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From: ed <era...@gm...> - 2023-05-27 10:18:57
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Congrats Wout and Dave! Best wishes for the new positions. On Thu, May 25, 2023 at 10:39 AM David TABB <dav...@pa...> wrote: > Hi, everyone. > > > I am delighted to report that the QC Working Group has elected a new > chair: * Wout Bittremieux* (wou...@ua...). Wout is an > assistant research profesor at the University of Antwerp. A founding > member of the HUPO-PSI QC Working Group in 2016, he has played a key role > in publications and the mzQC specification documentation resulting from > this team, not to mention his enduring effort to ensure the group has > regular recorded meetings. From the beginning, Wout has been essential > personnel to the QC team. > > > Dave Tabb will be retiring from the role of QC Working Group Chair, > shifting to an informal role as "Chair Emeritus." > > > Thank you so much for your willingness to take on this role, Wout! > > Dave > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev > -- Eralp DOGU, PhD Assoc. Prof., Department of Statistics <http://www.linkedin.com/in/eralpdogu>Mugla Sitki Kocman University, Phone: +902522115446 era...@mu..., era...@gm... https://sites.google.com/site/eralpdogu/ |
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From: Julian U. <jul...@ru...> - 2023-05-26 07:39:35
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Hej, Also from my side: thanks to Dave for all his work and congrats to Wout. Best, Julian On 25.05.2023 19:06, Tenzer, Stefan wrote: > Congratulations Wout! > > Best wishes and hope to see you at ASMS! > > Stefan > > >> Am 25.05.2023 um 18:48 schrieb David Jimenez-Morales >> <dav...@st... >> <mailto:dav...@st...>>: >> >> Congratulations Wout! I am sure you'll do a fantastic job. >> >> And congratulations to Dave as well for the incredible job that he has >> done. >> >> Thanks >> David >> >> DAVID JIMENEZ-MORALES, PHD >> Bioinformatics Lead >> Stanford University School of Medicine >> Department of Medicine/Division of Cardiovascular Medicine >> Center for Academic Medicine >> 453 Quarry Road >> Palo Alto, CA 94304 >> http://web.stanford.edu/people/david.jimenez-morales >> <http://web.stanford.edu/people/david.jimenez-morales> >> >> *Confidentiality notice:*This communication and any attachments may >> contain confidential or privileged information for the use by the >> designated recipient(s) named above. If you are not the intended >> recipient, you are hereby notified that you have received this >> communication in error and that any review, disclosure, dissemination, >> distribution or copying of it or the attachments is strictly >> prohibited. If you have received this communication in error, please >> contact me and destroy all copies of the communication and >> attachments. Thank you. >> >> >> ------------------------------------------------------------------------ >> *From:*Eric Deutsch via Psidev-qc-dev >> <psi...@li... >> <mailto:psi...@li...>> >> *Sent:*Thursday, May 25, 2023 7:55 AM >> *To:*David TABB <dav...@pa... >> <mailto:dav...@pa...>>;ps...@eb... >> <mailto:ps...@eb...><ps...@eb... >> <mailto:ps...@eb...>>;psi...@li... >> <mailto:psi...@li...><psi...@li... <mailto:psi...@li...>> >> *Cc:*Eric Deutsch <ede...@sy... >> <mailto:ede...@sy...>> >> *Subject:*Re: [Psidev-qc-dev] [Psi-sc] Election Results: Wout >> Bittremieux new chair of QC! >> Excellent news! Thank you for your past and current contributions, >> Dave. And welcome to Wout! >> >> We should update the roles on the current and new web site. And email >> list. >> >> Regards, >> Eric >> >> *From:*Psi-sc <psi...@eb... >> <mailto:psi...@eb...>>*On Behalf Of*David TABB via Psi-sc >> *Sent:*Thursday, May 25, 2023 12:39 AM >> *To:*ps...@eb... >> <mailto:ps...@eb...>;psi...@li... >> <mailto:psi...@li...> >> *Cc:*Wout Bittremieux <wou...@ua... >> <mailto:wou...@ua...>> >> *Subject:*[Psi-sc] Election Results: Wout Bittremieux new chair of QC! >> >> Hi, everyone. >> >> I am delighted to report that the QC Working Group has elected a new >> chair:*/Wout Bittremieux/*(wou...@ua... >> <mailto:wou...@ua...>). Wout is an assistant >> research profesor at the University of Antwerp. A founding member of >> the HUPO-PSI QC Working Group in 2016, he has played a key role in >> publications and the mzQC specification documentation resulting from >> this team, not to mention his enduring effort to ensure the group has >> regular recorded meetings. From the beginning, Wout has been >> essential personnel to the QC team. >> >> Dave Tabb will be retiring from the role of QC Working Group Chair, >> shifting to an informal role as "Chair Emeritus." >> >> Thank you so much for your willingness to take on this role, Wout! >> Dave >> _______________________________________________ >> Psidev-qc-dev mailing list >> Psi...@li... >> <mailto:Psi...@li...> >> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev >> <https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev> > > > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: Tenzer, S. <te...@un...> - 2023-05-25 17:22:27
