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From: Kai R. <kr...@us...> - 2003-11-10 10:21:15
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Date: Monday November 10, 2003 @ 2:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15448/java/org/psi/ms/converter Added Files: DtaSetImporter.java ImporterI.java Removed Files: ConverterI.java DtaSetConverter.java Log Message: Renamed: ConverterI -> ImporterI DtaSetConverter -> DtaSetImporter |
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From: Kai R. <kr...@us...> - 2003-11-10 10:21:15
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Date: Monday November 10, 2003 @ 2:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv15448/java/org/psi/ms/model Modified Files: Desc.java Log Message: Renamed: ConverterI -> ImporterI DtaSetConverter -> DtaSetImporter |
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From: Kai R. <kr...@us...> - 2003-11-10 10:21:15
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Date: Monday November 10, 2003 @ 2:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv15448/test/org/psi/ms/test Modified Files: TestDtaSetConverter.java Log Message: Renamed: ConverterI -> ImporterI DtaSetConverter -> DtaSetImporter |
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From: Kai R. <kr...@us...> - 2003-11-07 18:06:40
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Date: Friday November 7, 2003 @ 10:06 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv16244 Modified Files: mzdata.xsd Log Message: Removed several obsolete ID attributes. |
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From: Kai R. <kr...@us...> - 2003-11-07 18:04:45
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Date: Friday November 7, 2003 @ 10:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15926 Added Files: ConverterI.java Log Message: In order to be accepted as a importer module each converter must implement this interface. |
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From: Kai R. <kr...@us...> - 2003-11-06 17:18:16
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Date: Thursday November 6, 2003 @ 9:18 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv21696 Modified Files: mzdata.xsd Log Message: renamed desc to acqDesc |
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From: Kai R. <kr...@us...> - 2003-11-06 16:02:01
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Date: Thursday November 6, 2003 @ 8:02 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv6405 Modified Files: mzdata.xsd Log Message: Merged the primary and supplement data into one single acqisition element. This simplifies proccessing and conversion of vendor-specific data and also improves the processing of our format. |
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From: Kai R. <kr...@us...> - 2003-10-23 15:06:55
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Date: Thursday October 23, 2003 @ 8:03 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv9746 Modified Files: build.xml Log Message: Made the build-file structure more flexible. |
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From: Kai R. <kr...@us...> - 2003-10-20 16:57:41
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Date: Monday October 20, 2003 @ 3:03 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv29970/src/java/org/psi/ms/model Modified Files: AcqTime.java CvCoreParamType.java CvUserParamType.java MzRange.java Log Message: Adapted the converter output to the following schema changes: Changed the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) |
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From: Kai R. <kr...@us...> - 2003-10-20 12:02:10
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Date: Monday October 20, 2003 @ 3:03 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/xml In directory sc8-pr-cvs1:/tmp/cvs-serv29970/src/java/org/psi/ms/xml Modified Files: MzDataWriter.java Log Message: Adapted the converter output to the following schema changes: Changed the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) |
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From: Kai R. <kr...@us...> - 2003-10-20 11:33:05
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Date: Monday October 20, 2003 @ 3:03 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv29970/intellij Modified Files: converter_Kai.iws Log Message: Adapted the converter output to the following schema changes: Changed the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) |
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From: Kai R. <kr...@us...> - 2003-10-20 10:07:59
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Date: Monday October 20, 2003 @ 2:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData Update of /cvsroot/psidev/psi/psi-ms/xml/mzData In directory sc8-pr-cvs1:/tmp/cvs-serv25769 Modified Files: mzdata.xsd Log Message: Change the type of M/Z range from int to float (line 484) Renamed "instrument" to "acqInst" (line 577) Changed acqTime from dataTime to float (line 581) (now the unit attribute makes actually sense) Changed acqID from required to optional (line 633) Removed two empty sequence elements |
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From: Kai R. <kr...@us...> - 2003-09-18 14:23:54
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Date: Thursday September 18, 2003 @ 7:23 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv2767/intellij Modified Files: converter_Kai.iws Log Message: Renamed the button "parse" to "convert" and the window title to "PSI-MS converter". |
