not being available as I had planned to be, as my workload here in Mainz exploded in a way that i had not foreseen. I agree that under these circumstances, it does not make sense to have me listed as a co-chair, so I am very happy to pass that role to Wout. Looking forward to see the future process of qcML! Best wishes, Stefan Am 06.04.2021 um 08:54 schrieb David TABB <dav...@pa...<mailto:dav...@pa...>>: Hi, folks. I really enjoyed talking with you at the HUPO-PSI spring meeting! The steering committee is trying to ensure that the websites for individual work groups are still up-to-date. In looking at ours (https://www.psidev.info/groups/quality-control), I have the following comments and suggestions: 1. “View Documents” at the top points to the PSI file collection rather than our GitHub. 2. Under “Focus and Purpose” we specify that we have industry researchers, journal representatives, and instrument manufacturers represented in our team. Has that ever been true? 3. The “Current Projects” section specifies our development of qcML (sic). Similarly our second though sixth points in “Goals/Milestones” specify development of qcML. 4. Stefan Tenzer is listed as a co-chair, but I think it has been more than a year since our last contact, yes? 5. “Formats, Definitions and Metrics” highlights qcML again. When the PSI-SC removed the “Secretary” column from “Roles and Responsibilities” (https://www.psidev.info/roles) it was to move Wout Bittremieux’s name to co-chair, replacing Stefan Tenzer’s name. I see that “Secretary” vanished, but that removed Wout’s name entirely! Mathias, the page lists you as our website maintainer. Would you coordinate with Chuqiao Gong to update this information? Thanks, Dave _______________________________________________ Psidev-qc-dev mailing list Psi...@li...<mailto:Psi...@li...> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
From: Wout B. <wou...@ua...> - 2023-02-01 10:21:39
|
Dear colleagues, Due to conflicting meetings we will not have a call today. Asynchronous communication can proceed on Slack. Best, Wout |
From: Bittremieux, W. <wbi...@he...> - 2023-02-01 08:47:01
|
Dear colleagues, Due to conflicting meetings we will not have a call today. Asynchronous communication can proceed on Slack. Best, Wout |
From: walzer <wa...@eb...> - 2023-01-18 14:24:23
|
Hej Julian, basically just arrived back from holiday, so let me chime in here a little late. Thank you, it has been a pleasure working with you, all the best with the new position and let's hope our paths cross again! cheers, mths On 2023-01-15 13:42, David TABB wrote: > Hi, Julian. > > I entirely agree with Wout. Your contributions over the last few > years have been key to our success. Thank you for all your work with > the CV, and we will also miss your company on our calls! > > Natasha and I have moved back home to Cape Town at the start of this > year. At the moment, we don’t even have reliable network > connectivity at the house, so I am able to check my mail quite rarely. > We hope to get that link fixed in the coming week. > > Thank you again! > > Dave > > From: Bittremieux, Wout via Psidev-qc-dev > <psi...@li...> > Sent: Wednesday, 11 January 2023 15:55 > To: Psidev-qc-dev <psi...@li...>; Julian > Uszkoreit <jul...@ru...> > Subject: Re: [Psidev-qc-dev] Retirement from mzQC development and best > wishes > > Hi Julian, > > I think I speak for the entire group when I say that it was an > absolute pleasure to work with you for all those years! Lots of > problems to solve in medical bioinformatics as well, so I don't think > you'll be bored. 😉 > > We'll continue to make progress on the mzQC manuscript. I'm hopeful > we'll have a nice end result soon, so we'll reach out for that in the > near future. > > Best of luck in your future career, and hopefully we'll meet again > some time! > > Best, > > Wout > > ------------------------- > > From: Julian Uszkoreit via Psidev-qc-dev > <psi...@li...> > Sent: Wednesday, January 11, 2023 9:29 > To: Psidev-qc-dev <psi...@li...