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From: <al...@us...> - 2008-03-06 07:34:15
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Revision: 385
http://obi.svn.sourceforge.net/obi/?rev=385&view=rev
Author: alanr
Date: 2008-03-05 23:34:17 -0800 (Wed, 05 Mar 2008)
Log Message:
-----------
obi-owl-full adds range restriction to curation_status
AnnotationProperty removes EnumerationClass, and makes curation status
a subclass of information_content_entity
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/obi-owl-full.owl
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From: <mco...@us...> - 2008-03-05 17:34:44
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Revision: 384
http://obi.svn.sourceforge.net/obi/?rev=384&view=rev
Author: mcourtot
Date: 2008-03-05 09:34:19 -0800 (Wed, 05 Mar 2008)
Log Message:
-----------
Removal of xmlns to avoid confusion. The xmlns is local to a file, and non of the properties used in that file need a default for the tag - they all use explicit prefixes.
Modified Paths:
--------------
branchDevelopment/trunk/obi.owl.template
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From: <al...@us...> - 2008-03-05 07:27:32
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Revision: 383
http://obi.svn.sourceforge.net/obi/?rev=383&view=rev
Author: alanr
Date: 2008-03-04 23:27:37 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
rewrite the namespaces too while you're at it
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <al...@us...> - 2008-03-05 07:27:07
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Revision: 382
http://obi.svn.sourceforge.net/obi/?rev=382&view=rev
Author: alanr
Date: 2008-03-04 23:27:12 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
fix robfo namespace
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/normalize-namespaces.pl
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From: <al...@us...> - 2008-03-05 05:21:05
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Revision: 381
http://obi.svn.sourceforge.net/obi/?rev=381&view=rev
Author: alanr
Date: 2008-03-04 21:20:37 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
Move labware from Instrument.owl to Obsolete.owl
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/Obsolete.owl
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From: <al...@us...> - 2008-03-05 04:56:59
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Revision: 380
http://obi.svn.sourceforge.net/obi/?rev=380&view=rev
Author: alanr
Date: 2008-03-04 20:57:03 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
Biomateral: Use CL_0000000 (Cell from CL) instead of OBI_100009 cell entity (import_from_Cell_Ontology)
Fix bug in bug fix in modify-uris.pl
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <al...@us...> - 2008-03-05 04:36:56
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Revision: 379
http://obi.svn.sourceforge.net/obi/?rev=379&view=rev
Author: alanr
Date: 2008-03-04 20:36:57 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
Add labels for some classes
Chosen policy for uris
Move classes tagged obsolete in Role.owl to Obsolete.owl
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <mco...@us...> - 2008-03-04 22:21:04
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Revision: 378
http://obi.svn.sourceforge.net/obi/?rev=378&view=rev
Author: mcourtot
Date: 2008-03-04 14:20:47 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
updated cell label
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
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From: <mco...@us...> - 2008-03-04 22:18:42
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Revision: 377
http://obi.svn.sourceforge.net/obi/?rev=377&view=rev
Author: mcourtot
Date: 2008-03-04 14:18:22 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
updated label of cell
Modified Paths:
--------------
branchDevelopment/trunk/externalDerived.owl
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From: <al...@us...> - 2008-03-04 19:57:05
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Revision: 376
http://obi.svn.sourceforge.net/obi/?rev=376&view=rev
Author: alanr
Date: 2008-03-04 11:57:06 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
Add labels for properties
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
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From: <fgi...@us...> - 2008-03-04 16:46:43
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Revision: 375
http://obi.svn.sourceforge.net/obi/?rev=375&view=rev
Author: fgibson_sf
Date: 2008-03-04 08:46:42 -0800 (Tue, 04 Mar 2008)
Log Message:
-----------
added the necessary condition for a cytometer and the necessary and sufficient conditions for a flow cytometer
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <al...@us...> - 2008-03-04 06:53:54
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Revision: 374
http://obi.svn.sourceforge.net/obi/?rev=374&view=rev
Author: alanr
Date: 2008-03-03 22:53:27 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
add rdfs:label to relations in preparation for giving them ids
Modified Paths:
--------------
branchDevelopment/trunk/Relations.owl
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From: <mco...@us...> - 2008-03-03 18:54:42
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Revision: 373
http://obi.svn.sourceforge.net/obi/?rev=373&view=rev
Author: mcourtot
Date: 2008-03-03 10:54:46 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
client class calling hte OBITools.jar.