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Congratulations Wout! Best wishes and hope to see you at ASMS! Stefan Am 25.05.2023 um 18:48 schrieb David Jimenez-Morales <dav...@st...<mailto:dav...@st...>>: Congratulations Wout! I am sure you'll do a fantastic job. And congratulations to Dave as well for the incredible job that he has done. Thanks David DAVID JIMENEZ-MORALES, PHD Bioinformatics Lead Stanford University School of Medicine Department of Medicine/Division of Cardiovascular Medicine Center for Academic Medicine 453 Quarry Road Palo Alto, CA 94304 http://web.stanford.edu/people/david.jimenez-morales Confidentiality notice: This communication and any attachments may contain confidential or privileged information for the use by the designated recipient(s) named above. If you are not the intended recipient, you are hereby notified that you have received this communication in error and that any review, disclosure, dissemination, distribution or copying of it or the attachments is strictly prohibited. If you have received this communication in error, please contact me and destroy all copies of the communication and attachments. Thank you. ________________________________ From: Eric Deutsch via Psidev-qc-dev <psi...@li...<mailto:psi...@li...>> Sent: Thursday, May 25, 2023 7:55 AM To: David TABB <dav...@pa...<mailto:dav...@pa...>>; ps...@eb...<mailto:ps...@eb...> <ps...@eb...<mailto:ps...@eb...>>; psi...@li...<mailto:psi...@li...> <psi...@li...<mailto:psi...@li...>> Cc: Eric Deutsch <ede...@sy...<mailto:ede...@sy...>> Subject: Re: [Psidev-qc-dev] [Psi-sc] Election Results: Wout Bittremieux new chair of QC! Excellent news! Thank you for your past and current contributions, Dave. And welcome to Wout! We should update the roles on the current and new web site. And email list. Regards, Eric From: Psi-sc <psi...@eb...<mailto:psi...@eb...>> On Behalf Of David TABB via Psi-sc Sent: Thursday, May 25, 2023 12:39 AM To: ps...@eb...<mailto:ps...@eb...>; psi...@li...<mailto:psi...@li...> Cc: Wout Bittremieux <wou...@ua...<mailto:wou...@ua...>> Subject: [Psi-sc] Election Results: Wout Bittremieux new chair of QC! Hi, everyone. I am delighted to report that the QC Working Group has elected a new chair: Wout Bittremieux(wou...@ua...<mailto:wou...@ua...>). Wout is an assistant research profesor at the University of Antwerp. A founding member of the HUPO-PSI QC Working Group in 2016, he has played a key role in publications and the mzQC specification documentation resulting from this team, not to mention his enduring effort to ensure the group has regular recorded meetings. From the beginning, Wout has been essential personnel to the QC team. Dave Tabb will be retiring from the role of QC Working Group Chair, shifting to an informal role as "Chair Emeritus." Thank you so much for your willingness to take on this role, Wout! Dave _______________________________________________ Psidev-qc-dev mailing list Psi...@li...<mailto:Psi...@li...> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: David Jimenez-M. <dav...@st...> - 2023-05-25 16:49:05
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Congratulations Wout! I am sure you'll do a fantastic job. And congratulations to Dave as well for the incredible job that he has done. Thanks David DAVID JIMENEZ-MORALES, Phd Bioinformatics Lead Stanford University School of Medicine Department of Medicine/Division of Cardiovascular Medicine Center for Academic Medicine 453 Quarry Road Palo Alto, CA 94304 http://web.stanford.edu/people/david.jimenez-morales Confidentiality notice: This communication and any attachments may contain confidential or privileged information for the use by the designated recipient(s) named above. If you are not the intended recipient, you are hereby notified that you have received this communication in error and that any review, disclosure, dissemination, distribution or copying of it or the attachments is strictly prohibited. If you have received this communication in error, please contact me and destroy all copies of the communication and attachments. Thank you. ________________________________ From: Eric Deutsch via Psidev-qc-dev <psi...@li...> Sent: Thursday, May 25, 2023 7:55 AM To: David TABB <dav...@pa...>; ps...@eb... <ps...@eb...>; psi...@li... <psi...@li...