> > Subject: [Psidev-qc-dev] Retirement from mzQC development and best > wishes > > Hej all, > > As you know, I switched my position away from the proteomics context > into the medical bioinformatics (I am the head of Research IT at > University Hospital Duesseldorf now). As this, I unfortunately don't > have the time to actively work on the development of mzQC anymore. But > > if the paper gets to a state for final reading and commenting, I would > > still like to help there and give my 2 cents :) > > Obviously, I need to retire from my position as the ontology > coordinator > at the next convenient time point. > > It was a pleasure working with you all in the very important topic of > standardization! Looking forward to meet you again and all the best to > you! > > See you, > Julian > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://urldefense.com/v3/__https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$ > [1] > > Links: > ------ > [1] > https://urldefense.com/v3/__https:/lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$ > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: David T. <dav...@pa...> - 2023-01-15 14:21:44
|
Hi, Julian. I entirely agree with Wout. Your contributions over the last few years have been key to our success. Thank you for all your work with the CV, and we will also miss your company on our calls! Natasha and I have moved back home to Cape Town at the start of this year. At the moment, we don’t even have reliable network connectivity at the house, so I am able to check my mail quite rarely. We hope to get that link fixed in the coming week. Thank you again! Dave From: Bittremieux, Wout via Psidev-qc-dev <psi...@li...> Sent: Wednesday, 11 January 2023 15:55 To: Psidev-qc-dev <psi...@li...>; Julian Uszkoreit <jul...@ru...> Subject: Re: [Psidev-qc-dev] Retirement from mzQC development and best wishes Hi Julian, I think I speak for the entire group when I say that it was an absolute pleasure to work with you for all those years! Lots of problems to solve in medical bioinformatics as well, so I don't think you'll be bored. 😉 We'll continue to make progress on the mzQC manuscript. I'm hopeful we'll have a nice end result soon, so we'll reach out for that in the near future. Best of luck in your future career, and hopefully we'll meet again some time! Best, Wout ________________________________ From: Julian Uszkoreit via Psidev-qc-dev <psi...@li...<mailto:psi...@li...>> Sent: Wednesday, January 11, 2023 9:29 To: Psidev-qc-dev <psi...@li...<mailto:psi...@li...>> Subject: [Psidev-qc-dev] Retirement from mzQC development and best wishes Hej all, As you know, I switched my position away from the proteomics context into the medical bioinformatics (I am the head of Research IT at University Hospital Duesseldorf now). As this, I unfortunately don't have the time to actively work on the development of mzQC anymore. But if the paper gets to a state for final reading and commenting, I would still like to help there and give my 2 cents :) Obviously, I need to retire from my position as the ontology coordinator at the next convenient time point. It was a pleasure working with you all in the very important topic of standardization! Looking forward to meet you again and all the best to you! See you, Julian _______________________________________________ Psidev-qc-dev mailing list Psi...@li...<mailto:Psi...@li...> https://urldefense.com/v3/__https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$<https://urldefense.com/v3/__https:/lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$> |
From: Bittremieux, W. <wbi...@he...> - 2023-01-11 14:07:31
|
Hi Julian, I think I speak for the entire group when I say that it was an absolute pleasure to work with you for all those years! Lots of problems to solve in medical bioinformatics as well, so I don't think you'll be bored. 😉 We'll continue to make progress on the mzQC manuscript. I'm hopeful we'll have a nice end result soon, so we'll reach out for that in the near future. Best of luck in your future career, and hopefully we'll meet again some time! Best, Wout ________________________________ From: Julian Uszkoreit via Psidev-qc-dev <psi...@li...> Sent: Wednesday, January 11, 2023 9:29 To: Psidev-qc-dev <psi...@li...