psidev-qc-dev — PSI-QC working group mailinglist

Re: [Psidev-qc-dev] Work for TODAY: Abstract for HUPO 2016 in Taipei

[Reza S. <rez...@eb...>]

Hi David,

Some minor edits, with my metabolomics hat on, reads well.

Best Wishes, 

Reza



> On 25 May 2016, at 09:00, David L. Tabb <dav...@va...> wrote:
> 
> Hi, all.  I'm boarding.  See attached draft
> 
> On 5/25/2016 9:30 AM, David L. Tabb wrote:
>> Hello, all!
>> 
>> I have learned that HUPO expects abstracts by today, and we do not yet have a submission in place for the new qcML working group (due to disorganization on my part, primarily).  Here's what the format expects:
>> 
>> total max. 3000 characters 
>> 
>> Sections:
>> title: max 150 characters
>> Introduction and Objectives
>> Methods
>> Results and discussion
>> Conclusion
>> Keywords
>> I am about to board a flight from London to Dallas, having just arrived here from Cape Town, so I am jet-lagged and sleep-deprived.  Just the same, I will submit a manuscript once I arrive at Kansas City if nobody else can do it first (I just created an account for myself at the website, actually).  Are any of us attending the meeting in Taipei?  I hope you will volunteer to present on our behalf, if so!  I may be able to combine Taipei with a half-planned trip to Beijing, but that will probably involve some contortions.  I don't have a budget handy to attend this meeting.
>> 
>> I also hoped to send out a message to this list summarizing the current status of the leadership roles each of us has filled, but yesterday became pretty messy as I prepared for my departure for an extended visit to the United States.  I see that Reza has volunteered to help us with minimal information in the area of metabolomics.  Stefan gave a well-considered response to the editor role, saying that he was willing to help us navigate the document process.  Wout is happy to serve as secretary.  Dirk wrote affirming the need for qcML roles outside shotgun proteomics.  Mathias liked the idea of co-chairing and spurring us along with our web resources.  I'd still like to see a response from Weimin Zhu and Martin Eisenacher confirming their willingness to take on tasks.
>> 
>> Okay, the lines to board are starting to form.  I hope to see amazing things when next I connect to the network!
>> Dave
>> 
>> 
>> ------------------------------------------------------------------------------
>> Mobile security can be enabling, not merely restricting. Employees who
>> bring their own devices (BYOD) to work are irked by the imposition of MDM
>> restrictions. Mobile Device Manager Plus allows you to control only the
>> apps on BYO-devices by containerizing them, leaving personal data untouched!
>> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j <https://ad.doubleclick.net/ddm/clk/304595813;131938128;j>
>> 
>> _______________________________________________
>> Psidev-qc-dev mailing list
>> Psi...@li... <mailto:Psi...@li...>
>> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev <https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev>
> 
> <20160525-HUPO-qcML-abstract.docx>------------------------------------------------------------------------------
> Mobile security can be enabling, not merely restricting. Employees who
> bring their own devices (BYOD) to work are irked by the imposition of MDM
> restrictions. Mobile Device Manager Plus allows you to control only the
> apps on BYO-devices by containerizing them, leaving personal data untouched!
> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j_______________________________________________
> Psidev-qc-dev mailing list
> Psi...@li...
> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev

Re: [Psidev-qc-dev] Work for TODAY: Abstract for HUPO 2016 in Taipei

[David L. T. <dav...@va...>]