> Cc: Eric Deutsch <ede...@sy...> Subject: Re: [Psidev-qc-dev] [Psi-sc] Election Results: Wout Bittremieux new chair of QC! Excellent news! Thank you for your past and current contributions, Dave. And welcome to Wout! We should update the roles on the current and new web site. And email list. Regards, Eric From: Psi-sc <psi...@eb...<mailto:psi...@eb...>> On Behalf Of David TABB via Psi-sc Sent: Thursday, May 25, 2023 12:39 AM To: ps...@eb...<mailto:ps...@eb...>; psi...@li...<mailto:psi...@li...> Cc: Wout Bittremieux <wou...@ua...<mailto:wou...@ua...>> Subject: [Psi-sc] Election Results: Wout Bittremieux new chair of QC! Hi, everyone. I am delighted to report that the QC Working Group has elected a new chair: Wout Bittremieux (wou...@ua...<mailto:wou...@ua...>). Wout is an assistant research profesor at the University of Antwerp. A founding member of the HUPO-PSI QC Working Group in 2016, he has played a key role in publications and the mzQC specification documentation resulting from this team, not to mention his enduring effort to ensure the group has regular recorded meetings. From the beginning, Wout has been essential personnel to the QC team. Dave Tabb will be retiring from the role of QC Working Group Chair, shifting to an informal role as "Chair Emeritus." Thank you so much for your willingness to take on this role, Wout! Dave |
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From: Eric D. <eri...@is...> - 2023-05-25 15:21:33
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Excellent news! Thank you for your past and current contributions, Dave. And welcome to Wout! We should update the roles on the current and new web site. And email list. Regards, Eric *From:* Psi-sc <psi...@eb...> *On Behalf Of *David TABB via Psi-sc *Sent:* Thursday, May 25, 2023 12:39 AM *To:* ps...@eb...; psi...@li... *Cc:* Wout Bittremieux <wou...@ua...> *Subject:* [Psi-sc] Election Results: Wout Bittremieux new chair of QC! Hi, everyone. I am delighted to report that the QC Working Group has elected a new chair: *Wout Bittremieux* (wou...@ua...). Wout is an assistant research profesor at the University of Antwerp. A founding member of the HUPO-PSI QC Working Group in 2016, he has played a key role in publications and the mzQC specification documentation resulting from this team, not to mention his enduring effort to ensure the group has regular recorded meetings. From the beginning, Wout has been essential personnel to the QC team. Dave Tabb will be retiring from the role of QC Working Group Chair, shifting to an informal role as "Chair Emeritus." Thank you so much for your willingness to take on this role, Wout! Dave |
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From: David T. <dav...@pa...> - 2023-05-25 07:39:34
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Hi, everyone. I am delighted to report that the QC Working Group has elected a new chair: Wout Bittremieux (wou...@ua...). Wout is an assistant research profesor at the University of Antwerp. A founding member of the HUPO-PSI QC Working Group in 2016, he has played a key role in publications and the mzQC specification documentation resulting from this team, not to mention his enduring effort to ensure the group has regular recorded meetings. From the beginning, Wout has been essential personnel to the QC team. Dave Tabb will be retiring from the role of QC Working Group Chair, shifting to an informal role as "Chair Emeritus." Thank you so much for your willingness to take on this role, Wout! Dave |
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From: David T. <dav...@pa...> - 2023-05-25 06:45:33
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Hi, all. I apologize for missing the meeting yesterday. When I returned home from the office, I learned that Natasha had become quite ill. While I'd recalled our working group meeting earlier in the day, it fell completely out of my mind until I was preparing for bed. Wout, I hope that the election went smoothly. I believe you will be an excellent leader for the team-- because you already have been a brilliant leader for the team! Thanks, Dave ________________________________ From: Wout Bittremieux <wou...@ua...> Sent: Tuesday, May 23, 2023 4:47:05 PM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference 24/05 Dear colleagues, We have our next teleconference tomorrow, Wednesday May 24, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * Working group chair election. Currently we have one candidate: Wout Bittremieux. You can vote electronically prior to the teleconference here<https://urldefense.com/v3/__https://forms.gle/e9q6mxeRU8h2QL8N9__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECFUGZTGd$>, or during the meeting. * mzQC software tools manuscript<https://urldefense.com/v3/__https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECKd2OTyR$>: Discuss updated analyses. * mzQC specification manuscript<https://urldefense.com/v3/__https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECKvMRufC$>: Task division and planning. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-05-25 06:33:37
