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From: Bielow, C. <Chr...@fu...> - 2024-06-11 19:45:16
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Dear all, Im currently on vacation and will abstain tomorrow. On another note: good news. Our paper got accepted today! Cheers Chris Am 11.06.2024 21:53 schrieb Wout Bittremieux <wou...@ua...>: Dear colleagues, We have our next teleconference tomorrow, Wednesday June 12th, at 16h00 CET (7h00 PST, 15h00 BST, 14h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Meeting ID: 311 403 481 845 Passcode: Jm4d4s Agenda items: * mzQC website<https://hupo-psi.github.io/mzQC/>: update documentation and examples * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit>: planning * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2024-06-11 18:53:19
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Dear colleagues, We have our next teleconference tomorrow, Wednesday June 12th, at 16h00 CET (7h00 PST, 15h00 BST, 14h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Meeting ID: 311 403 481 845 Passcode: Jm4d4s Agenda items: * mzQC website<https://hupo-psi.github.io/mzQC/>: update documentation and examples * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit>: planning * AOB. Best, Wout |
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From: Bielow, C. <Chr...@fu...> - 2024-05-29 13:59:29
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Dear colleagues, We have our next teleconference tomorrow, Wednesday May 29th, at 16h00 CET (7h00 PST, 15h00 BST, 14h00 GMT). Please use the following link to join: (Attention: Webex may require some time to start up) https://fu-berlin.webex.com/fu-berlin-en/j.php?MTID=m47d282d50d2e8e82630032e 746e2df27 Agenda items: * mzQC software libraries manuscript: revision ( <https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieG T2Js/edit> manuscript & <https://docs.google.com/document/d/1XDByyTl_ftbuPQ9lxlW_7PAGqrsHGf-G8esbaiR 7vLw/edit?usp=sharing> response to reviewers) cheers Chris -- Dr. Chris Bielow Bioinformatics Solution Center (BSC) www.bsc.fu-berlin.de Freie Universität Berlin, Institut für Informatik, Takustr. 9, room K21, 14195 Berlin Phone: +49 (0)30 838-63084, Email: Chris.Bielow(at)bsc.fu-berlin.de |
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From: Wout B. <wou...@ua...> - 2024-04-17 09:23:49
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Dear colleagues, We have our next teleconference today, Wednesday April 17th, at 15h00 CET (6h00 PST, 14h00 BST, 13h00 GMT). Note that this is one hour earlier than our usual meeting time! You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Meeting ID: 311 403 481 845 Passcode: Jm4d4s Agenda items: * Working group charter<https://www.psidev.info/quality-control-working-group-charter>: revise for the upcoming year * CV requests: precursor ppm (#254<https://github.com/HUPO-PSI/psi-ms-CV/pull/254>), missed cleavages & identified RT quarters (#255<https://github.com/HUPO-PSI/psi-ms-CV/pull/255>) * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit#heading=h.2vumqqn1kasd>: finalize * mzQC documentation and examples<https://hupo-psi.github.io/mzQC/>: updates * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit#heading=h.om262uy0elzx>: planning * AOB. Best, Wout |
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From: Sylvie R. <syl...@un...> - 2024-02-22 14:07:16
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Dear colleagues, dear members of the HUPO-PSI community, The HUPO Proteomics Standards Initiative (PSI) develops standards for documentation and storage of Proteomics data (see http://www.psidev.info for an overview of activities). The PSI Proteomics Informatics Working Group has submitted a new recommendation for consideration and review as a PSI standard. The mzIdentML document, draft of version 1.3.0, defines an XML schema that can be used to describe the outputs of proteomics search engines or similar software for peptide/protein identification from mass spectrometry(MS) data with an extension document for the identification of crosslinked peptides. After having been reviewed by the PSI steering group and revised as requested by an internal reviewer, the proposed documents, mzIdentML draft of version 1.3.0 and the crosslinking extension document, now go through the 45-day public and external review until*April 8^th , 2024*. The mzIdentML document (draft of version 1.3.0), a word document tracking changes from version 1.2.0, the crosslinking extension document, and the example files are available on GitHub as detailed below. *The mzIdentML document version 1.3.0, draft * https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_3-draft/mzIdentML1.3.0-draft_vJuly2023.pdf *A word document tracking changes from version 1.2.0* https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_3-draft/mzIdentML1.3.0-draft_vJuly2023_CC3%20JAV.docx *The crosslinking extension document* https://github.com/HUPO-PSI/mzIdentML/blob/master/specification_document/specdoc1_3-draft/mzIdentML%201.3.0%20Crosslinking%20Extension.pdf *The example files* https://github.com/HUPO-PSI/mzIdentML/tree/master/examples/1_3examples/crosslinking *The pre-print*is available at https://www.authorea.com/users/672647/articles/671627-mzidentml -1-3-0-essential-progress-on-the-support-of-crosslinking-and-other-identifications-based-on-multiple-spectra This message is to encourage you to contribute to the standards development activity by commenting on the documents. We invite both positive and negative comments on the relevance, correctness, clarity and appropriateness of the specification (e.g. is it presented in accordance with the templates and clearly written, is it sufficiently detailed and comprehensively described and are the examples in agreement with the specification?). Comments can be made on the specification as a whole or on specific parts. If you do not feel experienced enough to comment on this document, but know colleagues who are, please feel free to forward this message to them. There is no requirement that people commenting should have had any prior contact with the PSI. Please send your comments by e-mail directly to syl...@un... before*April 8th, 2024*. Thank you very much in advance for your help in improving PSI standards. Best wishes. Professor Sylvie RICARD-BLUM - PSI Editor Pericellular and Extracellular Supramolecular Assemblies UMR 5246 CNRS - University Lyon 1 Institute of Molecular and Supramolecular Chemistry and Biochemistry University Claude Bernard Lyon 1, 43 Boulevard du 11 novembre 1918 69622 Villeurbanne Cedex, France Phone: +33(0)4 72 44 82 32 E-mail: syl...@un... |
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From: Wout B. <wou...@ua...> - 2024-02-20 18:33:54
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Dear colleagues, We have our next teleconference tomorrow, Wednesday February 21st, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * Specification document<https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing>: Accepted in PSI document process! 🎉 Update to FINAL and synchronize PSI website and GitHub. * PSI Meeting 2024<https://www.psidev.info/hupo-psi-meeting-2024>: Program check-in. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit#heading=h.2vumqqn1kasd>: Review last meeting's action points and finalize. * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit#heading=h.om262uy0elzx> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2024-02-07 07:59:00
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Dear colleagues, We have our next teleconference today, Wednesday February 7, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * Specification document: Unfortunately no updates from the document process yet. * PSI Meeting 2024<https://www.psidev.info/hupo-psi-meeting-2024>: Program updates, if applicable. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit#heading=h.2vumqqn1kasd>: Review last meeting's action points and finalize. * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit#heading=h.om262uy0elzx> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2024-01-23 16:58:35
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Dear colleagues, We have our next teleconference tomorrow, Wednesday January 24, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * PSI Meeting 2024<https://www.psidev.info/hupo-psi-meeting-2024>: Program overview. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Review last meeting's action points and finalize. * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2024-01-10 09:40:45
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Dear colleagues, We have our next teleconference today, Wednesday January 10, at 16h00 CET (7h00 PST, 15h00 GMT). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * PSI Meeting 2024<https://www.psidev.info/hupo-psi-meeting-2024>: Compile program. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Submit? * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-12-18 10:10:46
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Dear colleagues, The registration for the 2024 PSI Meeting in Kyoto, Japan is now open: https://www.psidev.info/hupo-psi-meeting-2024 Registration options include in-person attendance as well as remote participation. In case of in-person attendance, you can apply for a $800 travel grant. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-12-13 08:14:13
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Dear colleagues, We have our next teleconference today, Wednesday December 13, at 16h00 CET (7h00 PST, 15h00 GMT, 17h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * Specification document<https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing>: Status update after resubmission to document process. * PSI Meeting 2024<https://www.psidev.info/hupo-psi-meeting-2024>: Working group representation? * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Finalize! * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>: Planning. * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-11-28 21:37:40
