Menu
▾
▴
proteowizard-commit — Subversion commit messages
You can subscribe to this list here.
| 2008 |
Jan
|
Feb
|
Mar
(55) |
Apr
(77) |
May
(82) |
Jun
(38) |
Jul
(76) |
Aug
(24) |
Sep
(32) |
Oct
(39) |
Nov
(55) |
Dec
(67) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2009 |
Jan
(82) |
Feb
(69) |
Mar
(48) |
Apr
(34) |
May
(86) |
Jun
(78) |
Jul
(224) |
Aug
(247) |
Sep
(566) |
Oct
(238) |
Nov
(128) |
Dec
(87) |
| 2010 |
Jan
(191) |
Feb
(235) |
Mar
(178) |
Apr
(61) |
May
(100) |
Jun
(283) |
Jul
(188) |
Aug
(131) |
Sep
(183) |
Oct
(162) |
Nov
(196) |
Dec
(156) |
| 2011 |
Jan
(161) |
Feb
(222) |
Mar
(401) |
Apr
(275) |
May
(268) |
Jun
(362) |
Jul
(217) |
Aug
(164) |
Sep
(252) |
Oct
(329) |
Nov
(118) |
Dec
(51) |
| 2012 |
Jan
(106) |
Feb
(120) |
Mar
(577) |
Apr
(279) |
May
(299) |
Jun
(409) |
Jul
(108) |
Aug
(276) |
Sep
(59) |
Oct
(194) |
Nov
(235) |
Dec
(262) |
| 2013 |
Jan
(97) |
Feb
(124) |
Mar
(229) |
Apr
(215) |
May
(231) |
Jun
(238) |
Jul
(297) |
Aug
(247) |
Sep
(205) |
Oct
(134) |
Nov
(530) |
Dec
(532) |
| 2014 |
Jan
(459) |
Feb
(342) |
Mar
(454) |
Apr
(290) |
May
(376) |
Jun
(481) |
Jul
(293) |
Aug
(150) |
Sep
(151) |
Oct
(420) |
Nov
(288) |
Dec
(437) |
| 2015 |
Jan
(275) |
Feb
(129) |
Mar
(167) |
Apr
(123) |
May
(154) |
Jun
(132) |
Jul
(229) |
Aug
(183) |
Sep
(206) |
Oct
(260) |
Nov
(101) |
Dec
(101) |
| 2016 |
Jan
(112) |
Feb
(163) |
Mar
(121) |
Apr
(177) |
May
(142) |
Jun
(110) |
Jul
(131) |
Aug
(105) |
Sep
(73) |
Oct
(132) |
Nov
(109) |
Dec
(83) |
| 2017 |
Jan
(233) |
Feb
(100) |
Mar
(169) |
Apr
(161) |
May
(148) |
Jun
(165) |
Jul
(224) |
Aug
(322) |
Sep
(215) |
Oct
(179) |
Nov
(149) |
Dec
(135) |
| 2018 |
Jan
(157) |
Feb
(100) |
Mar
(263) |
Apr
(87) |
May
(41) |
Jun
(27) |
Jul
(10) |
Aug
(142) |
Sep
(188) |
Oct
(114) |
Nov
(79) |
Dec
(70) |
| 2019 |
Jan
(54) |
Feb
(44) |
Mar
(80) |
Apr
(51) |
May
(72) |
Jun
(60) |
Jul
(64) |
Aug
(68) |
Sep
(82) |
Oct
(106) |
Nov
(49) |
Dec
(79) |
| 2020 |
Jan
(80) |
Feb
(76) |
Mar
(39) |
Apr
(27) |
May
(89) |
Jun
(55) |
Jul
(23) |
Aug
(36) |
Sep
(44) |
Oct
(81) |
Nov
(28) |
Dec
(60) |
| 2021 |
Jan
(59) |
Feb
(44) |
Mar
(55) |
Apr
(60) |
May
(61) |
Jun
(153) |
Jul
(56) |
Aug
(100) |
Sep
(121) |
Oct
(85) |
Nov
(74) |
Dec
(65) |
| 2022 |
Jan
(60) |
Feb
(22) |
Mar
(74) |
Apr
(35) |
May
(30) |
Jun
(22) |
Jul
(24) |
Aug
(27) |
Sep
(35) |
Oct
(2) |
Nov
|
Dec
|
|
From: Buildmaster <bui...@la...> - 2022-08-15 22:05:57
|
Build ProteoWizard::ProteoWizard and Skyline Docker container (Wine x86_64) #7717 (c15b08c19dbd24c435bf24b7bb28ded8d214a478) failed Exit code 1 (Step: Build container (Command Line)) (new). Agent: pwiz-linux-i-0f5372675cf38ae8d Build results: https://teamcity.labkey.org/viewLog.html?buildId=1948656&buildTypeId=ProteoWizardAndSkylineDockerContainerWineX8664 Changes included (1 change) ==================================================== Change 9f1dc0f8545a3282511d8bdf2d2162d563fef030 by bs...@pr... (2 files): Back out code inspection test changes from commit e25e9f701a7510ad07edf7914eebc2dcae30a9bb, they were causing failures in perf tests due to interaction with Sciex DLL load order brittleness see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1948656&buildTypeId=ProteoWizardAndSkylineDockerContainerWineX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-15 21:29:44
|
Build ProteoWizard::ProteoWizard and Skyline (release branch) Docker container (Wine x86_64) #254 (c15b08c19dbd24c435bf24b7bb28ded8d214a478) failed to start Error while applying patch. Agent: pwiz-linux-i-0f5372675cf38ae8d Build results: https://teamcity.labkey.org/viewLog.html?buildId=1948662&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 Changes included (1 change) ==================================================== Change cef35ee6d66d69417bbbed5af9f2b79959ba98f9 by mat...@gm... (2 files): * added branch specification for non-Skyline builds in vcs_trigger_and_paths_config.py so they don't get triggered for "build everything" builds on Skyline's release branch see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1948662&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-15 21:12:40
|
Build ProteoWizard::ProteoWizard and Skyline (release branch) Docker container (Wine x86_64) #248 (c15b08c19dbd24c435bf24b7bb28ded8d214a478) failed to start Error while applying patch. Agent: pwiz-linux-i-0f5372675cf38ae8d Build results: https://teamcity.labkey.org/viewLog.html?buildId=1948613&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 Changes included (1 change) ==================================================== Change cef35ee6d66d69417bbbed5af9f2b79959ba98f9 by mat...@gm... (2 files): * added branch specification for non-Skyline builds in vcs_trigger_and_paths_config.py so they don't get triggered for "build everything" builds on Skyline's release branch see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1948613&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-15 20:31:19
|
Build ProteoWizard::Core subset source tarball #4258 (ee7ff15bfeb8e2e6f14f71f8dc3bc7ba81b76cf8) failed Exit code 1 (Step: Command Line) (new). Agent: pwiz-linux-i-01a9225efe104da8a Build results: https://teamcity.labkey.org/viewLog.html?buildId=1948465&buildTypeId=bt81 Changes included (1 change) ==================================================== Change ee7ff15bfeb8e2e6f14f71f8dc3bc7ba81b76cf8 by mat...@gm... (7 files): - added ms level filter option to analyzer filter (so different ms levels can be filtered different ways) - added defaultDataProcessingRef for ChromatogramList_UNIFI see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1948465&buildTypeId=bt81 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 20:14:34
|
Build ProteoWizard::BiblioSpec subset source tarball #1393 (8c29d2e30b410d56d7673100373639936630d2cd) successful Success. Agent: pwiz-linux-i-0141fa67eef2cfa20 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1941535&buildTypeId=BiblioSpecSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 19:59:40
|
Build Bumbershoot::Bumbershoot subset source tarball #607 (8c29d2e30b410d56d7673100373639936630d2cd) successful Success. Agent: pwiz-linux-i-0141fa67eef2cfa20 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1941524&buildTypeId=BumbershootSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 19:59:29
|
Build ProteoWizard::BiblioSpec subset source tarball #1392 (8c29d2e30b410d56d7673100373639936630d2cd) failed Exit code 1 (Step: Command Line). Agent: pwiz-linux-i-0cb6a0f885a05e562 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1941522&buildTypeId=BiblioSpecSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 19:45:14
|