this is the class the shell script calls to perform the merge
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/OBIReleaseClient.java
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From: <mco...@us...> - 2008-03-03 18:52:37
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Revision: 372
http://obi.svn.sourceforge.net/obi/?rev=372&view=rev
Author: mcourtot
Date: 2008-03-03 10:52:40 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
added shell script to merge the OBI files, check consistency and validate if ok to commit
creates the merged files, checks them, and copy them appropriately
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/OBIreleaseCheck.sh
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From: <mco...@us...> - 2008-03-03 18:49:02
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Revision: 371
http://obi.svn.sourceforge.net/obi/?rev=371&view=rev
Author: mcourtot
Date: 2008-03-03 10:49:08 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
removed cached file
Removed Paths:
-------------
branchDevelopment/trunk/sourcecodes/OBITools/.project
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From: <mco...@us...> - 2008-03-03 18:48:32
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Revision: 370
http://obi.svn.sourceforge.net/obi/?rev=370&view=rev
Author: mcourtot
Date: 2008-03-03 10:48:34 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
removed cached file
Removed Paths:
-------------
branchDevelopment/trunk/sourcecodes/OBITools/.classpath
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From: <mco...@us...> - 2008-03-03 16:02:40
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Revision: 369
http://obi.svn.sourceforge.net/obi/?rev=369&view=rev
Author: mcourtot
Date: 2008-03-03 08:02:29 -0800 (Mon, 03 Mar 2008)
Log Message:
-----------
added java source directory for OBITools
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/OBITools/
branchDevelopment/trunk/sourcecodes/OBITools/.classpath
branchDevelopment/trunk/sourcecodes/OBITools/.project
branchDevelopment/trunk/sourcecodes/OBITools/buildJar.xml
branchDevelopment/trunk/sourcecodes/OBITools/lib/
branchDevelopment/trunk/sourcecodes/OBITools/src/
branchDevelopment/trunk/sourcecodes/OBITools/src/ca/
branchDevelopment/trunk/sourcecodes/OBITools/src/ca/bccrc/
branchDevelopment/trunk/sourcecodes/OBITools/src/ca/bccrc/obi/
branchDevelopment/trunk/sourcecodes/OBITools/src/ca/bccrc/obi/OBIMerger.java
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From: <al...@us...> - 2008-03-03 07:43:04
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Revision: 368
http://obi.svn.sourceforge.net/obi/?rev=368&view=rev
Author: alanr
Date: 2008-03-02 23:42:29 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
allocate new ids when > 7 digits currently.
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <al...@us...> - 2008-03-03 05:28:20
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Revision: 367
http://obi.svn.sourceforge.net/obi/?rev=367&view=rev
Author: alanr
Date: 2008-03-02 21:28:21 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
Tool to rewrite URIs as PURLS (normalizing them in the process)
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <al...@us...> - 2008-03-03 05:02:38
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Revision: 366
http://obi.svn.sourceforge.net/obi/?rev=366&view=rev
Author: alanr
Date: 2008-03-02 21:02:36 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
get rid of unnecessary obi: prefixes in preparation for uri rewriting
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
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From: <al...@us...> - 2008-03-03 04:59:29
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Revision: 365
http://obi.svn.sourceforge.net/obi/?rev=365&view=rev
Author: alanr
Date: 2008-03-02 20:59:27 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
oops - now the correct xml comment syntax
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
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From: <al...@us...> - 2008-03-03 04:29:44
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Revision: 364
http://obi.svn.sourceforge.net/obi/?rev=364&view=rev
Author: alanr
Date: 2008-03-02 20:29:47 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
remove AnnotationPropertyDomain/Range from CurationStatus (belongs on the curation_status property, not the class ;-)
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
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From: <al...@us...> - 2008-03-03 02:55:17
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Revision: 363
http://obi.svn.sourceforge.net/obi/?rev=363&view=rev
Author: alanr
Date: 2008-03-02 18:55:20 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
oops rdf:ID="OBI_1000024" should be rdf:about="http://obi.sourceforge.net/ontology/OBI.owl#OBI_1000024"
- accidentally slipped into wrong namespace because of this.
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
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From: <al...@us...> - 2008-03-02 08:35:43
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Revision: 362
http://obi.svn.sourceforge.net/obi/?rev=362&view=rev
Author: alanr
Date: 2008-03-02 00:35:46 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
script to write out all the uris used, along with type - class, property, individuals, as renaming depends on which is which.
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/uri-report.lisp
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From: <al...@us...> - 2008-03-02 08:34:15
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Revision: 361
http://obi.svn.sourceforge.net/obi/?rev=361&view=rev
Author: alanr
Date: 2008-03-02 00:34:13 -0800 (Sun, 02 Mar 2008)
Log Message:
-----------
Move this (still experimental) in to sourcecodes
Added Paths:
-----------
branchDevelopment/trunk/sourcecodes/gather-class-uris.pl
Removed Paths:
-------------
branchDevelopment/trunk/gather-class-uris.pl
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