Hi, all.  I'm boarding.  See attached draft

On 5/25/2016 9:30 AM, David L. Tabb wrote:
> Hello, all!
>
> I have learned that HUPO expects abstracts by today, and we do not yet 
> have a submission in place for the new qcML working group (due to 
> disorganization on my part, primarily).  Here's what the format expects:
>
> total max. 3000 characters
>
> Sections:
>
>   * title: max 150 characters
>   * Introduction and Objectives
>   * Methods
>   * Results and discussion
>   * Conclusion
>   * Keywords
>
> I am about to board a flight from London to Dallas, having just 
> arrived here from Cape Town, so I am jet-lagged and sleep-deprived.  
> Just the same, I will submit a manuscript once I arrive at Kansas City 
> if nobody else can do it first (I just created an account for myself 
> at the website, actually).  Are any of us attending the meeting in 
> Taipei?  I hope you will volunteer to present on our behalf, if so!  I 
> may be able to combine Taipei with a half-planned trip to Beijing, but 
> that will probably involve some contortions.  I don't have a budget 
> handy to attend this meeting.
>
> I also hoped to send out a message to this list summarizing the 
> current status of the leadership roles each of us has filled, but 
> yesterday became pretty messy as I prepared for my departure for an 
> extended visit to the United States.  I see that Reza has volunteered 
> to help us with minimal information in the area of metabolomics.  
> Stefan gave a well-considered response to the editor role, saying that 
> he was willing to help us navigate the document process.  Wout is 
> happy to serve as secretary.  Dirk wrote affirming the need for qcML 
> roles outside shotgun proteomics.  Mathias liked the idea of 
> co-chairing and spurring us along with our web resources. *I'd still 
> like to see a response from Weimin Zhu and Martin Eisenacher 
> confirming their willingness to take on tasks*.
>
> Okay, the lines to board are starting to form.  I hope to see amazing 
> things when next I connect to the network!
> Dave
>
>
> ------------------------------------------------------------------------------
> Mobile security can be enabling, not merely restricting. Employees who
> bring their own devices (BYOD) to work are irked by the imposition of MDM
> restrictions. Mobile Device Manager Plus allows you to control only the
> apps on BYO-devices by containerizing them, leaving personal data untouched!
> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
>
>
> _______________________________________________
> Psidev-qc-dev mailing list
> Psi...@li...
> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev

Re: [Psidev-qc-dev] Work for TODAY: Abstract for HUPO 2016 in Taipei

[weimin z. <wmz...@gm...>]

Dear David and all,
sorry for the late reply, I have also been running about for meetings. to
answer David's question:
1. I will be participating taiwan meeting, so I am happy to represent the
QC group if nobody else goes;
2. whatever the unfilled role is fine with me, or happy to serve as
co-chair if PSI charter allows.
3. task to undertake: it seems that each essential components of qc
standard are taken care of: format, MIAPI-like document and CV/ontolog. I
probably can work out a database schema based on qcML, and implement it as
qc group's database.

David: let me know if you decide to visit Beijing.

cheers,

weimin

On Wed, May 25, 2016 at 3:30 PM, David L. Tabb <dav...@va...>
wrote:

> Hello, all!
>
> I have learned that HUPO expects abstracts by today, and we do not yet
> have a submission in place for the new qcML working group (due to
> disorganization on my part, primarily).  Here's what the format expects:
>
> total max. 3000 characters
>
> Sections:
>
>    - title: max 150 characters
>    - Introduction and Objectives
>    - Methods
>    - Results and discussion
>    - Conclusion
>    - Keywords
>
> I am about to board a flight from London to Dallas, having just arrived
> here from Cape Town, so I am jet-lagged and sleep-deprived.  Just the same,
> I will submit a manuscript once I arrive at Kansas City if nobody else can
> do it first (I just created an account for myself at the website,
> actually).  Are any of us attending the meeting in Taipei?  I hope you will
> volunteer to present on our behalf, if so!  I may be able to combine Taipei
> with a half-planned trip to Beijing, but that will probably involve some
> contortions.  I don't have a budget handy to attend this meeting.
>
> I also hoped to send out a message to this list summarizing the current
> status of the leadership roles each of us has filled, but yesterday became
> pretty messy as I prepared for my departure for an extended visit to the
> United States.  I see that Reza has volunteered to help us with minimal
> information in the area of metabolomics.  Stefan gave a well-considered
> response to the editor role, saying that he was willing to help us navigate
> the document process.  Wout is happy to serve as secretary.  Dirk wrote
> affirming the need for qcML roles outside shotgun proteomics.  Mathias
> liked the idea of co-chairing and spurring us along with our web
> resources.  *I'd still like to see a response from Weimin Zhu and Martin
> Eisenacher confirming their willingness to take on tasks*.
>
> Okay, the lines to board are starting to form.  I hope to see amazing
> things when next I connect to the network!
> Dave
>
>
> ------------------------------------------------------------------------------
> Mobile security can be enabling, not merely restricting. Employees who
> bring their own devices (BYOD) to work are irked by the imposition of MDM
> restrictions. Mobile Device Manager Plus allows you to control only the
> apps on BYO-devices by containerizing them, leaving personal data
> untouched!
> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
> _______________________________________________
> Psidev-qc-dev mailing list
> Psi...@li...
> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev
>
>

[Psidev-qc-dev] Work for TODAY: Abstract for HUPO 2016 in Taipei

[David L. T. <dav...@va...>]

Hello, all!