> Subject: [Psidev-qc-dev] Retirement from mzQC development and best wishes Hej all, As you know, I switched my position away from the proteomics context into the medical bioinformatics (I am the head of Research IT at University Hospital Duesseldorf now). As this, I unfortunately don't have the time to actively work on the development of mzQC anymore. But if the paper gets to a state for final reading and commenting, I would still like to help there and give my 2 cents :) Obviously, I need to retire from my position as the ontology coordinator at the next convenient time point. It was a pleasure working with you all in the very important topic of standardization! Looking forward to meet you again and all the best to you! See you, Julian _______________________________________________ Psidev-qc-dev mailing list Psi...@li... https://urldefense.com/v3/__https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$ |
From: Julian U. <jul...@ru...> - 2023-01-11 08:46:32
|
Hej all, As you know, I switched my position away from the proteomics context into the medical bioinformatics (I am the head of Research IT at University Hospital Duesseldorf now). As this, I unfortunately don't have the time to actively work on the development of mzQC anymore. But if the paper gets to a state for final reading and commenting, I would still like to help there and give my 2 cents :) Obviously, I need to retire from my position as the ontology coordinator at the next convenient time point. It was a pleasure working with you all in the very important topic of standardization! Looking forward to meet you again and all the best to you! See you, Julian |
From: Nils H. <nil...@ce...> - 2023-01-09 15:50:14
|
Hi everyone and Happy New Year! Apologies for the short heads-up, but I will be giving a presentation on my work on lipids, MS, data standards etc. in front of the EPILIPIDNET WG2 [1] tomorrow. Does anyone have a slide deck or a single summary slide on mzQC that you maybe already presented and that you would be willing to share with me? Best Nils [1] https://www.epilipid.net/wg2/ -- Dr. Nils Hoffmann Cloud and Interoperability Platform Coordinator - ELIXIR-DE de.NBI - Deutsches Netzwerk für Bioinformatik-Infrastruktur Institut für Bio- und Geowissenschaften Computergestützte Metagenomik (IBG-5) Forschungszentrum Jülich c/o Centrum für Biotechnologie (CeBiTec) Universität Bielefeld 33594 Bielefeld Room: Building X C4-233 Tel: +49(0)521-106-86780 E-Mail: nil...@ce... E-Mail: co...@de... www.denbi.de elixir-europe.org |
From: walzer <wa...@eb...> - 2022-11-30 10:33:44
|
Dear all, due to travel- and illness-related absences, we will postpone today's teleconference. In case you should have a time-sensitive issue that needs discussion, you can catch me (and others) on slack, certainly around the usual call time. until next time, best, mths On 2022-11-29 15:15, walzer wrote: > Dear colleagues, > > We have our next teleconference on Wednesday November 30, at 15h00 GMT > (15h00 London, 16h00 Western Europe, 7h00 US West Coast). > > You can connect to our teleconference on Zoom through the following > link: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > (Password: 012575) > > Let's make this a quick one, Agenda items: > > CV: Improvement discussion on current draft PRs > Manuscripts: Synchronise usecase progress > > Best, > mths -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: walzer <wa...@eb...> - 2022-11-29 15:15:39
|
Dear colleagues, We have our next teleconference on Wednesday November 30, at 15h00 GMT (15h00 London, 16h00 Western Europe, 7h00 US West Coast). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Let's make this a quick one, Agenda items: CV: Improvement discussion on current draft PRs Manuscripts: Synchronise usecase progress Best, mths -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: walzer <wa...@eb...> - 2022-10-19 16:18:20
|
