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From: <jen...@us...> - 2008-02-22 18:59:01
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Revision: 335
http://obi.svn.sourceforge.net/obi/?rev=335&view=rev
Author: jenfostel
Date: 2008-02-22 10:59:01 -0800 (Fri, 22 Feb 2008)
Log Message:
-----------
moved to under discussion: protocol_application, metabolite, funder; finished cleaning non-independent continuant role bearers
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <dan...@us...> - 2008-02-21 11:19:29
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Revision: 334
http://obi.svn.sourceforge.net/obi/?rev=334&view=rev
Author: daniel_schober
Date: 2008-02-21 02:53:11 -0800 (Thu, 21 Feb 2008)
Log Message:
-----------
updated device and instrument defs
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-21 10:27:04
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Revision: 333
http://obi.svn.sourceforge.net/obi/?rev=333&view=rev
Author: daniel_schober
Date: 2008-02-21 02:25:59 -0800 (Thu, 21 Feb 2008)
Log Message:
-----------
Modified Paths:
--------------
branchDevelopment/trunk/lastac_autoID/default.properties.InstrumentAndPart
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From: <mco...@us...> - 2008-02-20 21:42:08
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Revision: 332
http://obi.svn.sourceforge.net/obi/?rev=332&view=rev
Author: mcourtot
Date: 2008-02-20 13:42:10 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
notes from developer call on 20 of Feb 2008
Added Paths:
-----------
web/trunk/htdocs/notes/developers/2008/20080220.txt
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From: <dan...@us...> - 2008-02-20 12:08:09
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Revision: 331
http://obi.svn.sourceforge.net/obi/?rev=331&view=rev
Author: daniel_schober
Date: 2008-02-20 04:08:14 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
Added '_software': This is a placeholder, as was demanded by the instrument branch. I remember we had it before, I guess it was deleted...
I have made 2 classes defined classes/XPS with the following nessecary & sufficient restrictions as discussed in yesterdays notes. However I expect these to be refined in the future, bt made them sufficient because I think we want these to be reasoned over.
device:
material+
has_function some (instrument_function or instrument part function)
is_manufactured_by some (organization or person)
plattform:
device+
(ro:has_part some instrument) and (_software or device)
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <fgi...@us...> - 2008-02-20 10:41:44
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Revision: 330
http://obi.svn.sourceforge.net/obi/?rev=330&view=rev
Author: fgibson_sf
Date: 2008-02-20 02:41:42 -0800 (Wed, 20 Feb 2008)
Log Message:
-----------
Added relations to device:
is_manufactured_by some (organisation or person)
has_function some obi_function
Added relations to platform:
has_part some instrument
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <jen...@us...> - 2008-02-19 19:38:36
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Revision: 329
http://obi.svn.sourceforge.net/obi/?rev=329&view=rev
Author: jenfostel
Date: 2008-02-19 11:38:33 -0800 (Tue, 19 Feb 2008)
Log Message:
-----------
testing jf
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <dan...@us...> - 2008-02-19 17:46:56
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Revision: 328
http://obi.svn.sourceforge.net/obi/?rev=328&view=rev
Author: daniel_schober
Date: 2008-02-19 09:46:27 -0800 (Tue, 19 Feb 2008)
Log Message:
-----------
* interrogation_point--> moved to three dimensional region
* jet_in_air_flow_chamber move to 3 dim region--> moved to three dimensional region
* Moved plattform under device.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <dan...@us...> - 2008-02-19 13:40:24
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Revision: 327
http://obi.svn.sourceforge.net/obi/?rev=327&view=rev
Author: daniel_schober
Date: 2008-02-19 05:40:23 -0800 (Tue, 19 Feb 2008)
Log Message:
-----------
obsoleted 'labware'(which we couldn't come up with a traceable nat lang definition) and moved its former children up, under 'device'
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <al...@us...> - 2008-02-15 19:00:27
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Revision: 326
http://obi.svn.sourceforge.net/obi/?rev=326&view=rev
Author: alanr
Date: 2008-02-15 11:00:31 -0800 (Fri, 15 Feb 2008)
Log Message:
-----------
Replaced sparql generated RDF element with our standard one. This will
have to be done as postprocess if we used sparql to define this file
Added externalDerived to template, obi.owl
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
branchDevelopment/trunk/obi.owl.template
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From: <al...@us...> - 2008-02-15 18:49:42
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Revision: 325
http://obi.svn.sourceforge.net/obi/?rev=325&view=rev
Author: alanr
Date: 2008-02-15 10:49:47 -0800 (Fri, 15 Feb 2008)
Log Message:
-----------
Some refinements of external.
Removed extra class definition of material (harmless)
Moved importedFrom to AnnotationProperties.owl
Added rdfs:label to externalDerived.owl
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
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From: <al...@us...> - 2008-02-15 17:19:23
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Revision: 324
http://obi.svn.sourceforge.net/obi/?rev=324&view=rev
Author: alanr
Date: 2008-02-15 08:23:54 -0800 (Fri, 15 Feb 2008)
Log Message:
-----------
add stub definition for has_function. Will be in RO some time soon.