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Hi Dave, all, No problem. Hopefully Natasha recovers smoothly. You can find yesterday's meeting notes here<https://github.com/HUPO-PSI/mzQC/blob/main/meeting_notes/2023/20230524_telco.md>. The results from the election were pretty conclusive. 🙂 We discussed that it is up to you to decide when you want to make the change official and communicate this to the PSI Steering Committee. Due to ASMS, our next teleconference will be next week, May 31, 2023, and using Microsoft Teams (instead of Zoom). Best, Wout ________________________________ From: David TABB <dav...@pa...> Sent: Thursday, May 25, 2023 08:18 To: Wout Bittremieux <wou...@ua...>; psi...@li... <psi...@li...> Subject: Re: Upcoming teleconference 24/05 CAUTION: This email originated from outside of the organization. Do not click links or open attachments unless you recognize the sender and know the content is safe. Hi, all. I apologize for missing the meeting yesterday. When I returned home from the office, I learned that Natasha had become quite ill. While I'd recalled our working group meeting earlier in the day, it fell completely out of my mind until I was preparing for bed. Wout, I hope that the election went smoothly. I believe you will be an excellent leader for the team-- because you already have been a brilliant leader for the team! Thanks, Dave ________________________________ From: Wout Bittremieux <wou...@ua...> Sent: Tuesday, May 23, 2023 4:47:05 PM To: psi...@li... Subject: [Psidev-qc-dev] Upcoming teleconference 24/05 Dear colleagues, We have our next teleconference tomorrow, Wednesday May 24, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * Working group chair election. Currently we have one candidate: Wout Bittremieux. You can vote electronically prior to the teleconference here<https://urldefense.com/v3/__https://forms.gle/e9q6mxeRU8h2QL8N9__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECFUGZTGd$>, or during the meeting. * mzQC software tools manuscript<https://urldefense.com/v3/__https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECKd2OTyR$>: Discuss updated analyses. * mzQC specification manuscript<https://urldefense.com/v3/__https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit__;!!JFdNOqOXpB6UZW0!vUaiCmkJmcPiwLslqljVkHBHvbbd_kXxl2EexSqHoiylCRbPdnepm8ISagu_pWSU9zXig86T4l0OIFCrXFEnRn6ECKvMRufC$>: Task division and planning. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-05-23 16:23:17
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Dear colleagues, We have our next teleconference tomorrow, Wednesday May 24, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * Working group chair election. Currently we have one candidate: Wout Bittremieux. You can vote electronically prior to the teleconference here<https://forms.gle/e9q6mxeRU8h2QL8N9>, or during the meeting. * mzQC software tools manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Discuss updated analyses. * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit>: Task division and planning. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-05-15 16:00:59
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Dear colleagues, As discussed during our previous meetings, Dave has indicated that he will step down as working group chair. First of all, I think I speak for all of us in extending our heartfelt thanks for expertly guiding the group over the past years. This also means that we need to elect a new WG chair. As discussed last time, currently the nominations for WG chair are: * Mathias Walzer has nominated Wout Bittremieux. Wout has accepted the nomination. * Dave Tabb has nominated Mathias Walzer. Mathias has declined the nomination. There is now an opportunity to submit your candidacy for WG chair or nominate alternative candidates. Please do so by Monday May 22, 2023 by replying to this email. We will elect a new WG chair during our upcoming teleconference next week on Wednesday May 24, 2023 or via online ballot for people who are unable to join the meeting. Thank you, Wout |
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From: Wout B. <wou...@ua...> - 2023-04-25 18:32:33