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From: Kai R. <kr...@us...> - 2003-09-18 14:23:54
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Date: Thursday September 18, 2003 @ 7:23 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv2767/src/java/org/psi/ms/swing Modified Files: MainPanel.java Log Message: Renamed the button "parse" to "convert" and the window title to "PSI-MS converter". |
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From: Lawrence B. <lb...@us...> - 2003-09-18 13:10:23
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Date: Thursday September 18, 2003 @ 6:10 Author: lbower http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv19421/src/java/org/psi/ms/swing Added Files: FloatField.java OutputTypePanel.java Log Message: adding FloatField and OutputTypeField |
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From: Lawrence B. <lb...@us...> - 2003-09-18 12:53:02
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Date: Thursday September 18, 2003 @ 5:53 Author: lbower http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv14487/src/java/org/psi/ms/swing Modified Files: AdminPanel.java DirectoryChooserPanel.java DirectoryPanel.java InstrumentSettingsPanel.java MainPanel.java ParsingBusiness.java TestPanel.java Log Message: changes to layout of MainPanel, new component for selecting output type |
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From: Kai R. <kr...@us...> - 2003-09-17 15:53:56
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Date: Wednesday September 17, 2003 @ 8:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv15130/src/test/org/psi/ms/test Modified Files: TestDtaSetConverter.java Log Message: Bugfix: The "busy" message printed only the names of the .dta files. Fixed. |
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From: Kai R. <kr...@us...> - 2003-09-17 15:53:56
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Date: Wednesday September 17, 2003 @ 8:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv15130/src/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: Bugfix: The "busy" message printed only the names of the .dta files. Fixed. |
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From: Kai R. <kr...@us...> - 2003-09-17 15:53:55
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Date: Wednesday September 17, 2003 @ 8:53 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv15130/intellij Modified Files: converter_Kai.ipr converter_Kai.iws Log Message: Bugfix: The "busy" message printed only the names of the .dta files. Fixed. |
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From: Kai R. <kr...@us...> - 2003-09-17 13:25:51
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Date: Wednesday September 17, 2003 @ 6:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv11922/java/org/psi/ms/swing Modified Files: ParsingBusiness.java Log Message: Added the parameter MzDataWriter.OutputType to the method convertDirectory of DtaSetConverter and change ParsingBusiness and TestDtaSetConvert accordingly. |
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From: Kai R. <kr...@us...> - 2003-09-17 13:25:51
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Date: Wednesday September 17, 2003 @ 6:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv11922/test/org/psi/ms/test Modified Files: TestDtaSetConverter.java Log Message: Added the parameter MzDataWriter.OutputType to the method convertDirectory of DtaSetConverter and change ParsingBusiness and TestDtaSetConvert accordingly. |
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From: Kai R. <kr...@us...> - 2003-09-17 13:25:51
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Date: Wednesday September 17, 2003 @ 6:25 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv11922/java/org/psi/ms/converter Modified Files: DtaSetConverter.java Log Message: Added the parameter MzDataWriter.OutputType to the method convertDirectory of DtaSetConverter and change ParsingBusiness and TestDtaSetConvert accordingly. |
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From: Kai R. <kr...@us...> - 2003-09-15 13:44:58
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Date: Monday September 15, 2003 @ 6:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv30243 Modified Files: Acquisition.java Supplement.java Removed Files: DataArrayBinary.java IntenArrayBinary.java MzArrayBinary.java MzArrayBinaryType.java Log Message: Removed all *Binary classes. These classes are obsolete as an object model should not depend on the desired output. That is the task of the MzDataWriter class. |
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From: Kai R. <kr...@us...> - 2003-09-15 13:37:01
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Date: Monday September 15, 2003 @ 6:36 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv29082 Modified Files: build.xml Log Message: Removed all references to Castor and Xerces. |
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From: Kai R. <kr...@us...> - 2003-09-15 13:28:08
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Date: Monday September 15, 2003 @ 6:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/swing In directory sc8-pr-cvs1:/tmp/cvs-serv27429 Modified Files: ParsingBusiness.java Log Message: Removed all references to Castor. |
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