Build Bumbershoot::Bumbershoot subset source tarball #606 (8c29d2e30b410d56d7673100373639936630d2cd) failed Exit code 1 (Step: Command Line) (new). Agent: pwiz-linux-i-0141fa67eef2cfa20 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1941425&buildTypeId=BumbershootSubsetSourceTarball Changes included (6 changes) ==================================================== Change 8c29d2e30b410d56d7673100373639936630d2cd by mat...@gm... (3 files): - fixed DIA-Umpire on spectra that aren't sorted by m/z (e.g. from scanSumming timsTOF data) Change e25e9f701a7510ad07edf7914eebc2dcae30a9bb by bs...@pr... (4 files): Added a static code inspection for uses of "Form" where we really should use "FormEx"… (#2189) 1. Added a static code inspection for uses of "Form" where we really should use "FormEx". Violations return a message like this: Error: class pwiz.Skyline.EditUI.EditLinkedPeptidesDlg illegally inherits directly from Form instead of FormEx. Using FormEx ensures proper interaction with automated tests, small molecule interface operation, and other enhancements. If this really is intentional, add "typeof(EditLinkedPeptidesDlg)" to the variable "acceptableDirectUsesOfFormClass" in method "FindIllegalForms" in CodeInspectionTest.cs 2. Also, while we already warn about tests that don't inherit from AbstractUnitTest, we don't enforce it. I've made it a code inspection error now. So if, for example, pwiz.SkylineTest.ProtocolBuffers.LegacyProtocolBufferFormatsTest still did not have a base class AbstractUnitTest, you'd see this from our static code inspection test: Error: test class pwiz.SkylineTest.ProtocolBuffers.LegacyProtocolBufferFormatsTest does not inherit from AbstractUnitTest. Using AbstractUnitTest ensures proper interaction with Skyline's custom automated test system. 3. Fixed the two places in the code where we were not using FormEx. Internal issue only, not reported by any user. Change 4395512365c72f80c53c29037f7867ebb91f8531 by ni...@pr... (1 file): Fix duplicate filename extension in BlibBuild.exe error message "could not find matches for the following basename with any of the supported file extensions (.mz5, .mz5, .mzML, .mzXML, .ms2, .cms2, .bms2, .pms2)..." (#2197) Fixed incorrect repetition of the first filename extension when BiblioSpec says that it canoot find a file (not reported by anyone) Co-authored-by: Nicholas Shulman <ni...@uw...> Change 03e7fb6f7116526a706c9a1b00ce1f863e11fdbe by 523...@us... (1 file): Fixed exception in ChangeIrtPeptidesDlg (#2175) Change 06405ec8a81d1ca61313286f1b0307ae877c4385 by 523...@us... (1 file): Fixed exception on iRT standards changed (#2194) Change 0d8deb1003ff2efe4b2c6522c8957c21436baacd by bs...@pr... (1 file): Better error message when TestDocumentFormatSchemaFiles() finds that Skyline_Current.xsd has been changed but DocumentFormat.CURRENT has not When TestDocumentFormatSchemaFiles() finds that Skyline_Current.xsd has been changed but DocumentFormat.CURRENT has not, just show the schema differences, rather than dumping the full text of the two xsd files being compared. Internal issue, not reported by any user see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1941425&buildTypeId=BumbershootSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 19:45:14
|
Build ProteoWizard::BiblioSpec subset source tarball #1391 (8c29d2e30b410d56d7673100373639936630d2cd) failed Exit code 1 (Step: Command Line). Agent: pwiz-linux-i-0e8e98a8a5eba98b3 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1941423&buildTypeId=BiblioSpecSubsetSourceTarball Changes included (2 changes) ==================================================== Change 8c29d2e30b410d56d7673100373639936630d2cd by mat...@gm... (3 files): - fixed DIA-Umpire on spectra that aren't sorted by m/z (e.g. from scanSumming timsTOF data) Change e25e9f701a7510ad07edf7914eebc2dcae30a9bb by bs...@pr... (4 files): Added a static code inspection for uses of "Form" where we really should use "FormEx"… (#2189) 1. Added a static code inspection for uses of "Form" where we really should use "FormEx". Violations return a message like this: Error: class pwiz.Skyline.EditUI.EditLinkedPeptidesDlg illegally inherits directly from Form instead of FormEx. Using FormEx ensures proper interaction with automated tests, small molecule interface operation, and other enhancements. If this really is intentional, add "typeof(EditLinkedPeptidesDlg)" to the variable "acceptableDirectUsesOfFormClass" in method "FindIllegalForms" in CodeInspectionTest.cs 2. Also, while we already warn about tests that don't inherit from AbstractUnitTest, we don't enforce it. I've made it a code inspection error now. So if, for example, pwiz.SkylineTest.ProtocolBuffers.LegacyProtocolBufferFormatsTest still did not have a base class AbstractUnitTest, you'd see this from our static code inspection test: Error: test class pwiz.SkylineTest.ProtocolBuffers.LegacyProtocolBufferFormatsTest does not inherit from AbstractUnitTest. Using AbstractUnitTest ensures proper interaction with Skyline's custom automated test system. 3. Fixed the two places in the code where we were not using FormEx. Internal issue only, not reported by any user. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1941423&buildTypeId=BiblioSpecSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 10:25:03
|
Build ProteoWizard::Core Linux x86_64 debug #2329 (4395512365c72f80c53c29037f7867ebb91f8531) successful Tests passed: 245. Agent: pwiz-linux-i-062ef418451538a02 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1940323&buildTypeId=bt72 Changes included (2 changes) ==================================================== Change 4395512365c72f80c53c29037f7867ebb91f8531 by ni...@pr... (1 file): Fix duplicate filename extension in BlibBuild.exe error message "could not find matches for the following basename with any of the supported file extensions (.mz5, .mz5, .mzML, .mzXML, .ms2, .cms2, .bms2, .pms2)..." (#2197) Fixed incorrect repetition of the first filename extension when BiblioSpec says that it canoot find a file (not reported by anyone) Co-authored-by: Nicholas Shulman <ni...@uw...> Change 03e7fb6f7116526a706c9a1b00ce1f863e11fdbe by 523...@us... (1 file): Fixed exception in ChangeIrtPeptidesDlg (#2175) see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1940323&buildTypeId=bt72 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-11 00:11:36
|
Build ProteoWizard::BiblioSpec subset source tarball #1390 (4395512365c72f80c53c29037f7867ebb91f8531) failed Exit code 1 (Step: Command Line) (new). Agent: pwiz-linux-i-0ccb5e8746f64d0ad Build results: https://teamcity.labkey.org/viewLog.html?buildId=1939533&buildTypeId=BiblioSpecSubsetSourceTarball Changes included (2 changes) ==================================================== Change 4395512365c72f80c53c29037f7867ebb91f8531 by ni...@pr... (1 file): Fix duplicate filename extension in BlibBuild.exe error message "could not find matches for the following basename with any of the supported file extensions (.mz5, .mz5, .mzML, .mzXML, .ms2, .cms2, .bms2, .pms2)..." (#2197) Fixed incorrect repetition of the first filename extension when BiblioSpec says that it canoot find a file (not reported by anyone) Co-authored-by: Nicholas Shulman <ni...@uw...> Change 03e7fb6f7116526a706c9a1b00ce1f863e11fdbe by 523...@us... (1 file): Fixed exception in ChangeIrtPeptidesDlg (#2175) see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1939533&buildTypeId=BiblioSpecSubsetSourceTarball ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-10 10:12:03