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Dear colleagues, We have our next teleconference tomorrow, Wednesday April 26, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * Revisit working group roles<https://psidev.info/groups/quality-control#QC_group_structure>: new (co-)chair? * Update working group charter<https://psidev.info/quality-control-working-group-charter> with future goals. * Discuss mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> manuscript after Wout's recent editing pass. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-04-16 17:39:57
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Dear colleagues, This is a last-minute reminder that this week the PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023> is taking place from Monday April 17 to Wednesday April 19. This is a hybrid meeting, so even if you will not be present in Leiden or haven't signed up yet, just reply to this email or send a message on Slack to receive the Zoom information. This is the schedule for the QC working group: Monday, April 17 * 9:00–18:30: Joint MS / PI / QC / MOD session. Tuesday, April 18 * 9:00–12:30: Lipidomics Standards Initiative (Gerhard Liebisch & Nils Hoffmann). * 14:30–15:45: Polish GitHub repository (address open issues, check examples for completeness and consistency, update documentation). * 16:00–18:30: Software library round-up and finalize manuscript. (Invite David Wednesday, April 19 * 9:00–10:30: mzQC format manuscript & develop the use cases. * 11:00–12:30: Discuss the future of QC working group. * 14:30–18:30: Common session. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-03-31 14:21:57
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Dear colleagues, A few important updates from our teleconference this week (meeting notes<https://github.com/HUPO-PSI/mzQC/blob/main/meeting_notes/2023/20230329_telco.md>): 1. This is the proposed schedule for the QC working group during the PSI Spring Meeting: Monday, April 17 * 9:00–18:30: Joint MS / PI / QC / MOD session. Tuesday, April 18 * 9:00–12:30: Lipidomics Standards Initiative (Gerhard Liebisch & Nils Hoffmann). * 14:30–15:45: Polish GitHub repository (address open issues, check examples for completeness and consistency, update documentation). * 16:00–18:30: Software library round-up and finalize manuscript. (Invite David J. to join.) Dave has teaching engagements today and will only be available to a limited extent. Wednesday, April 19 * 9:00–10:30: mzQC format manuscript & develop the use cases. * 11:00–12:30: Discuss the future of QC working group. * 14:30–18:30: Common session. 2. This was the final teleconference before the PSI Spring Meeting! Due to the Easter break, we will skip our teleconference the next two weeks. See you all in Leiden/online in April! Preparation for the Spring Meeting will be conducted asynchronously via Slack and email. Best, Wout ________________________________ From: Wout Bittremieux <wou...@ua...> Sent: Wednesday, March 29, 2023 11:48 To: psi...@li... <psi...@li...> Subject: Upcoming teleconference 29/03 (today!) Dear colleagues, We have our next teleconference today, Wednesday March 29, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023> * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>; compile QC schedule. * CV: proposal for new CV terms (see Slack). * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> (and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>). Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-03-29 11:21:43
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Dear colleagues, We have our next teleconference today, Wednesday March 29, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023> * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>; compile QC schedule. * CV: proposal for new CV terms (see Slack). * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> (and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>). Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-03-14 21:49:31
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Dear colleagues, We have our next teleconference tomorrow, Wednesday March 15, at 16h00 CET (8h00 PST, 15h00 GMT, 17h00 SAST). Note that this is one hour later than usual for the US due to differing DST switch. You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023>: Updates? * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>. * mzQC repository: Please consult the open issues on GitHub<https://github.com/HUPO-PSI/mzQC/issues> prior to the meeting. * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>. Best, Wout |
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From: Sylvie R. <syl...@un...> - 2023-03-03 22:16:05
