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From: Kai R. <kr...@us...> - 2003-08-22 10:59:31
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Date: Thursday August 21, 2003 @ 5:23 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv28255 Modified Files: AcqDesc.java Acquisition.java Admin.java DataArray.java DataArrayBinary.java Precursor.java ProcessingMethod.java Software.java SourceFile.java Summary.java SupDesc.java Supplement.java Test.java Removed Files: AcqDescType.java AcquisitionType.java AdminType.java DataArrayBinaryType.java PrecursorType.java ProcessingMethodType.java SoftwareType.java SourceFileType.java SummaryType.java SupDescType.java SuppDataType.java SupplementType.java TestType.java Log Message: More *Type.java classes merged with their *.java class |
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From: Kai R. <kr...@us...> - 2003-08-22 09:08:24
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Date: Thursday August 21, 2003 @ 3:58 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/xml In directory sc8-pr-cvs1:/tmp/cvs-serv8944/xml Modified Files: mzDataXMLMapping.xml Log Message: Removed most of the "type" classes and moved classes for controlled vocabulary into internal classes. Adapted the mappings file for correct output. |
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From: Kai R. <kr...@us...> - 2003-08-22 08:11:42
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Date: Thursday August 21, 2003 @ 7:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/helper In directory sc8-pr-cvs1:/tmp/cvs-serv16342/java/org/psi/ms/helper Modified Files: PsiMsConverterException.java SuffixFileFilter.java Utils.java Log Message: Optimised imports |
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From: Kai R. <kr...@us...> - 2003-08-22 08:11:41
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Date: Thursday August 21, 2003 @ 7:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv16342/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Optimised imports |
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From: Kai R. <kr...@us...> - 2003-08-22 06:15:45
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Date: Thursday August 21, 2003 @ 7:28 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv16342/java/org/psi/ms/model Modified Files: AcqDescList.java AcqParam.java AcqSettings.java AcqTime.java AcqUserParam.java AcquisitionList.java Analyzer.java BaseIon.java Contact.java CvCoreParamType.java CvCoreParamTypeChoice.java CvUserParamType.java CvUserParamTypeChoice.java DataArray.java DataProcessing.java Desc.java Detector.java InstParam.java InstUserParam.java InstrumentAcqSettings.java IntenArray.java IntenArrayBinary.java Ion.java IonType.java List.java MzArray.java MzArrayBinary.java MzArrayBinaryType.java MzData.java MzRange.java PersonType.java PrecursorList.java Range.java Raw.java RawDataType.java Source.java SupDescList.java SupParam.java SupUserParam.java SupplementList.java TestParam.java TestUserParam.java Log Message: Optimised imports |
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From: Kai R. <kr...@us...> - 2003-08-22 02:59:07
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Date: Thursday August 21, 2003 @ 3:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv2132/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Removed class ActivationType and made the class ActivationTypeMethodType internal class Activation.Method |
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From: Kai R. <kr...@us...> - 2003-08-22 02:59:06
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Date: Thursday August 21, 2003 @ 3:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv2132/java/org/psi/ms/model Modified Files: Activation.java Removed Files: ActivationType.java Log Message: Removed class ActivationType and made the class ActivationTypeMethodType internal class Activation.Method |
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From: Kai R. <kr...@us...> - 2003-08-22 02:42:46
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Date: Thursday August 21, 2003 @ 2:47 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv32603/intellij Modified Files: converter_Kai.iws Log Message: corrected the javadoc package name. |
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From: Kai R. <kr...@us...> - 2003-08-22 02:41:14
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Date: Thursday August 21, 2003 @ 2:47 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter In directory sc8-pr-cvs1:/tmp/cvs-serv32603 Modified Files: build.xml Log Message: corrected the javadoc package name. |