Hi all, regarding the spec doc review, we actually went through all the comments made directly to specific parts of the specification document, only reviewer 1 & 3 made direct comments to the spec doc. Please have a look at the remaining few general comments in the document called mzQC_External_Reviewers_Comments_20221007_SRB. You should have recieved a share notification for the whole folder. Overall, as you could see, not many APs, I will add the comments to our 'living' specification document, for which you all should be assigned editors. (If not please contact me.) I have compiled the reviews in the external_review_response document (see shared folder) so that we can go on and complete the response. best, mths On 2022-10-19 12:05, walzer wrote: > Hi all, > As explained last call, the spec doc reviews are in now. > And we should also review the use case status of both WIP manuscripts. > Any other topics we need to discuss, we'll collect at the start of the > call, details below. > speak soon, > > >> at 15h00 GMT (15h00 London, 16h00 Western Europe, 7h00 US West Coast). >> >> You can connect to our teleconference on Zoom through the following >> link: >> https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 >> [1] >> >> (Password: 012575) >> -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: walzer <wa...@eb...> - 2022-10-19 11:05:29
|
Hi all, As explained last call, the spec doc reviews are in now. And we should also review the use case status of both WIP manuscripts. Any other topics we need to discuss, we'll collect at the start of the call, details below. speak soon, > at 15h00 GMT (15h00 London, 16h00 Western Europe, 7h00 US West Coast). > > You can connect to our teleconference on Zoom through the following > link: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > [1] > > (Password: 012575) > -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: David T. <dav...@pa...> - 2022-09-21 15:05:05
|
Hi, all. Next week in Estonia I will be presenting the attached slides to address the question, "How do we measure success for a top-down proteome experiment?" It's very basic, but it is intended for an audience of graduate students from proteomics in general (not top-down people particularly). Thanks, Dave |
From: walzer <wa...@eb...> - 2022-09-21 09:27:00
|
Hi all, we recieved some news yesterday on the review status. In the interest of everybody's time planning, I'll summarise here, as I would like to spend a good portion of the call on the special issue manuscript for the libs. Three of the five contacted reviewers provided reviews, however there is a delay with one review. We will recieve the reviews once they're complete. Which will be soon, but not before the call. So this would leave us fortunate opportunity to coordinate and work on the 'libs manuscript'. speak soon, On 2022-09-21 01:09, Bittremieux, Wout via Psidev-qc-dev wrote: > Dear colleagues, > > We have our next teleconference on Wednesday September 21, at 15h00 > GMT (15h00 London, 16h00 Western Europe, 7h00 US West Coast). > > You can connect to our teleconference on Zoom through the following > link: > https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 > [1] > > (Password: 012575) > > Agenda items: > > * Specification document: Updates from DocProc? > > * CV: Progress on PSI-MS CV integration (see PR 155 [2]) and > discussion on newly proposed terms (see Slack messages since Sept 7). > * Manuscripts: Progress on mzQC software technical note and status > report use cases mzQC format manuscript [3]. > > Best, Wout > > > Links: > ------ > [1] > https://urldefense.com/v3/__https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09__;!!LLK065n_VXAQ!jXFP1i7y3S3FbuKHw14120R20-aWpu7purYUpyppmPPk7RfsSRAxfX9heL5sxiZDHki-8zLIu2xuvk0n28m5Ixq2EUSrMb1V_M31zX8$ > [2] https://github.com/HUPO-PSI/psi-ms-CV/pull/155 > [3] > https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
From: Bittremieux, W. <wbi...@he...> - 2022-09-21 00:09:45
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Dear colleagues, We have our next teleconference on Wednesday September 21, at 15h00 GMT (15h00 London, 16h00 Western Europe, 7h00 US West Coast). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09<https://urldefense.com/v3/__https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09__;!!LLK065n_VXAQ!jXFP1i7y3S3FbuKHw14120R20-aWpu7purYUpyppmPPk7RfsSRAxfX9heL5sxiZDHki-8zLIu2xuvk0n28m5Ixq2EUSrMb1V_M31zX8$> (Password: 012575) Agenda items: * Specification document: Updates from DocProc? * CV: Progress on PSI-MS CV integration (see PR 155<https://github.com/HUPO-PSI/psi-ms-CV/pull/155>) and discussion on newly proposed terms (see Slack messages since Sept 7). * Manuscripts: Progress on mzQC software technical note and status report use cases mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>. Best, Wout |