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Dear colleagues, We have our next teleconference tomorrow, Wednesday November 29, at 16h00 CET (7h00 PST, 15h00 GMT, 17h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). * Specification document<https://docs.google.com/document/d/132F3MBgDJgtFlXxDZhpJ1oHGbKL8pT6dk9fvL55L5_M/edit?usp=sharing>: Update on semantic validation & resubmit to document process. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Update on analysis & results. * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-11-14 18:22:08
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Dear colleagues, We have our next teleconference tomorrow, Wednesday November 15, at 16h00 CET (7h00 PST, 15h00 GMT, 17h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit> * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing> * AOB. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-10-03 16:33:16
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Dear colleagues, We have our next teleconference tomorrow, Wednesday October 4, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: update QC metrics use case (Colab notebook<https://colab.research.google.com/drive/1yDZWUrJ4affgfpp8FG2MPGSktOeOiCs1>). * mzQC specification manuscript<https://docs.google.com/document/d/1fYPqDBqFamcjXlzX0RMStPOKQD4aHlQd9JHJAfqcjqs/edit?usp=sharing>: status and planning. * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). If applicable, please communicate additional agenda items to the mailing list. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-09-05 23:35:44
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Dear colleagues, We have our next teleconference tomorrow, Wednesday September 6, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d * Meeting ID: 311 403 481 845 * Passcode: Jm4d4s Agenda items: * TDAuditor: Updates, CV term requests, and discussion (if applicable). * rmzqc: internal quotes in term decsriptions<https://github.com/MS-Quality-Hub/rmzqc/issues/21>. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: QC metrics update (Colab notebook<https://colab.research.google.com/drive/1yDZWUrJ4affgfpp8FG2MPGSktOeOiCs1>). * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). If applicable, please communicate additional agenda items to the mailing list. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-08-22 16:02:53
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Dear colleagues, We have our next teleconference tomorrow, Wednesday August 23, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * CV: Interpretation of CV terms moved to comments (PR 212<https://github.com/HUPO-PSI/psi-ms-CV/pull/212>, contributed by tnaake). * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). * TDAuditor: Updates, CV term requests, and discussion (if applicable). * mzQC validator: Update on online deployment. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: QC metrics from new MS files by Chris. If applicable, please communicate additional agenda items to the mailing list. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-08-08 11:21:36
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Dear colleagues, We have our next teleconference tomorrow, Wednesday August 9, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * CV: New MsQuality terms (PR 206<https://github.com/HUPO-PSI/psi-ms-CV/pull/206>). * CV: New term for contaminant identifications (issue 209<https://github.com/HUPO-PSI/psi-ms-CV/issues/209>). * CV: New terms for mzQC software tools examples (see Slack). * TDAuditor: Updates and discussion if necessary. * mzQC validator: Update on online deployment. * mzQC software libraries manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit>: Discuss QC metrics used to highlight library functionalities (see Slack). If applicable, please communicate additional agenda items to the mailing list. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-07-11 09:41:48
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Dear colleagues, We have our next teleconference tomorrow, Wednesday July 12, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * CV: CV terms for MsQuality<https://github.com/HUPO-PSI/psi-ms-CV/pull/206>. * CV: CV terms for top-down metrics. * mzQC software tools manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit?usp=sharing>: Finalize QC metrics use case. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-06-27 18:07:12
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Dear colleagues, We have our next teleconference tomorrow, Wednesday June 28, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * CV terms proposal for top-down metrics. * mzQC software tools manuscript<https://docs.google.com/document/d/1d-Il6MYJ5zQ-8UpabHe84L3Vau7bzuu5UZlTieGT2Js/edit?usp=sharing>: Address Juan's comments & discuss longitudinal QC metrics use case. Best, Wout |
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From: Bielow, C. <Chr...@fu...> - 2023-06-14 06:22:32