|
Build ProteoWizard::Core Linux x86_64 debug #2328 (06405ec8a81d1ca61313286f1b0307ae877c4385) failed Tests passed: 69; exit code 1 (Step: Command Line) (new). Agent: pwiz-linux-i-0063c1a24f7eff84f Build results: https://teamcity.labkey.org/viewLog.html?buildId=1938179&buildTypeId=bt72 Changes included (1 change) ==================================================== Change 06405ec8a81d1ca61313286f1b0307ae877c4385 by 523...@us... (1 file): Fixed exception on iRT standards changed (#2194) see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1938179&buildTypeId=bt72 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-08 20:58:31
|
Build Bumbershoot::Bumbershoot Linux x86_64 subset #480 (c2fc70e5d64830433efb28fa41a685bff8e1e858) successful Success. Agent: pwiz-linux-i-0f183078215d3f39b Build results: https://teamcity.labkey.org/viewLog.html?buildId=1934782&buildTypeId=ProteoWizard_BumbershootLinuxX8664subset Changes included (32 changes, only 20 changes are shown) ==================================================== Change c2fc70e5d64830433efb28fa41a685bff8e1e858 by mat...@gm... (2 files): * added branch specification for non-Skyline builds in vcs_trigger_and_paths_config.py so they don't get triggered for "build everything" builds on Skyline's release branch Change f3fe83c8d58c7b619ba612e6207e1945149d2d71 by ni...@pr... (2 files): Add a couple of Bruker files to .gitignore (#2188) Also remove references to ".testsettings" files from Skyline.sln. Change 51007a51b9b9d5dcbd2e454295e15b25d91f0aab by mat...@gm... (2 files): * fixed OK button never being enabled when AssociateProteinsDlg's PeptideCount == 0 * fixed TestImportPeptideSearch not waiting for OK button to be enabled Change fe4b3d4a5186595deb0c908451cfb1d6160efa53 by mat...@gm... (1 file): Update rebase_on_demand.yml Change 72f74d6cd12168a9cd79f6879053d93c122b8c23 by ni...@pr... (1 file): Make LegacyProtocolBufferFormatsTest derive from AbstractUnitTest (#2185) Change e3dda5d3f9d4895cc900d1de29b8973a85fdd016 by ni...@pr... (1 file): Prevent blank graph when Legend is too big (#2180) * Prevent blank graph when Legend is too big Fixed behavior where graphs would appear blank if the Legend took up all of the space in the graph. Change a59d06f2b161dd941add2725251e90ca0100d4b1 by mat...@gm... (1 file): * updated cherrypick-pr-to-release.yml to point at skyline_22_2 Change 890d32c514dea37ccb26fed3c6b1d30841a6a491 by ni...@pr... (15 files): Use classes from Google.Protobuf.WellKnownTypes instead of "OptionalDouble", "OptionalFloat" (#2176) Replace the class OptionalDouble and OptionalFloat with the ones from the package Google.Protobuf.WellKnownTypes. Google Protocol Buffers are used in the .sky file when saving documents with more than 1000 transitions. This change should have no impact on the actual bytes that get written or read from disk, but does allow the C# code to use "float?" instead of "new OptionalFloat", etc. Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... Change 844739cae1d433f951e3160271da33318d60b213 by bre...@us... (1 file): Skyline: Add diagnostics to try to understand failure in nightly runs of TestExistingExperimentsTutorial (#2174) Change 29ce1a39e8b5d32a7906324a1632eccc115798f5 by ni...@pr... (1 file): Issue 855: Log scale with median normalization does not mention the n… (#2173) Issue 855: Log scale with median normalization does not mention the normalization in the y-axis label Fixed label on the Y-axis when displaying both log scale and median normalization. Change 2c693dff6f6fe69de2f1a9558e91eb3985aa9c5e by ni...@pr... (26 files): Reduce memory footprint of Document Grid so that Rich's report can be exported (#2170) Reduce memory footprint of the classes in the Document Grid by making "CachedValue" a lighter weight class. Improved memory consumption in Document Grid when large amount of Peptide Normalized Area values are being calculated (reported by Rich) Change 02a46d013ffd38778ba0e63ec5148ee8fd9a2ce9 by ni...@pr... (6 files): Undo/Redo from document grid (#2168) Undo/Redo from document grid Issue 897: Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid Issue 898: Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events Made Ctrl+Z and Ctrl+Y work in the Document Grid even when the Document Grid is a floating window. Made Ctrl+D work in the Document Grid to do "Fill Down". Fixed to restore the current row when doing Undo or Redo. Change f23e71c238807b1d273295a536df2ae01bd678c9 by bre...@us... (2 files): Skyline: Attempt to fix intermittent failure in TestAssociateProteins on BSPRATT-UW3 (#2172) - Make tests wait until btnOk is enabled before clicking it Change 50d172ff0934f9124e11feda0d0a74af2e57ea2b by ni...@pr... (1 file): Fix Japanese SerializeProteinAssociationSettingsTest. (#2171) Authored-by: Nicholas Shulman <ni...@uw...> see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1934782&buildTypeId=ProteoWizard_BumbershootLinuxX8664subset ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-08-04 14:39:58
|
Build ProteoWizard::Core Windows x86_64 (Skyline release branch) #7857 (e3a6f6528525984c9a21521c658e378838ff1fba) successful Success. Agent: pwiz-vs-2022-i-0622a18c8025e3626 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1928504&buildTypeId=ProteoWizard_CoreWindowsX8664SkylineReleaseBranch Changes included (2 changes) ==================================================== Change e3a6f6528525984c9a21521c658e378838ff1fba by mat...@gm... (0 file): Merge pull request #2186 from ProteoWizard/backport-master-080322-Skyline/skyline_22_2 Automatic cherry pick of #2183 from master to Skyline/skyline_22_2 Change b641f01eeb621958c5bb94de8c72820d35557a61 by mat...@gm... (2 files): * fixed OK button never being enabled when AssociateProteinsDlg's PeptideCount == 0 * fixed TestImportPeptideSearch not waiting for OK button to be enabled see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1928504&buildTypeId=ProteoWizard_CoreWindowsX8664SkylineReleaseBranch ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-30 09:57:07
|