I have learned that HUPO expects abstracts by today, and we do not yet 
have a submission in place for the new qcML working group (due to 
disorganization on my part, primarily).  Here's what the format expects:

total max. 3000 characters

Sections:

  * title: max 150 characters
  * Introduction and Objectives
  * Methods
  * Results and discussion
  * Conclusion
  * Keywords

I am about to board a flight from London to Dallas, having just arrived 
here from Cape Town, so I am jet-lagged and sleep-deprived.  Just the 
same, I will submit a manuscript once I arrive at Kansas City if nobody 
else can do it first (I just created an account for myself at the 
website, actually).  Are any of us attending the meeting in Taipei?  I 
hope you will volunteer to present on our behalf, if so!  I may be able 
to combine Taipei with a half-planned trip to Beijing, but that will 
probably involve some contortions.  I don't have a budget handy to 
attend this meeting.

I also hoped to send out a message to this list summarizing the current 
status of the leadership roles each of us has filled, but yesterday 
became pretty messy as I prepared for my departure for an extended visit 
to the United States.  I see that Reza has volunteered to help us with 
minimal information in the area of metabolomics.  Stefan gave a 
well-considered response to the editor role, saying that he was willing 
to help us navigate the document process.  Wout is happy to serve as 
secretary.  Dirk wrote affirming the need for qcML roles outside shotgun 
proteomics.  Mathias liked the idea of co-chairing and spurring us along 
with our web resources. *I'd still like to see a response from Weimin 
Zhu and Martin Eisenacher confirming their willingness to take on tasks*.

Okay, the lines to board are starting to form.  I hope to see amazing 
things when next I connect to the network!
Dave

Re: [Psidev-qc-dev] Organizational roundup

[Mathias W. <wa...@in...>]

Hi all,

thank you David, I for my part like it and am willing to take my role. 
regarding the metrics for 'new' tech, I will hopefully soon put something up on github, that will make it easy to oversee what we already have defined and easy to suggest/draft new metrics.
(https://github.com/HUPO-PSI/qcML-development/pull/21)

best,
 mths

----- Original Message -----
From: "Valkenborg Dirk" <dir...@vi...>
To: "David Tabb, Prof <dt...@su...>" <dt...@su...>, psi...@li...
Sent: Wednesday, 18 May, 2016 8:36:51 PM
Subject: Re: [Psidev-qc-dev] Organizational roundup





Looks good for me and I definitely agree that we need to extent the QC/QA to DIA, top-down and SRM. 



Regards, 

Dirk 





From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...] 
Sent: woensdag 18 mei 2016 14:18 
To: psi...@li... 
Subject: Re: [Psidev-qc-dev] Organizational roundup 



Hi, folks. 



I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday. If you would like to completely alter the associations of names with positions, that’s absolutely fine. I do want some feedback before I tell HUPO this is what we’re going to try, though. 



I would really value some emails such as, “yes, I am willing to fill that role” or “no, that doesn’t sound like a good role for me.” 



Thank you! 

Dave 





From: Tabb, David, Prof < dt...@su... > [ mailto:dt...@su... ] 
Sent: Friday, 06 May 2016 08:35 
To: psi...@li... 
Subject: [Psidev-qc-dev] Organizational roundup 



Hello, all! 



I am thrilled to have worked with you all at Ghent on April 19 th ! It is very refreshing to work with a group so willing to contribute to this new effort. 



For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting. I am using roles borrowed from this grid: http://www.psidev.info/roles . 



Chair: David Tabb 

Website/Co-Chair: Mathias Walzer 

Editor/Co-Chair: Stefan Tenzer 

Minimum Reporting Requirements: Weimin Zhu 

Ontology: Martin Eisenacher 

Secretary: Wout Bittremieux 



My rationale looks like this: 

We range considerably in our experience as researchers. I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here). I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0. I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short! J 



I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly. His initial development of the draft format is an impressive beginning upon which we can build. I think he will be an able co-chair. Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website. 



Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session. I think he will be a solid member of the team. I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management ( http://www.psidev.info/groups/psi-editors ). 



Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report. 



Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management. If he is willing to serve as our Ontology lead, we will be fortunate! 



Wout Bittremieux has already made great contributions to the software library aspect of the qcML format. I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts). 



If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it. I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate. 



Yes, I will attend ASMS in San Antonio, and I think that’s a great deadline for immediate goals. I would like to knock together an outline for the perspective/announcement. 



Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups. 



We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose. I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA). 



Thank you all for your willingness to take part in this push! 