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Dear colleagues, dear members of the HUPO-PSI community, The HUPO Proteomics Standards Initiative (PSI) develops standards for documentation and storage of Proteomics data (see http://www.psidev.info for an overview of activities). The Mass Spectrometry and Proteomics Informatics PSI working groups have submitted a new recommendation, the PSI Peak Annotation Format (mzPAF) consideration and review as a PSI standard. This document presents a specification for a fragment ion peak annotation format for mass spectra, focused on peptides. This provides a standardized format for describing the origin of fragment ions to be used in spectral libraries, other formats that aim to describe fragment ions, and software tools that annotate fragment ions. After having passed a 14-day review of the PSI steering group and having been revised as requested by the internal reviewers, the proposed document, Draft 10 of Version 1.0, now goes through the 45-day public and external review until *April 18th, 2023*. The current draft specification (.docx) is attached to this e-mail. Further information, including any updates to this document, implementations, and examples is available in the GitHub repository: https://github.com/HUPO-PSI/mzPAF and at https://psidev.info/mzPAF. This message is to encourage you to contribute to the standards development activity by commenting on the document. We invite both positive and negative comments on the relevance, correctness, clarity and appropriateness of the specification (e.g. is it presented in accordance with the templates and clearly written, is it sufficiently detailed and comprehensively described and are the examples in agreement with the specification?). Comments can be made on the specification as a whole or on specific parts. If you do not feel experienced enough to comment on this document, but know colleagues who are, please feel free to forward this message to them. There is no requirement that people commenting should have had any prior contact with the PSI. Please send comments by e-mail directly to syl...@un... before*April 18th, 2023*. Thank you very much in advance for your valuable help. Best regards. Professor Sylvie RICARD-BLUM - PSI Editor Pericellular and Extracellular Supramolecular Assemblies UMR 5246 CNRS - University Lyon 1 Institute of Molecular and Supramolecular Chemistry and Biochemistry University Claude Bernard Lyon 1, 43 Boulevard du 11 novembre 1918 69622 Villeurbanne Cedex, France Phone: +33(0)4 72 44 82 32 E-mail: syl...@un... |
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From: Wout B. <wou...@ua...> - 2023-03-01 11:42:38
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Dear colleagues, We have our next teleconference today, Wednesday March 1, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Zoom through the following link: https://uchealth.zoom.us/j/92419363577?pwd=WVp5Q3FXNU9vaVdJT0ZNRllXWlN3Zz09 (Password: 012575) Agenda items: * PSI Spring Meeting<https://psidev.info/hupo-psi-meeting-2023> * April 17-19 in Leiden, the Netherlands. * Draft agenda<https://docs.google.com/spreadsheets/d/1J4ui2ILZvSMasix0xuZ5qUAOMDbgKsebnt6gqVHY1oA/edit#gid=1021763599>. * Document process<https://drive.google.com/drive/folders/1IfXpzuiVPRjFVaRYfRgVLmH6Kkytu9Df>: status check if necessary. * mzQC repository: GitHub issues<https://github.com/HUPO-PSI/mzQC/issues> status check. * Manuscripts: mzQC software tools<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> and mzQC format manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>. Best, Wout |
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From: Tenzer, S. <te...@un...> - 2023-02-06 11:55:42
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Hi Dave, Hi everyone, I am very sorry for the long silence and deeply apologize for not being available as I had planned to be, as my workload here in Mainz exploded in a way that i had not foreseen. I agree that under these circumstances, it does not make sense to have me listed as a co-chair, so I am very happy to pass that role to Wout. Looking forward to see the future process of qcML! Best wishes, Stefan Am 06.04.2021 um 08:54 schrieb David TABB <dav...@pa...<mailto:dav...@pa...>>: Hi, folks. I really enjoyed talking with you at the HUPO-PSI spring meeting! The steering committee is trying to ensure that the websites for individual work groups are still up-to-date. In looking at ours (https://www.psidev.info/groups/quality-control), I have the following comments and suggestions: 1. “View Documents” at the top points to the PSI file collection rather than our GitHub. 