Build ProteoWizard::Skyline master and PRs (Windows x86_64 debug, with code coverage) #3821 (890d32c514dea37ccb26fed3c6b1d30841a6a491) successful Tests passed: 857. Agent: pwiz-vs-2022-i-005c98c7a839f748b Build results: https://teamcity.labkey.org/viewLog.html?buildId=1922926&buildTypeId=bt210 Changes included (1 change) ==================================================== Change 890d32c514dea37ccb26fed3c6b1d30841a6a491 by ni...@pr... (15 files): Use classes from Google.Protobuf.WellKnownTypes instead of "OptionalDouble", "OptionalFloat" (#2176) Replace the class OptionalDouble and OptionalFloat with the ones from the package Google.Protobuf.WellKnownTypes. Google Protocol Buffers are used in the .sky file when saving documents with more than 1000 transitions. This change should have no impact on the actual bytes that get written or read from disk, but does allow the C# code to use "float?" instead of "new OptionalFloat", etc. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1922926&buildTypeId=bt210 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 18:15:03
|
Build ProteoWizard::Skyline Release Perf and Tutorial tests (Windows x86_64) #63 (6839020bdd10e5dc2b84232ccb7387315d599fa8) successful Tests passed: 69. Agent: pwiz-vs-2022-i-0d6f7b707f0ef9ef8 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919501&buildTypeId=ProteoWizard_SkylineReleasePerfAndTutorialTestsWindowsX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 16:49:42
|
Build ProteoWizard::Skyline Release Branch x86_64 #707 (6839020bdd10e5dc2b84232ccb7387315d599fa8) successful Tests passed: 1026. Agent: pwiz-vs-2022-i-01174aa4fae50e4d3 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919500&buildTypeId=ProteoWizard_WindowsX8664SkylineReleaseBranchMsvcProfessional ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 15:38:48
|
Build ProteoWizard::ProteoWizard and Skyline (release branch) Docker container (Wine x86_64) #226 (c15b08c19dbd24c435bf24b7bb28ded8d214a478) failed to start Snapshot dependencies failed: 2. Agent: pwiz-linux-i-02826231246341a69 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919398&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 Changes included (34 changes, only 20 changes are shown) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... Change 844739cae1d433f951e3160271da33318d60b213 by bre...@us... (1 file): Skyline: Add diagnostics to try to understand failure in nightly runs of TestExistingExperimentsTutorial (#2174) Change 29ce1a39e8b5d32a7906324a1632eccc115798f5 by ni...@pr... (1 file): Issue 855: Log scale with median normalization does not mention the n… (#2173) Issue 855: Log scale with median normalization does not mention the normalization in the y-axis label Fixed label on the Y-axis when displaying both log scale and median normalization. Change 2c693dff6f6fe69de2f1a9558e91eb3985aa9c5e by ni...@pr... (26 files): Reduce memory footprint of Document Grid so that Rich's report can be exported (#2170) Reduce memory footprint of the classes in the Document Grid by making "CachedValue" a lighter weight class. Improved memory consumption in Document Grid when large amount of Peptide Normalized Area values are being calculated (reported by Rich) Change 02a46d013ffd38778ba0e63ec5148ee8fd9a2ce9 by ni...@pr... (6 files): Undo/Redo from document grid (#2168) Undo/Redo from document grid Issue 897: Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid Issue 898: Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events Made Ctrl+Z and Ctrl+Y work in the Document Grid even when the Document Grid is a floating window. Made Ctrl+D work in the Document Grid to do "Fill Down". Fixed to restore the current row when doing Undo or Redo. Change f23e71c238807b1d273295a536df2ae01bd678c9 by bre...@us... (2 files): Skyline: Attempt to fix intermittent failure in TestAssociateProteins on BSPRATT-UW3 (#2172) - Make tests wait until btnOk is enabled before clicking it Change 50d172ff0934f9124e11feda0d0a74af2e57ea2b by ni...@pr... (1 file): Fix Japanese SerializeProteinAssociationSettingsTest. (#2171) Authored-by: Nicholas Shulman <ni...@uw...> Change 3a80bec8959cd171237c82e61a83ba15bbbcbdf5 by ni...@pr... (13 files): Issue 497: Ignore full scan settings when doing peak picking in SRM result files (#2167) * Issue 497: Ignore spectral library retention time on the SRM runs in a Skyline document regardless of the full scan settings. * Add test which makes sure, if a document contains both SRM and PRM runs, library retention time information is never used for scoring the peaks in the SRM run. Also fixed problem where ChromatogramCache could sometimes fail to find chromatograms if some replicates have a TextId and some replicates do not. * Small perf improvement to ChromatogramCache.ChromatogramIndexesMatching so that it can stop looking if it finds a matching chromatogram in every file. Change 17a5802af0d7754d82b665ec1326a22415331d17 by ni...@pr... (2 files): Issue 888: File > Import > Peptide Search with existing library reports the build settings in the Audit Log (#2169) Fixed audit log entries when choosing to use existing library during Import Peptide Search (reported by Brendan) Change cdcd859761873222afa533c395480e915cd80d9d by bre...@pr... (1 file): Skyline: Make clean.bat delete PrositConfig.xml to avoid releasing another version with broken Prosit settings Change 68fb4848c7baae04a7b8ff6f3b0b8371818bc65d by mat...@gm... (30 files): Serialize protein association settings and protein groups (#2158) * * added FastaSequenceGroup to preserve information about proteins in protein groups * * moved PeptideFilter.ParsimonySettings to PeptideSettings.ProteinAssociationSettings * added XML serialization for PeptideSettings.ProteinAssociationSettings * * added ProteinGroupMetadata to lookup and store metadata for each protein in a group individually * added ImmutableList.ReplaceElement (takes a predicate instead of an index) * * added descriptive alias DocumentFormat.PROTEIN_GROUPS for DocumentFormat.VERSION_22_13 * * removed redundant name and description from ProteinGroupMetadata ctor * fixed non-immutable behavior of ProteinMetadata.ChangeSingleProteinMetadata * * added line wrapping for all protein tooltip fields * added FastaSequenceList to FastaSequence analogous to ProteinMetadataList in ProteinMetadata (makes it easier to co-iterate FastaSequences and ProteinMetadata together) * added spaces around protein group slash separator, and changed description separator to a newline * changed protein group species to collapse down to a single value if all values are the same * added localized Unknown placeholder for protein group metadata instead of skipping null/empty metadata items * fixed ProteinMetadataManager using the wrong sequence length to lookup metadata for protein groups * * fixed incorrect protein metadata behavior for non-FastaSequences Change 67d8600818e86d16a62f25b80668f1c6d3991521 by 523...@us... (26 files): Added SCIEX 7500 method export (#2017) Change 0867718e92c78a86647eb2cf2b4074abb822cd7a by ni...