Dave Indien deze e-mail een bevestiging is voor een vergadering bij VITO, dan dient u de afgedrukte versie aan de bewaking te tonen om toegang te krijgen tot de privéweg naar VITO. 
If this mail is a meeting confirmation at VITO, the printed version needs to be presented to the security in order to gain access to the private road leading to VITO. 

VITO Disclaimer: http://www.vito.be/e-maildisclaimer 
------------------------------------------------------------------------------
Mobile security can be enabling, not merely restricting. Employees who
bring their own devices (BYOD) to work are irked by the imposition of MDM
restrictions. Mobile Device Manager Plus allows you to control only the
apps on BYO-devices by containerizing them, leaving personal data untouched!
https://ad.doubleclick.net/ddm/clk/304595813;131938128;j
_______________________________________________
Psidev-qc-dev mailing list
Psi...@li...
https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev

Re: [Psidev-qc-dev] Organizational roundup

[Valkenborg D. <dir...@vi...>]

Looks good for me and I definitely agree that we need to extent the QC/QA to DIA, top-down and SRM.

Regards,
Dirk

From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
Sent: woensdag 18 mei 2016 14:18
To: psi...@li...
Subject: Re: [Psidev-qc-dev] Organizational roundup

Hi, folks.

I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday.  If you would like to completely alter the associations of names with positions, that's absolutely fine.  I do want some feedback before I tell HUPO this is what we're going to try, though.

I would really value some emails such as, "yes, I am willing to fill that role" or "no, that doesn't sound like a good role for me."

Thank you!
Dave

From: Tabb, David, Prof <dt...@su...<mailto:dt...@su...>> [mailto:dt...@su...]
Sent: Friday, 06 May 2016 08:35
To: psi...@li...<mailto:psi...@li...>
Subject: [Psidev-qc-dev] Organizational roundup

Hello, all!

I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.

For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.

Chair: David Tabb
Website/Co-Chair: Mathias Walzer
Editor/Co-Chair: Stefan Tenzer
Minimum Reporting Requirements: Weimin Zhu
Ontology: Martin Eisenacher
Secretary: Wout Bittremieux

My rationale looks like this:
We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  :)

I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.

Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).

Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.

Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!

Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).

If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.

Yes, I will attend ASMS in San Antonio, and I think that's a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.

Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.

We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).

Thank you all for your willingness to take part in this push!
Dave
Indien deze e-mail een bevestiging is voor een vergadering bij VITO, dan dient u de afgedrukte versie aan de bewaking te tonen om toegang te krijgen tot de priv?weg naar VITO.
If this mail is a meeting confirmation at VITO, the printed version needs to be presented to the security in order to gain access to the private road leading to VITO.

VITO Disclaimer: http://www.vito.be/e-maildisclaimer

Re: [Psidev-qc-dev] Organizational roundup

[Bittremieux W. <wou...@ua...>]

Hi Dave,

My apologies for not explicitly confirming sooner. I'll gladly take up the role of secretary, and I have no further remarks about the role distribution.

Kind regards,
Wout

> On 18 May 2016, at 14:17, Tabb, David, Prof <dt...@su...> <dt...@su...> wrote:
> 
> Hi, folks.
> 
> I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday.  If you would like to completely alter the associations of names with positions, that’s absolutely fine.  I do want some feedback before I tell HUPO this is what we’re going to try, though.
> 
> I would really value some emails such as, “yes, I am willing to fill that role” or “no, that doesn’t sound like a good role for me.”
> 
> Thank you!
> Dave
> 
> From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
> Sent: Friday, 06 May 2016 08:35
> To: psi...@li...
> Subject: [Psidev-qc-dev] Organizational roundup
> 
> Hello, all!
> 
> I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.
> 
> For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.
> 
> Chair: David Tabb
> Website/Co-Chair: Mathias Walzer
> Editor/Co-Chair: Stefan Tenzer
> Minimum Reporting Requirements: Weimin Zhu
> Ontology: Martin Eisenacher
> Secretary: Wout Bittremieux
> 
> My rationale looks like this:
> We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  J
> 
> I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.
> 
> Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).
> 
> Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.
> 
> Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!
> 
> Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).
> 
> If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.
> 
> Yes, I will attend ASMS in San Antonio, and I think that’s a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.
> 
> Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.
> 
> We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).
> 
> Thank you all for your willingness to take part in this push!
> Dave
> ------------------------------------------------------------------------------
> Mobile security can be enabling, not merely restricting. Employees who
> bring their own devices (BYOD) to work are irked by the imposition of MDM
> restrictions. Mobile Device Manager Plus allows you to control only the
> apps on BYO-devices by containerizing them, leaving personal data untouched!
> https://ad.doubleclick.net/ddm/clk/304595813;131938128;j_______________________________________________
> Psidev-qc-dev mailing list
> Psi...@li...
> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev

Re: [Psidev-qc-dev] Organizational roundup

[Tabb, D. P. <dt...@su...>]

Hi, folks.

