psidev-qc-dev — PSI-QC working group mailinglist

Re: [Psidev-qc-dev] Organizational roundup

[Bittremieux W. <wou...@ua...>]

Hi Dave,

My apologies for not explicitly confirming sooner. I'll gladly take up the role of secretary, and I have no further remarks about the role distribution.

Kind regards,
Wout

> On 18 May 2016, at 14:17, Tabb, David, Prof <dt...@su...> <dt...@su...> wrote:
> 
> Hi, folks.
> 
> I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday.  If you would like to completely alter the associations of names with positions, that’s absolutely fine.  I do want some feedback before I tell HUPO this is what we’re going to try, though.
> 
> I would really value some emails such as, “yes, I am willing to fill that role” or “no, that doesn’t sound like a good role for me.”
> 
> Thank you!
> Dave
> 
> From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
> Sent: Friday, 06 May 2016 08:35
> To: psi...@li...
> Subject: [Psidev-qc-dev] Organizational roundup
> 
> Hello, all!
> 
> I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.
> 
> For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.
> 
> Chair: David Tabb
> Website/Co-Chair: Mathias Walzer
> Editor/Co-Chair: Stefan Tenzer
> Minimum Reporting Requirements: Weimin Zhu
> Ontology: Martin Eisenacher
> Secretary: Wout Bittremieux
> 
> My rationale looks like this:
> We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  J
> 
> I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.
> 
> Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).
> 
> Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.
> 
> Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!
> 
> Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).
> 
> If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.
> 
> Yes, I will attend ASMS in San Antonio, and I think that’s a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.
> 
> Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.
> 
> We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).
> 
> Thank you all for your willingness to take part in this push!
> Dave
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Re: [Psidev-qc-dev] Organizational roundup

[Tabb, D. P. <dt...@su...>]

Hi, folks.

I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday.  If you would like to completely alter the associations of names with positions, that's absolutely fine.  I do want some feedback before I tell HUPO this is what we're going to try, though.

I would really value some emails such as, "yes, I am willing to fill that role" or "no, that doesn't sound like a good role for me."

Thank you!
Dave

From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
Sent: Friday, 06 May 2016 08:35
To: psi...@li...
Subject: [Psidev-qc-dev] Organizational roundup

Hello, all!

I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.

For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.

Chair: David Tabb
Website/Co-Chair: Mathias Walzer
Editor/Co-Chair: Stefan Tenzer
Minimum Reporting Requirements: Weimin Zhu
Ontology: Martin Eisenacher
Secretary: Wout Bittremieux

My rationale looks like this:
We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  :)

I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.

Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).

Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.

Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!

Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).

If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.

Yes, I will attend ASMS in San Antonio, and I think that's a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.

Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.

We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).

Thank you all for your willingness to take part in this push!
Dave

[Psidev-qc-dev] Organizational roundup

[Tabb, D. P. <dt...@su...>]

Hello, all!

I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.

For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.

Chair: David Tabb
Website/Co-Chair: Mathias Walzer
Editor/Co-Chair: Stefan Tenzer
Minimum Reporting Requirements: Weimin Zhu
Ontology: Martin Eisenacher
Secretary: Wout Bittremieux

My rationale looks like this:
We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  :)

I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.

Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).

Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.

Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!

Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).

If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.

Yes, I will attend ASMS in San Antonio, and I think that's a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.

Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.

We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).

Thank you all for your willingness to take part in this push!
Dave