@pr... (32 files): Normalization bug fixes (#2155) Fixed incorrect display of median and TIC normalized values in Peak Area graph (reported by Mike) Fixed incorrect calculation of median and TIC normalized areas and group comparisons in some replicates (reported by Brendan) Fixed problem where Protein Abundance could not be displayed in a report unless the report also included columns from Peptides. Added new document grid columns "Median Peak Area" and "Normalization Divisor" in order to make it easier to see how Skyline calculates normalized areas. Changed calculating of Median Peak Area so that it uses only internal standard label type peak areas (requested by Brendan). Change e6bb91fc6e00c7737eaf3e57127cf21bf9e63b29 by ni...@pr... (8 files): Fix TestMs1Tutorial (#2164) * Fix TestMs1Tutorial Change d8440a55f9400ed9fd643f794a4cfab89ad8cfd6 by ni...@pr... (6 files): Fix EncyclopeDIA spectrum display (#2159) Fixed bug where spectrum from incorrect file from EncyclopeDIA library would be displayed in Library Match window (reported by Deanna, thanks Nick) Also, remove many Tuple's from EncyclopeDiaLibrary.cs and replace them with named types. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1919398&buildTypeId=ProteoWizard_ProteoWizardAndSkylineReleaseBranchDockerContainerWineX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 15:36:01
|
Build ProteoWizard::Skyline Release Branch x86_64 #706 (6839020bdd10e5dc2b84232ccb7387315d599fa8) failed Exit code 1 (Step: New build step (Command Line)) (new). Agent: pwiz-vs-2022-i-01174aa4fae50e4d3 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919396&buildTypeId=ProteoWizard_WindowsX8664SkylineReleaseBranchMsvcProfessional Changes included (34 changes, only 20 changes are shown) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... Change 844739cae1d433f951e3160271da33318d60b213 by bre...@us... (1 file): Skyline: Add diagnostics to try to understand failure in nightly runs of TestExistingExperimentsTutorial (#2174) Change 29ce1a39e8b5d32a7906324a1632eccc115798f5 by ni...@pr... (1 file): Issue 855: Log scale with median normalization does not mention the n… (#2173) Issue 855: Log scale with median normalization does not mention the normalization in the y-axis label Fixed label on the Y-axis when displaying both log scale and median normalization. Change 2c693dff6f6fe69de2f1a9558e91eb3985aa9c5e by ni...@pr... (26 files): Reduce memory footprint of Document Grid so that Rich's report can be exported (#2170) Reduce memory footprint of the classes in the Document Grid by making "CachedValue" a lighter weight class. Improved memory consumption in Document Grid when large amount of Peptide Normalized Area values are being calculated (reported by Rich) Change 02a46d013ffd38778ba0e63ec5148ee8fd9a2ce9 by ni...@pr... (6 files): Undo/Redo from document grid (#2168) Undo/Redo from document grid Issue 897: Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid Issue 898: Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events Made Ctrl+Z and Ctrl+Y work in the Document Grid even when the Document Grid is a floating window. Made Ctrl+D work in the Document Grid to do "Fill Down". Fixed to restore the current row when doing Undo or Redo. Change f23e71c238807b1d273295a536df2ae01bd678c9 by bre...@us... (2 files): Skyline: Attempt to fix intermittent failure in TestAssociateProteins on BSPRATT-UW3 (#2172) - Make tests wait until btnOk is enabled before clicking it Change 50d172ff0934f9124e11feda0d0a74af2e57ea2b by ni...@pr... (1 file): Fix Japanese SerializeProteinAssociationSettingsTest. (#2171) Authored-by: Nicholas Shulman <ni...@uw...> Change 3a80bec8959cd171237c82e61a83ba15bbbcbdf5 by ni...@pr... (13 files): Issue 497: Ignore full scan settings when doing peak picking in SRM result files (#2167) * Issue 497: Ignore spectral library retention time on the SRM runs in a Skyline document regardless of the full scan settings. * Add test which makes sure, if a document contains both SRM and PRM runs, library retention time information is never used for scoring the peaks in the SRM run. Also fixed problem where ChromatogramCache could sometimes fail to find chromatograms if some replicates have a TextId and some replicates do not. * Small perf improvement to ChromatogramCache.ChromatogramIndexesMatching so that it can stop looking if it finds a matching chromatogram in every file. Change 17a5802af0d7754d82b665ec1326a22415331d17 by ni...@pr... (2 files): Issue 888: File > Import > Peptide Search with existing library reports the build settings in the Audit Log (#2169) Fixed audit log entries when choosing to use existing library during Import Peptide Search (reported by Brendan) Change cdcd859761873222afa533c395480e915cd80d9d by bre...@pr... (1 file): Skyline: Make clean.bat delete PrositConfig.xml to avoid releasing another version with broken Prosit settings Change 68fb4848c7baae04a7b8ff6f3b0b8371818bc65d by mat...@gm... (30 files): Serialize protein association settings and protein groups (#2158) * * added FastaSequenceGroup to preserve information about proteins in protein groups * * moved PeptideFilter.ParsimonySettings to PeptideSettings.ProteinAssociationSettings * added XML serialization for PeptideSettings.ProteinAssociationSettings * * added ProteinGroupMetadata to lookup and store metadata for each protein in a group individually * added ImmutableList.ReplaceElement (takes a predicate instead of an index) * * added descriptive alias DocumentFormat.PROTEIN_GROUPS for DocumentFormat.VERSION_22_13 * * removed redundant name and description from ProteinGroupMetadata ctor * fixed non-immutable behavior of ProteinMetadata.ChangeSingleProteinMetadata * * added line wrapping for all protein tooltip fields * added FastaSequenceList to FastaSequence analogous to ProteinMetadataList in ProteinMetadata (makes it easier to co-iterate FastaSequences and ProteinMetadata together) * added spaces around protein group slash separator, and changed description separator to a newline * changed protein group species to collapse down to a single value if all values are the same * added localized Unknown placeholder for protein group metadata instead of skipping null/empty metadata items * fixed ProteinMetadataManager using the wrong sequence length to lookup metadata for protein groups * * fixed incorrect protein metadata behavior for non-FastaSequences Change 67d8600818e86d16a62f25b80668f1c6d3991521 by 523...@us... (26 files): Added SCIEX 7500 method export (#2017) Change 0867718e92c78a86647eb2cf2b4074abb822cd7a by ni...@pr... (32 files): Normalization bug fixes (#2155) Fixed incorrect display of median and TIC normalized values in Peak Area graph (reported by Mike) Fixed incorrect calculation of median and TIC normalized areas and group comparisons in some replicates (reported by Brendan) Fixed problem where Protein Abundance could not be displayed in a report unless the report also included columns from Peptides. Added new document grid columns "Median Peak Area" and "Normalization Divisor" in order to make it easier to see how Skyline calculates normalized areas. Changed calculating of Median Peak Area so that it uses only internal standard label type peak areas (requested by Brendan). Change e6bb91fc6e00c7737eaf3e57127cf21bf9e63b29 by ni...@pr... (8 files): Fix TestMs1Tutorial (#2164) * Fix TestMs1Tutorial Change d8440a55f9400ed9fd643f794a4cfab89ad8cfd6 by ni...@pr... (6 files): Fix EncyclopeDIA spectrum display (#2159) Fixed bug where spectrum from incorrect file from EncyclopeDIA library would be displayed in Library Match window (reported by Deanna, thanks Nick) Also, remove many Tuple's from EncyclopeDiaLibrary.cs and replace them with named types. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1919396&buildTypeId=ProteoWizard_WindowsX8664SkylineReleaseBranchMsvcProfessional ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 15:22:41