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From: Kai R. <kr...@us...> - 2003-08-21 16:12:37
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Date: Thursday August 21, 2003 @ 3:58 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv8944/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Removed most of the "type" classes and moved classes for controlled vocabulary into internal classes. Adapted the mappings file for correct output. |
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From: Kai R. <kr...@us...> - 2003-08-21 16:12:28
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Date: Thursday August 21, 2003 @ 3:58 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv8944/java/org/psi/ms/model Modified Files: AcqSettings.java AcqSpecification.java AcqTime.java Analyzer.java Data.java Desc.java Detector.java InstrumentCommonSettingsType.java Source.java Added Files: InstrumentAcqSettings.java InstrumentCommonSettings.java Removed Files: AnalyzerType.java DetectorType.java Instrument.java Instrument2.java InstrumentAcqSettingsType.java SourceType.java Log Message: Removed most of the "type" classes and moved classes for controlled vocabulary into internal classes. Adapted the mappings file for correct output. |
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From: Kai R. <kr...@us...> - 2003-08-21 15:38:40
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Date: Thursday August 21, 2003 @ 3:04 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types In directory sc8-pr-cvs1:/tmp/cvs-serv2132/java/org/psi/ms/model/types Removed Files: ActivationTypeMethodType.java Log Message: Removed class ActivationType and made the class ActivationTypeMethodType internal class Activation.Method |
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From: Kai R. <kr...@us...> - 2003-08-20 19:40:09
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Date: Wednesday August 20, 2003 @ 10:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types In directory sc8-pr-cvs1:/tmp/cvs-serv13015/java/org/psi/ms/model/types Removed Files: AcqSettingsTypeSpecTypeType.java Log Message: Replaced the class AcqSettingsTypeSpecTypeType by the internal class AcqSettingsType.SpecType |
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From: Kai R. <kr...@us...> - 2003-08-20 19:04:58
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Date: Wednesday August 20, 2003 @ 10:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv13015/java/org/psi/ms/model Modified Files: AcqSettingsType.java AcquisitionType.java RawDataType.java SuppDataType.java Log Message: Replaced the class AcqSettingsTypeSpecTypeType by the internal class AcqSettingsType.SpecType |
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From: Kai R. <kr...@us...> - 2003-08-20 19:04:56
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Date: Wednesday August 20, 2003 @ 10:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/xml In directory sc8-pr-cvs1:/tmp/cvs-serv13015/xml Modified Files: mzDataXMLMapping.xml Log Message: Replaced the class AcqSettingsTypeSpecTypeType by the internal class AcqSettingsType.SpecType |
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From: Kai R. <kr...@us...> - 2003-08-20 19:04:55
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Date: Wednesday August 20, 2003 @ 10:21 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv13015/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Replaced the class AcqSettingsTypeSpecTypeType by the internal class AcqSettingsType.SpecType |
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From: Kai R. <kr...@us...> - 2003-08-20 18:25:17
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Date: Wednesday August 20, 2003 @ 11:12 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv21157/java/org/psi/ms/converter Modified Files: DtaReader.java Log Message: Transferred all methods of AcqSettingsType to AcqSettings. |
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From: Kai R. <kr...@us...> - 2003-08-20 18:25:17
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Date: Wednesday August 20, 2003 @ 11:12 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv21157/java/org/psi/ms/model Modified Files: AcqSettings.java Removed Files: AcqSettingsType.java Log Message: Transferred all methods of AcqSettingsType to AcqSettings. |
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From: Kai R. <kr...@us...> - 2003-08-20 18:15:22
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Date: Wednesday August 20, 2003 @ 11:12 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/xml In directory sc8-pr-cvs1:/tmp/cvs-serv21157/xml Modified Files: mzDataXMLMapping.xml Log Message: Transferred all methods of AcqSettingsType to AcqSettings. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:36:28