I would like some feedback on this slate so that we can finalize our charter before I leave for the United States next Tuesday.  If you would like to completely alter the associations of names with positions, that's absolutely fine.  I do want some feedback before I tell HUPO this is what we're going to try, though.

I would really value some emails such as, "yes, I am willing to fill that role" or "no, that doesn't sound like a good role for me."

Thank you!
Dave

From: Tabb, David, Prof <dt...@su...> [mailto:dt...@su...]
Sent: Friday, 06 May 2016 08:35
To: psi...@li...
Subject: [Psidev-qc-dev] Organizational roundup

Hello, all!

I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.

For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.

Chair: David Tabb
Website/Co-Chair: Mathias Walzer
Editor/Co-Chair: Stefan Tenzer
Minimum Reporting Requirements: Weimin Zhu
Ontology: Martin Eisenacher
Secretary: Wout Bittremieux

My rationale looks like this:
We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  :)

I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.

Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).

Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.

Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!

Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).

If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.

Yes, I will attend ASMS in San Antonio, and I think that's a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.

Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.

We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).

Thank you all for your willingness to take part in this push!
Dave

[Psidev-qc-dev] Organizational roundup

[Tabb, D. P. <dt...@su...>]

Hello, all!

I am thrilled to have worked with you all at Ghent on April 19th!  It is very refreshing to work with a group so willing to contribute to this new effort.

For a first goal, I would like to nominate some roles for the core group of individuals who volunteered at the meeting.  I am using roles borrowed from this grid: http://www.psidev.info/roles.

Chair: David Tabb
Website/Co-Chair: Mathias Walzer
Editor/Co-Chair: Stefan Tenzer
Minimum Reporting Requirements: Weimin Zhu
Ontology: Martin Eisenacher
Secretary: Wout Bittremieux

My rationale looks like this:
We range considerably in our experience as researchers.  I understand that senior folks are going to have deeply split attention (my slow reply after Ghent reflects one example; I was teaching a solo four-day blitz in bioinformatics to the Honours students down here).  I know that we must have the enthusiasm and energy of the younger folks to drive this project to 1.0.  I propose myself as chair because I value time very deeply, and I intend to keep our meetings on-point and short!  :)

I enjoyed the enthusiasm Mathias Walzer shows for this effort, and I appreciate his establishing the GitHub site so rapidly.  His initial development of the draft format is an impressive beginning upon which we can build.  I think he will be an able co-chair.  Given his attention to GitHub, I think he will be well-placed to ensure our group is well-represented on the HUPO-PSI website.

Stefan Tenzer has volunteered to co-chair, and I appreciated the contributions he was able to make in the morning of our session.  I think he will be a solid member of the team.  I have also volunteered him as the editor for our team, which is a role that may require considerable effort since it involves document process management (http://www.psidev.info/groups/psi-editors).

Weimin Zhu has plenty of valuable experience from the mzData effort, and I think he would have good thoughts on which aspects of quality reporting are essential to a minimal report.

Martin Eisenacher seems to have highly relevant experience in format specificiation and ontology management.  If he is willing to serve as our Ontology lead, we will be fortunate!

Wout Bittremieux has already made great contributions to the software library aspect of the qcML format.  I hope he will be willing to work on our meeting reports (and assist in the construction of our various manuscripts).

If you would like to request a modified role or propose an altogether different roster, I would be happy to hear it.  I have not been organizationally involved with HUPO-PSI in the past, so I may not have the most useful experience for framing such a candidate slate.

Yes, I will attend ASMS in San Antonio, and I think that's a great deadline for immediate goals.  I would like to knock together an outline for the perspective/announcement.

Mathias, I liked your idea about sending an invite/announcement to the other HUPO-PSI groups.

We should start soon on identifying the major use cases for qcML and the applicability of various metrics to that purpose.  I particularly want to look at experimental types that are currently uncovered by quality metrics (such as top-down and DIA).

Thank you all for your willingness to take part in this push!
Dave