|
Build ProteoWizard::Skyline Release Perf and Tutorial tests (Windows x86_64) #62 (6839020bdd10e5dc2b84232ccb7387315d599fa8) failed Exit code 1 (Step: Command Line) (new). Agent: pwiz-vs-2022-i-0fb587034d2bd3706 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919399&buildTypeId=ProteoWizard_SkylineReleasePerfAndTutorialTestsWindowsX8664 Changes included (323 changes, only 20 changes are shown) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... Change 844739cae1d433f951e3160271da33318d60b213 by bre...@us... (1 file): Skyline: Add diagnostics to try to understand failure in nightly runs of TestExistingExperimentsTutorial (#2174) Change 29ce1a39e8b5d32a7906324a1632eccc115798f5 by ni...@pr... (1 file): Issue 855: Log scale with median normalization does not mention the n… (#2173) Issue 855: Log scale with median normalization does not mention the normalization in the y-axis label Fixed label on the Y-axis when displaying both log scale and median normalization. Change 2c693dff6f6fe69de2f1a9558e91eb3985aa9c5e by ni...@pr... (26 files): Reduce memory footprint of Document Grid so that Rich's report can be exported (#2170) Reduce memory footprint of the classes in the Document Grid by making "CachedValue" a lighter weight class. Improved memory consumption in Document Grid when large amount of Peptide Normalized Area values are being calculated (reported by Rich) Change 02a46d013ffd38778ba0e63ec5148ee8fd9a2ce9 by ni...@pr... (6 files): Undo/Redo from document grid (#2168) Undo/Redo from document grid Issue 897: Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid Issue 898: Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events Made Ctrl+Z and Ctrl+Y work in the Document Grid even when the Document Grid is a floating window. Made Ctrl+D work in the Document Grid to do "Fill Down". Fixed to restore the current row when doing Undo or Redo. Change f23e71c238807b1d273295a536df2ae01bd678c9 by bre...@us... (2 files): Skyline: Attempt to fix intermittent failure in TestAssociateProteins on BSPRATT-UW3 (#2172) - Make tests wait until btnOk is enabled before clicking it Change 50d172ff0934f9124e11feda0d0a74af2e57ea2b by ni...@pr... (1 file): Fix Japanese SerializeProteinAssociationSettingsTest. (#2171) Authored-by: Nicholas Shulman <ni...@uw...> Change 3a80bec8959cd171237c82e61a83ba15bbbcbdf5 by ni...@pr... (13 files): Issue 497: Ignore full scan settings when doing peak picking in SRM result files (#2167) * Issue 497: Ignore spectral library retention time on the SRM runs in a Skyline document regardless of the full scan settings. * Add test which makes sure, if a document contains both SRM and PRM runs, library retention time information is never used for scoring the peaks in the SRM run. Also fixed problem where ChromatogramCache could sometimes fail to find chromatograms if some replicates have a TextId and some replicates do not. * Small perf improvement to ChromatogramCache.ChromatogramIndexesMatching so that it can stop looking if it finds a matching chromatogram in every file. Change 17a5802af0d7754d82b665ec1326a22415331d17 by ni...@pr... (2 files): Issue 888: File > Import > Peptide Search with existing library reports the build settings in the Audit Log (#2169) Fixed audit log entries when choosing to use existing library during Import Peptide Search (reported by Brendan) Change cdcd859761873222afa533c395480e915cd80d9d by bre...@pr... (1 file): Skyline: Make clean.bat delete PrositConfig.xml to avoid releasing another version with broken Prosit settings Change 68fb4848c7baae04a7b8ff6f3b0b8371818bc65d by mat...@gm... (30 files): Serialize protein association settings and protein groups (#2158) * * added FastaSequenceGroup to preserve information about proteins in protein groups * * moved PeptideFilter.ParsimonySettings to PeptideSettings.ProteinAssociationSettings * added XML serialization for PeptideSettings.ProteinAssociationSettings * * added ProteinGroupMetadata to lookup and store metadata for each protein in a group individually * added ImmutableList.ReplaceElement (takes a predicate instead of an index) * * added descriptive alias DocumentFormat.PROTEIN_GROUPS for DocumentFormat.VERSION_22_13 * * removed redundant name and description from ProteinGroupMetadata ctor * fixed non-immutable behavior of ProteinMetadata.ChangeSingleProteinMetadata * * added line wrapping for all protein tooltip fields * added FastaSequenceList to FastaSequence analogous to ProteinMetadataList in ProteinMetadata (makes it easier to co-iterate FastaSequences and ProteinMetadata together) * added spaces around protein group slash separator, and changed description separator to a newline * changed protein group species to collapse down to a single value if all values are the same * added localized Unknown placeholder for protein group metadata instead of skipping null/empty metadata items * fixed ProteinMetadataManager using the wrong sequence length to lookup metadata for protein groups * * fixed incorrect protein metadata behavior for non-FastaSequences Change 67d8600818e86d16a62f25b80668f1c6d3991521 by 523...@us... (26 files): Added SCIEX 7500 method export (#2017) Change 0867718e92c78a86647eb2cf2b4074abb822cd7a by ni...@pr... (32 files): Normalization bug fixes (#2155) Fixed incorrect display of median and TIC normalized values in Peak Area graph (reported by Mike) Fixed incorrect calculation of median and TIC normalized areas and group comparisons in some replicates (reported by Brendan) Fixed problem where Protein Abundance could not be displayed in a report unless the report also included columns from Peptides. Added new document grid columns "Median Peak Area" and "Normalization Divisor" in order to make it easier to see how Skyline calculates normalized areas. Changed calculating of Median Peak Area so that it uses only internal standard label type peak areas (requested by Brendan). Change e6bb91fc6e00c7737eaf3e57127cf21bf9e63b29 by ni...@pr... (8 files): Fix TestMs1Tutorial (#2164) * Fix TestMs1Tutorial Change d8440a55f9400ed9fd643f794a4cfab89ad8cfd6 by ni...@pr... (6 files): Fix EncyclopeDIA spectrum display (#2159) Fixed bug where spectrum from incorrect file from EncyclopeDIA library would be displayed in Library Match window (reported by Deanna, thanks Nick) Also, remove many Tuple's from EncyclopeDiaLibrary.cs and replace them with named types. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1919399&buildTypeId=ProteoWizard_SkylineReleasePerfAndTutorialTestsWindowsX8664 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-29 15:21:11