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Hey guys, Im on vacation this week. Feel free to assign tasks. I will look into it next week. Have a good meeting! Best, Chris Am 13.06.2023 17:25 schrieb Wout Bittremieux <wou...@ua...>: Dear colleagues, We have our next teleconference tomorrow, Wednesday June 14, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * Working group charter: Please comment on the updated working group charter here<https://docs.google.com/document/d/1M9bQv2TKbqChqC4R0QOf1-Jo7iZiN3tRb03Gl09TZ0k/edit> before inclusion on the new PSI website. * CV terms for quality control in top-down proteomics proposed by Dave. * mzQC software tools manuscript: Discuss mzQC tools use case based on the updated mzQC files Mathias has shared on Slack. Best, Wout |
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From: Wout B. <wou...@ua...> - 2023-06-13 15:25:00
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Dear colleagues, We have our next teleconference tomorrow, Wednesday June 14, at 16h00 CEST (7h00 PDT, 14h00 GMT, 15h00 BST, 16h00 SAST). You can connect to our teleconference on Microsoft Teams through the following link: https://teams.microsoft.com/l/meetup-join/19%3ameeting_MzNhNGFmODEtY2QxZi00MTAyLTlkODMtMDBiNTgxMzNkMWQx%40thread.v2/0?context=%7b%22Tid%22%3a%22792e08fb-2d54-4a8e-af72-202548136ef6%22%2c%22Oid%22%3a%2242f2bf26-cfd5-4653-8e93-217e647f61b0%22%7d Agenda items: * Working group charter: Please comment on the updated working group charter here<https://docs.google.com/document/d/1M9bQv2TKbqChqC4R0QOf1-Jo7iZiN3tRb03Gl09TZ0k/edit> before inclusion on the new PSI website. * CV terms for quality control in top-down proteomics proposed by Dave. * mzQC software tools manuscript: Discuss mzQC tools use case based on the updated mzQC files Mathias has shared on Slack. Best, Wout |
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From: R S. <r7...@gm...> - 2023-05-27 15:46:59
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Congratulations Wout, well deserved! Best Wishes, Reza ________________________________ From: ed <era...@gm...> Sent: Saturday, May 27, 2023 11:18:38 AM To: David TABB <dav...@pa...> Cc: ps...@eb... <ps...@eb...>; psi...@li... <psi...@li...> Subject: Re: [Psidev-qc-dev] Election Results: Wout Bittremieux new chair of QC! Congrats Wout and Dave! Best wishes for the new positions. On Thu, May 25, 2023 at 10:39 AM David TABB <dav...@pa...<mailto:dav...@pa...>> wrote: Hi, everyone. I am delighted to report that the QC Working Group has elected a new chair: Wout Bittremieux (wou...@ua...<mailto:wou...@ua...>). Wout is an assistant research profesor at the University of Antwerp. A founding member of the HUPO-PSI QC Working Group in 2016, he has played a key role in publications and the mzQC specification documentation resulting from this team, not to mention his enduring effort to ensure the group has regular recorded meetings. From the beginning, Wout has been essential personnel to the QC team. Dave Tabb will be retiring from the role of QC Working Group Chair, shifting to an informal role as "Chair Emeritus." Thank you so much for your willingness to take on this role, Wout! Dave _______________________________________________ Psidev-qc-dev mailing list Psi...@li...<mailto:Psi...@li...> https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev -- Eralp DOGU, PhD Assoc. Prof., Department of Statistics <http://www.linkedin.com/in/eralpdogu>Mugla Sitki Kocman University, Phone: +902522115446 era...@mu...<mailto:era...@mu...>, era...@gm...<mailto:era...@gm...> https://sites.google.com/site/eralpdogu/ |
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From: ed <era...@gm...> - 2023-05-27 10:18:57
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Congrats Wout and Dave! Best wishes for the new positions. On Thu, May 25, 2023 at 10:39 AM David TABB <dav...@pa...> wrote: > Hi, everyone. > > > I am delighted to report that the QC Working Group has elected a new > chair: * Wout Bittremieux* (wou...@ua...). Wout is an > assistant research profesor at the University of Antwerp. A founding > member of the HUPO-PSI QC Working Group in 2016, he has played a key role > in publications and the mzQC specification documentation resulting from > this team, not to mention his enduring effort to ensure the group has > regular recorded meetings. From the beginning, Wout has been essential > personnel to the QC team. > > > Dave Tabb will be retiring from the role of QC Working Group Chair, > shifting to an informal role as "Chair Emeritus." > > > Thank you so much for your willingness to take on this role, Wout! > > Dave > _______________________________________________ > Psidev-qc-dev mailing list > Psi...@li... > https://lists.sourceforge.net/lists/listinfo/psidev-qc-dev > -- Eralp DOGU, PhD Assoc. Prof., Department of Statistics <http://www.linkedin.com/in/eralpdogu>Mugla Sitki Kocman University, Phone: +902522115446 era...@mu..., era...@gm... https://sites.google.com/site/eralpdogu/ |
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