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From: Kai R. <kr...@us...> - 2003-12-03 17:45:41
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Date: Wednesday December 3, 2003 @ 9:45 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta/src Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta/src In directory sc8-pr-cvs1:/tmp/cvs-serv14557/plugins/dta/src Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta/src added to the repository |
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From: Kai R. <kr...@us...> - 2003-12-03 17:45:32
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Date: Wednesday December 3, 2003 @ 9:45 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta In directory sc8-pr-cvs1:/tmp/cvs-serv14536/plugins/dta Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins/dta added to the repository |
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From: Kai R. <kr...@us...> - 2003-12-03 17:45:25
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Date: Wednesday December 3, 2003 @ 9:45 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/plugins Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins In directory sc8-pr-cvs1:/tmp/cvs-serv14511/plugins Log Message: Directory /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/plugins added to the repository |
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From: Kai R. <kr...@us...> - 2003-12-03 17:45:03
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Date: Wednesday December 3, 2003 @ 9:45 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv14157/swing Modified Files: MainPanel.java ParsingBusiness.java Log Message: Quick that the GUI works with the new plugin system. ParsingBusiness should be fine as it is, but the MainPanel class needs to be changed that it instantiate the Desc object from the supporting ImporterI implementation. |
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From: Kai R. <kr...@us...> - 2003-12-03 17:41:27
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Date: Wednesday December 3, 2003 @ 9:41 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv13663/xml Modified Files: MzDataWriter.java Log Message: Implements now the ExporterI interface as first step into having several output possibilities (e.g. XML _and_ DB). |
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From: Kai R. <kr...@us...> - 2003-12-03 17:36:27
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Date: Wednesday December 3, 2003 @ 9:36 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv12838 Added Files: ExporterI.java ImporterLoader.java Removed Files: DtaReader.java DtaSetImporter.java Log Message: These moved to the plugins directory. |
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From: Kai R. <kr...@us...> - 2003-12-01 11:49:06
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Date: Monday December 1, 2003 @ 3:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15676 Modified Files: build.xml Log Message: Added log4j-1.2.7.jar as dependency. |
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From: Kai R. <kr...@us...> - 2003-11-28 17:08:26
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Date: Friday November 28, 2003 @ 9:08 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/lib Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/lib In directory sc8-pr-cvs1:/tmp/cvs-serv19637 Added Files: log4j-1.2.7.jar Log Message: Added log4j.jar |
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From: Kai R. <kr...@us...> - 2003-11-28 15:54:28
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Date: Friday November 28, 2003 @ 7:54 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv6375 Modified Files: converter_Kai.ipr converter_Kai.iws Log Message: new version |
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From: Kai R. <kr...@us...> - 2003-11-28 15:53:56
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Date: Friday November 28, 2003 @ 7:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv6092 Modified Files: MzDataWriter.java Log Message: Adapted to new processing procedure: removed marshall(MzData) remove marshall(AcquisitionList) made marshall(Acquistion) public added initialize(MzData, acquisitionCount) and finish() |
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From: Kai R. <kr...@us...> - 2003-11-28 15:51:36
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Date: Friday November 28, 2003 @ 7:51 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv5840 Modified Files: Analyzer.java MzData.java ProcessingMethod.java Log Message: Added more default values to avoid null pointer exceptions and cleaned up the constructor of the MzData class. |
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From: Kai R. <kr...@us...> - 2003-11-28 15:49:46
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Date: Friday November 28, 2003 @ 7:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv5526 Modified Files: ImporterI.java Log Message: Renamed "getAboutImporter" to "getImporterDescription" and added "getImporterName". |
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From: Kai R. <kr...@us...> - 2003-11-28 15:48:24
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Date: Friday November 28, 2003 @ 7:48 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv5218 Modified Files: DtaSetImporter.java Log Message: Cleaned up the legacy method "convertDirectory". Should disappear soon anyway. |
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From: Kai R. <kr...@us...> - 2003-11-28 15:46:51
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Date: Friday November 28, 2003 @ 7:46 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv4776 Modified Files: ParseListener.java Log Message: Added the methods "setMax" and "increase" for having more control over the progress bar. |
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From: Kai R. <kr...@us...> - 2003-11-28 14:16:46
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Date: Friday November 28, 2003 @ 6:16 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv20215 Modified Files: TestDtaSetConverter.java Removed Files: TestDtaReader.java Log Message: No longer needed. |
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From: Kai R. <kr...@us...> - 2003-11-21 15:32:15
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Date: Friday November 21, 2003 @ 7:32 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15820 Modified Files: ImporterI.java Log Message: Added method getAboutImporter() Corrected the JavaDoc for the method getProvidedData() |
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From: Kai R. <kr...@us...> - 2003-11-21 15:25:15
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Date: Friday November 21, 2003 @ 7:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv14287 Added Files: ProvidedDataItem.java Log Message: This class defines which data items a importer implementation can provide. |
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From: Kai R. <kr...@us...> - 2003-11-21 15:24:08
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Date: Friday November 21, 2003 @ 7:24 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper In directory sc8-pr-cvs1:/tmp/cvs-serv14093 Added Files: MarshallCodeGenerator.java ProvidedDataTypeGenerator.java Log Message: Added the two helper classes I use for generating some of code. |
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From: Kai R. <kr...@us...> - 2003-11-14 16:51:38
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Date: Friday November 14, 2003 @ 8:51 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv23886 Modified Files: mzdata.xsd Log Message: -one acqDesc element per acquisition -several dataArray/dataArrayBinary available -dataArray and datArrayBinary get an attribute ID and supDesc's ID attribute gets changed into a ref attribute |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:32
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:32
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv23169/test/org/psi/ms/test Modified Files: TestDtaReader.java TestDtaSetConverter.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:31
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/model Modified Files: AcqDesc.java Acquisition.java Admin.java Analyzer.java Desc.java Detector.java InstrumentCommonSettings.java MzData.java Person.java Precursor.java ProcessingMethod.java Source.java Supplement.java Test.java Removed Files: AcqDescList.java Raw.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-14 16:49:31
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Date: Friday November 14, 2003 @ 8:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv23169/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetImporter.java Log Message: Re-arranged the model so that it reflects the changes to the XML schema. Implemented the ImporterI interface with the DtaSetImporter. |
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From: Kai R. <kr...@us...> - 2003-11-14 11:49:34
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Date: Friday November 14, 2003 @ 3:49 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv31911 Modified Files: mzdata.xsd Log Message: The acquisition ID is no longer necessary. |
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From: Kai R. <kr...@us...> - 2003-11-10 10:21:15
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Date: Monday November 10, 2003 @ 2:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv15448/java/org/psi/ms/swing Modified Files: ParsingBusiness.java Log Message: Renamed: ConverterI -> ImporterI DtaSetConverter -> DtaSetImporter |
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