|
Build ProteoWizard::Core Windows x86_64 (Skyline release branch) #7854 (6839020bdd10e5dc2b84232ccb7387315d599fa8) failed Exit code 1 (Step: Command Line) (new). Agent: pwiz-vs-2022-i-0d8b4ecfaa259eb01 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1919397&buildTypeId=ProteoWizard_CoreWindowsX8664SkylineReleaseBranch Changes included (34 changes, only 20 changes are shown) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... Change 844739cae1d433f951e3160271da33318d60b213 by bre...@us... (1 file): Skyline: Add diagnostics to try to understand failure in nightly runs of TestExistingExperimentsTutorial (#2174) Change 29ce1a39e8b5d32a7906324a1632eccc115798f5 by ni...@pr... (1 file): Issue 855: Log scale with median normalization does not mention the n… (#2173) Issue 855: Log scale with median normalization does not mention the normalization in the y-axis label Fixed label on the Y-axis when displaying both log scale and median normalization. Change 2c693dff6f6fe69de2f1a9558e91eb3985aa9c5e by ni...@pr... (26 files): Reduce memory footprint of Document Grid so that Rich's report can be exported (#2170) Reduce memory footprint of the classes in the Document Grid by making "CachedValue" a lighter weight class. Improved memory consumption in Document Grid when large amount of Peptide Normalized Area values are being calculated (reported by Rich) Change 02a46d013ffd38778ba0e63ec5148ee8fd9a2ce9 by ni...@pr... (6 files): Undo/Redo from document grid (#2168) Undo/Redo from document grid Issue 897: Make Ctrl-Z (Undo) and Ctrl-Y (Redo) work in Document Grid Issue 898: Record the Document Grid selection in the Undo/Redo buffer during Document Grid editing events Made Ctrl+Z and Ctrl+Y work in the Document Grid even when the Document Grid is a floating window. Made Ctrl+D work in the Document Grid to do "Fill Down". Fixed to restore the current row when doing Undo or Redo. Change f23e71c238807b1d273295a536df2ae01bd678c9 by bre...@us... (2 files): Skyline: Attempt to fix intermittent failure in TestAssociateProteins on BSPRATT-UW3 (#2172) - Make tests wait until btnOk is enabled before clicking it Change 50d172ff0934f9124e11feda0d0a74af2e57ea2b by ni...@pr... (1 file): Fix Japanese SerializeProteinAssociationSettingsTest. (#2171) Authored-by: Nicholas Shulman <ni...@uw...> Change 3a80bec8959cd171237c82e61a83ba15bbbcbdf5 by ni...@pr... (13 files): Issue 497: Ignore full scan settings when doing peak picking in SRM result files (#2167) * Issue 497: Ignore spectral library retention time on the SRM runs in a Skyline document regardless of the full scan settings. * Add test which makes sure, if a document contains both SRM and PRM runs, library retention time information is never used for scoring the peaks in the SRM run. Also fixed problem where ChromatogramCache could sometimes fail to find chromatograms if some replicates have a TextId and some replicates do not. * Small perf improvement to ChromatogramCache.ChromatogramIndexesMatching so that it can stop looking if it finds a matching chromatogram in every file. Change 17a5802af0d7754d82b665ec1326a22415331d17 by ni...@pr... (2 files): Issue 888: File > Import > Peptide Search with existing library reports the build settings in the Audit Log (#2169) Fixed audit log entries when choosing to use existing library during Import Peptide Search (reported by Brendan) Change cdcd859761873222afa533c395480e915cd80d9d by bre...@pr... (1 file): Skyline: Make clean.bat delete PrositConfig.xml to avoid releasing another version with broken Prosit settings Change 68fb4848c7baae04a7b8ff6f3b0b8371818bc65d by mat...@gm... (30 files): Serialize protein association settings and protein groups (#2158) * * added FastaSequenceGroup to preserve information about proteins in protein groups * * moved PeptideFilter.ParsimonySettings to PeptideSettings.ProteinAssociationSettings * added XML serialization for PeptideSettings.ProteinAssociationSettings * * added ProteinGroupMetadata to lookup and store metadata for each protein in a group individually * added ImmutableList.ReplaceElement (takes a predicate instead of an index) * * added descriptive alias DocumentFormat.PROTEIN_GROUPS for DocumentFormat.VERSION_22_13 * * removed redundant name and description from ProteinGroupMetadata ctor * fixed non-immutable behavior of ProteinMetadata.ChangeSingleProteinMetadata * * added line wrapping for all protein tooltip fields * added FastaSequenceList to FastaSequence analogous to ProteinMetadataList in ProteinMetadata (makes it easier to co-iterate FastaSequences and ProteinMetadata together) * added spaces around protein group slash separator, and changed description separator to a newline * changed protein group species to collapse down to a single value if all values are the same * added localized Unknown placeholder for protein group metadata instead of skipping null/empty metadata items * fixed ProteinMetadataManager using the wrong sequence length to lookup metadata for protein groups * * fixed incorrect protein metadata behavior for non-FastaSequences Change 67d8600818e86d16a62f25b80668f1c6d3991521 by 523...@us... (26 files): Added SCIEX 7500 method export (#2017) Change 0867718e92c78a86647eb2cf2b4074abb822cd7a by ni...@pr... (32 files): Normalization bug fixes (#2155) Fixed incorrect display of median and TIC normalized values in Peak Area graph (reported by Mike) Fixed incorrect calculation of median and TIC normalized areas and group comparisons in some replicates (reported by Brendan) Fixed problem where Protein Abundance could not be displayed in a report unless the report also included columns from Peptides. Added new document grid columns "Median Peak Area" and "Normalization Divisor" in order to make it easier to see how Skyline calculates normalized areas. Changed calculating of Median Peak Area so that it uses only internal standard label type peak areas (requested by Brendan). Change e6bb91fc6e00c7737eaf3e57127cf21bf9e63b29 by ni...@pr... (8 files): Fix TestMs1Tutorial (#2164) * Fix TestMs1Tutorial Change d8440a55f9400ed9fd643f794a4cfab89ad8cfd6 by ni...@pr... (6 files): Fix EncyclopeDIA spectrum display (#2159) Fixed bug where spectrum from incorrect file from EncyclopeDIA library would be displayed in Library Match window (reported by Deanna, thanks Nick) Also, remove many Tuple's from EncyclopeDiaLibrary.cs and replace them with named types. see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1919397&buildTypeId=ProteoWizard_CoreWindowsX8664SkylineReleaseBranch ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-28 09:41:37
