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From: Kai R. <kr...@us...> - 2003-09-15 13:27:34
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Date: Monday September 15, 2003 @ 6:27 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv27238 Modified Files: DataArray.java Log Message: The data array is now simplified to one single Vector. |
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From: Kai R. <kr...@us...> - 2003-09-15 13:00:12
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Date: Monday September 15, 2003 @ 6:00 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv20722 Removed Files: TestUnmarshaller.java Log Message: Currently there is no unmarshalling code, so cannot be tested... |
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From: Kai R. <kr...@us...> - 2003-09-15 12:56:33
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Date: Monday September 15, 2003 @ 5:56 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv19851/org/psi/ms/test Modified Files: TestDtaReader.java TestDtaSetConverter.java Log Message: Adapted the test code to the new output class MzDataWriter. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:55:24
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Date: Monday September 15, 2003 @ 5:55 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv19621 Modified Files: ParsingBusiness.java Log Message: Removed some exception catchers as these exceptions are not thrown any more. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:54:25
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Date: Monday September 15, 2003 @ 5:54 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv19299 Modified Files: DtaSetConverter.java Log Message: Removed all references to Castor and output configuration references to DtaReader. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:53:04
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Date: Monday September 15, 2003 @ 5:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv18695 Modified Files: DtaReader.java Log Message: The converter creates only the RawDataType classes, as the output is now configurated by the output class MzDataWriter and not by the data model anymore (which was rubbish anyway). |
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From: Kai R. <kr...@us...> - 2003-09-15 12:46:46
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Date: Monday September 15, 2003 @ 5:46 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv17620 Modified Files: MzData.java Log Message: Removed the adding of dataProcessing object into the Test constructor. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:45:00
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Date: Monday September 15, 2003 @ 5:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper In directory sc8-pr-cvs1:/tmp/cvs-serv16871 Modified Files: PsiMsConverterException.java Log Message: Extended the exception by adding constructors with message and throwable arguments. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:44:00
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Date: Monday September 15, 2003 @ 5:43 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv16686 Modified Files: Test.java Log Message: Adds now per default the data processing information for the converter. |
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From: Kai R. <kr...@us...> - 2003-09-15 12:42:41
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Date: Monday September 15, 2003 @ 5:42 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv16151 Modified Files: MzDataWriter.java Log Message: Corrected the output of Date elements to XML format xs:dateTime Added an internal class OutputType The m/z and intensity array output is now defined by the setting of the OutputType value in this class. The Binary classes are no longer necessary. |
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From: Kai R. <kr...@us...> - 2003-09-15 10:31:50
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Date: Monday September 15, 2003 @ 3:31 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv20005 Modified Files: RawDataType.java Log Message: getFloat() returns now a List of Float object, not a float[] array any more. |
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From: Kai R. <kr...@us...> - 2003-09-12 16:13:52
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Date: Friday September 12, 2003 @ 9:13 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv22595 Modified Files: build.xml Log Message: The swing application is now the default application started by java -jar application/converter.jar |
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From: Kai R. <kr...@us...> - 2003-09-12 16:04:56
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Date: Friday September 12, 2003 @ 9:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv21274 Modified Files: MzDataWriter.java Log Message: A bit of cleanup |
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From: Kai R. <kr...@us...> - 2003-09-12 15:59:24
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Date: Friday September 12, 2003 @ 8:59 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/lib Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/lib In directory sc8-pr-cvs1:/tmp/cvs-serv18655 Added Files: xpp3-1.1.3.4-RC3.jar Log Message: An XML pull-parser (see http://www.xmlpull.org/ for more info.) used by the MzDataReader and MzDataWriter classes. |
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From: Kai R. <kr...@us...> - 2003-09-12 15:56:46
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Date: Friday September 12, 2003 @ 8:56 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv16148 Modified Files: CvCoreParamType.java CvUserParamType.java DataArray.java RawDataType.java Log Message: Started to used the MultiTypeValue class. Soon the classes RawDataType, CvCoreParamType and CvUserParamType will become incompatible with Castor, meaning they cannot be marshalled into desired format without heavy compile-time configuration and not at all with runtime-configuration. On the other hand they won't be any longer a pain in the arse to use. Also all the *Binary and *BinaryType classes will become obsolete. :-) |
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From: Kai R. <kr...@us...> - 2003-09-12 15:49:17
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Date: Friday September 12, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv15350/xml Added Files: MzDataWriter.java Log Message: First version of an XML marshaller without dependency on Castor. It's not thoroughly tested yet! All compulsory data is written correctly, that is MSV is not complaining. |
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From: Kai R. <kr...@us...> - 2003-09-12 15:42:20
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Date: Friday September 12, 2003 @ 8:42 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv14483/xml Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml added to the repository |
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From: Lawrence B. <lb...@us...> - 2003-09-12 14:42:12
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Date: Friday September 12, 2003 @ 7:42 Author: lbower http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv31543 Added Files: AdminPanel.java Log Message: adding AdminPanel |
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From: Lawrence B. <lb...@us...> - 2003-09-12 14:36:33
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Date: Friday September 12, 2003 @ 7:36 Author: lbower http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv30071 Added Files: ContainedJComponent.java DirectoryChooserPanel.java DirectoryPanel.java InstrumentSettingsPanel.java MainPanel.java ParsingBusiness.java PersistentWindows.java ProgressPanel.java TestPanel.java Log Message: added all files for the swing component - documentation will follow... |
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From: Lawrence B. <lb...@us...> - 2003-09-12 14:34:09
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Date: Friday September 12, 2003 @ 7:34 Author: lbower http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv29576/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing added to the repository |
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From: Kai R. <kr...@us...> - 2003-09-11 16:31:57
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Date: Thursday September 11, 2003 @ 9:31 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv3632 Added Files: MultiTypeValue.java Log Message: This class is used for the CV classes as it is possible to have different (but limited number of) types of values in these CVs. I think this approach is also more flexible than the dodgy *Choice approach Castor creates. |
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From: Kai R. <kr...@us...> - 2003-09-11 15:39:04
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Date: Thursday September 11, 2003 @ 8:38 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv26283 Modified Files: DtaSetConverter.java Added Files: ParseListener.java Log Message: Lawrence added a ParseListener interface for communication with the GUI he's written. |
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From: Kai R. <kr...@us...> - 2003-09-10 18:13:16
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Date: Wednesday September 10, 2003 @ 11:13 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv25401 Modified Files: build.xml Log Message: Bugfix: dist was complaining about including converter.zip in itself. Fixed. |
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From: Kai R. <kr...@us...> - 2003-09-10 17:06:09
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Date: Wednesday September 10, 2003 @ 10:06 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv9787 Modified Files: build.xml Log Message: Rearranged the build file. Instead of the "deploy" target there is now a "application" target which creates a jar file runable with java -jar The "dist" target now includes this application as well. |
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From: Kai R. <kr...@us...> - 2003-09-10 17:04:23
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Date: Wednesday September 10, 2003 @ 10:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv9616 Modified Files: .cvsignore Log Message: Ignore the distribution and javadoc directories as well. |
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