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/intellij Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/intellij In directory sc8-pr-cvs1:/tmp/cvs-serv5680/intellij Modified Files: converter_Kai.ipr converter_Kai.iws Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:29:21
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/java/org/psi/ms/model Modified Files: AcquisitionType.java Removed Files: AcqDescDescriptor.java AcqDescListDescriptor.java AcqDescTypeDescriptor.java AcqParamDescriptor.java AcqSettingsDescriptor.java AcqSettingsTypeDescriptor.java AcqSpecificationDescriptor.java AcqTimeDescriptor.java AcqUserParamDescriptor.java AcquisitionDescriptor.java AcquisitionListDescriptor.java AcquisitionTypeDescriptor.java AcquisitionTypeSequence.java AcquisitionTypeSequence2.java AcquisitionTypeSequence2Descriptor.java AcquisitionTypeSequenceDescriptor.java ActivationDescriptor.java ActivationTypeDescriptor.java AdminDescriptor.java AdminTypeDescriptor.java AnalyzerDescriptor.java AnalyzerTypeDescriptor.java BaseIonDescriptor.java ContactDescriptor.java CvCoreParamTypeChoiceDescriptor.java CvCoreParamTypeDescriptor.java CvUserParamTypeChoiceDescriptor.java CvUserParamTypeDescriptor.java DataArrayBinaryDescriptor.java DataArrayBinaryTypeDescriptor.java DataArrayDescriptor.java DataDescriptor.java DataProcessingDescriptor.java DescDescriptor.java DetectorDescriptor.java DetectorTypeDescriptor.java InstParamDescriptor.java InstUserParamDescriptor.java Instrument2Descriptor.java InstrumentAcqSettingsTypeDescriptor.java InstrumentCommonSettingsTypeDescriptor.java InstrumentDescriptor.java IntenArrayBinaryDescriptor.java IntenArrayDescriptor.java IonDescriptor.java IonTypeDescriptor.java ListDescriptor.java MzArrayBinaryDescriptor.java MzArrayBinaryTypeDescriptor.java MzArrayDescriptor.java MzDataDescriptor.java MzRangeDescriptor.java PersonTypeDescriptor.java PrecursorDescriptor.java PrecursorListDescriptor.java PrecursorTypeDescriptor.java ProcessingMethodDescriptor.java ProcessingMethodTypeDescriptor.java RangeDescriptor.java RawDataTypeDescriptor.java RawDescriptor.java SoftwareDescriptor.java SoftwareTypeDescriptor.java SourceDescriptor.java SourceFileDescriptor.java SourceFileTypeDescriptor.java SourceTypeDescriptor.java SummaryDescriptor.java SummaryTypeDescriptor.java SupDescDescriptor.java SupDescListDescriptor.java SupDescTypeDescriptor.java SupParamDescriptor.java SupUserParamDescriptor.java SuppDataTypeDescriptor.java SupplementDescriptor.java SupplementListDescriptor.java SupplementTypeDescriptor.java TestDescriptor.java TestParamDescriptor.java TestTypeDescriptor.java TestUserParamDescriptor.java Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:28:17
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/test/org/psi/ms/test In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/test/org/psi/ms/test Modified Files: TestDtaReader.java TestDtaSetConverter.java TestUnmarshaller.java Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:28:16
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/xml Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/xml In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/xml Added Files: mzDataXMLMapping.xml Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:24:31
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/model/types In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/java/org/psi/ms/model/types Removed Files: AcqSettingsTypeSpecTypeTypeDescriptor.java AcqSpecificationMethodTypeDescriptor.java AcqTimeUnitsTypeDescriptor.java ActivationTypeMethodTypeDescriptor.java AnalyzerTypeTypeTypeDescriptor.java DataPrecisionTypeDescriptor.java DetectorTypeTypeTypeDescriptor.java InstrumentAcqSettingsTypeAcqTypeTypeDescriptor.java InstrumentAcqSettingsTypePolarityTypeDescriptor.java SourceTypeTypeTypeDescriptor.java Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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From: Kai R. <kr...@us...> - 2003-08-20 17:18:31
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Date: Wednesday August 20, 2003 @ 9:44 Author: krunte http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter Update of /cvsroot/psidev/psi/psi-ms/xml/mzData/converter/src/java/org/psi/ms/converter In directory sc8-pr-cvs1:/tmp/cvs-serv5680/src/java/org/psi/ms/converter Modified Files: DtaReader.java DtaSetConverter.java Log Message: Changed from "compile-time descriptors" to "run-time descriptors", which room for simplification of the source code. Already we got rid of an immense amount of classes. |
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