|
Build ProteoWizard::Skyline master and PRs (Windows x86_64 debug, with code coverage) #3819 (6839020bdd10e5dc2b84232ccb7387315d599fa8) failed Tests passed: 856; percentage of method coverage 69.685 is 0.066 less than 69.751 in build #3803 (844739cae1d433f951e3160271da33318d60b213). Agent: pwiz-vs-2022-i-0440e6a2186d261f9 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1917612&buildTypeId=bt210 Changes included (1 change) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1917612&buildTypeId=bt210 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-27 17:57:48
|
Build ProteoWizard::Skyline Code Inspection #9873 (6839020bdd10e5dc2b84232ccb7387315d599fa8) successful Inspections total: 2, errors: 2. Agent: pwiz-vs-2022-i-08a6a38692c203fa2 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1916379&buildTypeId=ProteoWizard_WindowsX8664msvcProfessionalSkylineResharperChecks Changes included (1 change) ==================================================== Change 6839020bdd10e5dc2b84232ccb7387315d599fa8 by bs...@pr... (1 file): Improved version of ValueCache which should use less memory. .Net now implements HashSet.TryGetValue (T equalValue, out T actualValue) so our value cache implementation no longer needs to use a dictionary to retrieve the original object. This should have a mild but positive effect on performance and memory usage. Internal issue only, no user report see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1916379&buildTypeId=ProteoWizard_WindowsX8664msvcProfessionalSkylineResharperChecks ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-27 11:39:16
|
Build ProteoWizard::Skyline master and PRs (Windows x86_64 debug, with code coverage) #3812 (d1da6e909427def914839fe5eb3a9a32600f57a3) failed Tests passed: 856; percentage of method coverage 69.681 is 0.07 less than 69.751 in build #3803 (844739cae1d433f951e3160271da33318d60b213) (new). Agent: pwiz-vs-2022-i-0613bd460b0065cfc Build results: https://teamcity.labkey.org/viewLog.html?buildId=1915964&buildTypeId=bt210 Changes included (5 changes) ==================================================== Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 Change f535e19ce04e408a6affd44eaa500c26ceae12d9 by bre...@pr... (1 file): Skyline: Update copyright to 2022 Change d375c18330006ecabd85503b88a84894ff7822db by bre...@us... (16 files): Skyline: Update version number for 22.2 branch (#2177) - Remove Skyline-daily from RESX files before sending to localization - Add Skyline_22.13.xsd to TestUtil.csproj Change f456b465b476894fe17c265c3073b584c88563c8 by mat...@gm... (9 files): Switch from hybrid runsettings/testsettings to pure runsettings (#2134) * turned off deployment, legacy mode, and testsettings inclusion in runsettings; ReSharper runs much better in VS 2022 without it * commented out TargetFrameworkVersion; it should be auto-detected when omitted * fixed test directory (TestContext.TestDir points at the binaries directory when deployment is disabled) * removed app.config for TestData to fix TeamCity code coverage error * fixed GetTestPath() running under TestRunner * removed testsettings files and moved template instantiation to the Installer/Jamfile.jam Change 48b46ff9c873e80cacc7d0fea26f30f71875e918 by mat...@gm... (23 files): Parallel mode in TestRunner for distributing tests between clients (#2033) * added parallelmode (off/server/client) in TestRunner for distributing tests between clients * added workercount parameter which tells TestRunner to start that many docker workers (so now parallel execution can be achieved with a single TestRunner command with parallelmode=server) * added waitforworkers parameter which tells TestRunner to wait for each Docker worker to connect before trying to start another worker * added keepworkerlogs option to write worker logs to shared directory * added NetMQ dependency from NuGet * added nuget restore calls before building Skyline * fixed TestStandardType not to launch the documentation browser when running under AlwaysUp (NB: I had to use a heuristic which would also trigger if running straight from an administrator command prompt) * changed ExportMethod() to pass transitions as files instead of standard input because using standard input when running under AlwaysUp seems broken * fixed CommandLineArgs.CommandLine to include the =value parts of its key=value pairs * moved construction of FindLanguages instances in TestRunner to class scope to minimize some network errors I was getting with Docker * added testing thread for parallelmode=server for tests that use a lot of memory or do other non-parallel-safe things * added NoParallelTestingAttribute to indicate that tests should not run in parallel (i.e. that will now use the server's testing thread) * added condition in Skyline Jamfile to run TestFunctional tests with parallelmode=server if Docker command is found (currently commented out because it's not working reliably on TeamCity) * added MemoryInfo.AvailableBytes * added semaphore for test_msi (TestData) so it doesn't run at the same time as other Skyline tests * set TestRunToRunRegression as NoParallelTesting due to frequent error like "Expected a difference no greater than <1E-05> between expected value <0.999998880406438> and... see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1915964&buildTypeId=bt210 ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
|
From: Buildmaster <bui...@la...> - 2022-07-27 02:03:00
|
Build ProteoWizard::Skyline Code Inspection #9871 (d1da6e909427def914839fe5eb3a9a32600f57a3) failed Execution timeout (new); inspections (ReSharper) execution failure. (new). Agent: pwiz-vs-2022-i-0a7eddc14e8a14b51 Build results: https://teamcity.labkey.org/viewLog.html?buildId=1914874&buildTypeId=ProteoWizard_WindowsX8664msvcProfessionalSkylineResharperChecks Changes included (1 change) ==================================================== Change d1da6e909427def914839fe5eb3a9a32600f57a3 by bre...@pr... (1 file): Skyline: Update version placeholder text to 22.0.0.0 see more information about changed files: https://teamcity.labkey.org/viewLog.html?tab=buildChangesDiv&buildId=1914874&buildTypeId=ProteoWizard_WindowsX8664msvcProfessionalSkylineResharperChecks ============================================================================ Configure email notifications: https://teamcity.labkey.org/profile.html?init=1&tab=userNotifications |
11 messages has been excluded from this view by a project administrator.