2. Under “Focus and Purpose” we specify that we have industry researchers, journal representatives, and instrument manufacturers represented in our team. Has that ever been true? 3. The “Current Projects” section specifies our development of qcML (sic). Similarly our second though sixth points in “Goals/Milestones” specify development of qcML. 4. Stefan Tenzer is listed as a co-chair, but I think it has been more than a year since our last contact, yes? 5. “Formats, Definitions and Metrics” highlights qcML again. When the PSI-SC removed the “Secretary” column from “Roles and Responsibilities” (https://www.psidev.info/roles) it was to move Wout Bittremieux’s name to co-chair, replacing Stefan Tenzer’s name. I see that “Secretary” vanished, but that removed Wout’s name entirely! Mathias, the page lists you as our website maintainer. Would you coordinate with Chuqiao Gong to update this information? Thanks, Dave _______________________________________________ Psidev-qc-dev mailing list Psi...@li...<mailto:Psi...@li...> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev |
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From: Wout B. <wou...@ua...> - 2023-02-01 10:21:39
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Dear colleagues, Due to conflicting meetings we will not have a call today. Asynchronous communication can proceed on Slack. Best, Wout |
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From: Bittremieux, W. <wbi...@he...> - 2023-02-01 08:47:01
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Dear colleagues, Due to conflicting meetings we will not have a call today. Asynchronous communication can proceed on Slack. Best, Wout |
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From: walzer <wa...@eb...> - 2023-01-18 14:24:23
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Hej Julian, basically just arrived back from holiday, so let me chime in here a little late. Thank you, it has been a pleasure working with you, all the best with the new position and let's hope our paths cross again! cheers, mths On 2023-01-15 13:42, David TABB wrote: > Hi, Julian. > > I entirely agree with Wout. Your contributions over the last few > years have been key to our success. Thank you for all your work with > the CV, and we will also miss your company on our calls! > > Natasha and I have moved back home to Cape Town at the start of this > year. At the moment, we don’t even have reliable network > connectivity at the house, so I am able to check my mail quite rarely. > We hope to get that link fixed in the coming week. > > Thank you again! > > Dave > > From: Bittremieux, Wout via Psidev-qc-dev > <psi...@li...> > Sent: Wednesday, 11 January 2023 15:55 > To: Psidev-qc-dev <psi...@li...>; Julian > Uszkoreit <jul...@ru...> > Subject: Re: [Psidev-qc-dev] Retirement from mzQC development and best > wishes > > Hi Julian, > > I think I speak for the entire group when I say that it was an > absolute pleasure to work with you for all those years! Lots of > problems to solve in medical bioinformatics as well, so I don't think > you'll be bored. 😉 > > We'll continue to make progress on the mzQC manuscript. I'm hopeful > we'll have a nice end result soon, so we'll reach out for that in the > near future. > > Best of luck in your future career, and hopefully we'll meet again > some time! > > Best, > > Wout > > ------------------------- > > From: Julian Uszkoreit via Psidev-qc-dev > <psi...@li...> > Sent: Wednesday, January 11, 2023 9:29 > To: Psidev-qc-dev <psi...@li...> > Subject: [Psidev-qc-dev] Retirement from mzQC development and best > wishes > > Hej all, > > As you know, I switched my position away from the proteomics context > into the medical bioinformatics (I am the head of Research IT at > University Hospital Duesseldorf now). As this, I unfortunately don't > have the time to actively work on the development of mzQC anymore. But > > if the paper gets to a state for final reading and commenting, I would > > still like to help there and give my 2 cents :) > > Obviously, I need to retire from my position as the ontology > coordinator > at the next convenient time point. > > It was a pleasure working with you all in the very important topic of > standardization! Looking forward to meet you again and all the best to > you! > > See you, > Julian > > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://urldefense.com/v3/__https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$ > [1] > > Links: > ------ > [1] > https://urldefense.com/v3/__https:/lists.sourceforge.net/lists/listinfo/psidev-qc-dev__;!!LLK065n_VXAQ!ntKpot6c7D1zQ1KQBKlm50FAQ7BW5BEJVjhm-h-0JwBj8-sF9tTEiMqF11Y5TLSxDQo3VklGzJcpJtSDShPQJbeTGi-YqLkVZ-_TMLQ$ > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Mathias Walzer European Bioinformatics Institute (EMBL-EBI) Wellcome Trust Genome Campus, Hinxton, Cambridge, UK Office: +44 (0)1223 494 2610 E-mail: wa...@eb... |
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