Modified Paths:
--------------
branchDevelopment/trunk/Relations.owl
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From: <jgr...@us...> - 2008-02-15 04:37:10
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Revision: 323
http://obi.svn.sourceforge.net/obi/?rev=323&view=rev
Author: jgreenbaum
Date: 2008-02-14 20:37:15 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
* Added feature to xl2owl to allow removal of empty annotation properties
** updated binaries as well
* Removed empty annotation properties, and branch from PlanAndPlannedProcess.owlp
-- line, and those below, will be ignored--
M trunk/sourcecodes/xl2owl/xl2owl.pl
M trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
M trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
M trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
M trunk/sourcecodes/xl2owl/README
M trunk/PlanAndPlannedProcess.owl
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/sourcecodes/xl2owl/README
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl
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From: <mco...@us...> - 2008-02-15 00:23:36
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Revision: 322
http://obi.svn.sourceforge.net/obi/?rev=322&view=rev
Author: mcourtot
Date: 2008-02-14 16:23:42 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
added location of the external.owl file containing information about classes imported from other ontologies
********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY **********
Modified Paths:
--------------
branchDevelopment/trunk/obi.repository.template.pc
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From: <mco...@us...> - 2008-02-15 00:23:32
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Revision: 321
http://obi.svn.sourceforge.net/obi/?rev=321&view=rev
Author: mcourtot
Date: 2008-02-14 16:23:07 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
added location of the external.owl file containing information about classes imported from other ontologies
********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY **********
Modified Paths:
--------------
branchDevelopment/trunk/obi.repository.template
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From: <mco...@us...> - 2008-02-15 00:22:13
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Revision: 320
http://obi.svn.sourceforge.net/obi/?rev=320&view=rev
Author: mcourtot
Date: 2008-02-14 16:21:46 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
added import of the external.owl file containing information about classes imported from other ontologies.
********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY **********
Modified Paths:
--------------
branchDevelopment/trunk/obi.owl.template
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From: <mco...@us...> - 2008-02-15 00:22:13
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Revision: 319
http://obi.svn.sourceforge.net/obi/?rev=319&view=rev
Author: mcourtot
Date: 2008-02-14 16:19:04 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
This file is imported by external.owl. It contains all the additional information (like definition) that we judge interesting to annotate the imported classes. This is the file we will want to update automatically to get the most recent information from our external data sources.
Added Paths:
-----------
branchDevelopment/trunk/externalDerived.owl
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From: <mco...@us...> - 2008-02-15 00:17:34
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Revision: 318
http://obi.svn.sourceforge.net/obi/?rev=318&view=rev
Author: mcourtot
Date: 2008-02-14 16:17:36 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
This file is the file where we store the minimal information regarding imported classes, like ID and origin. It imports the file containing all the other potentially interesting information (like definition), externalDerived.owl
Added Paths:
-----------
branchDevelopment/trunk/external.owl
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From: <jgr...@us...> - 2008-02-14 18:38:57
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Revision: 317
http://obi.svn.sourceforge.net/obi/?rev=317&view=rev
Author: jgreenbaum
Date: 2008-02-14 10:39:01 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
* Cleaned up OWL file
** added minimal metadata to all assays
** added preferred term to all terms where blank (copied from rdfs:label)
** added branch to all terms
** consolidated example_of_usage & definition_editor fields
** moved all dc:source to definition_citation
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-02-14 15:45:54
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Revision: 316
http://obi.svn.sourceforge.net/obi/?rev=316&view=rev
Author: jamesmalone
Date: 2008-02-14 07:45:34 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
Some housekeeping changes from last teleconf call
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
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From: <all...@us...> - 2008-02-14 10:34:28
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Revision: 315
http://obi.svn.sourceforge.net/obi/?rev=315&view=rev
Author: allysonlister
Date: 2008-02-14 02:34:00 -0800 (Thu, 14 Feb 2008)
Log Message:
-----------
the notes from the last two wednesday calls
Added Paths:
-----------
web/trunk/htdocs/notes/coordinators/20080213.txt
web/trunk/htdocs/notes/developers/2008/20080206.txt
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From: <jgr...@us...> - 2008-02-13 19:06:15
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Revision: 314
http://obi.svn.sourceforge.net/obi/?rev=314&view=rev
Author: jgreenbaum
Date: 2008-02-13 11:06:12 -0800 (Wed, 13 Feb 2008)
Log Message:
-----------
Updated source code and OWL to handle variable file formats
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl
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From: <mco...@us...> - 2008-02-13 15:59:43
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Revision: 313
http://obi.svn.sourceforge.net/obi/?rev=313&view=rev
Author: mcourtot
Date: 2008-02-13 07:59:47 -0800 (Wed, 13 Feb 2008)
Log Message:
-----------
creation placeholders and start moving role classes that were incorrect, for example role applying to process. clean-up to go on at next call
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <jgr...@us...> - 2008-02-12 19:50:07
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Revision: 312
http://obi.svn.sourceforge.net/obi/?rev=312&view=rev
Author: jgreenbaum
Date: 2008-02-12 11:50:03 -0800 (Tue, 12 Feb 2008)
Log Message:
-----------
updated binaries to use PurePerl XML library
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
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From: <dan...@us...> - 2008-02-12 17:38:42
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Revision: 311
http://obi.svn.sourceforge.net/obi/?rev=311&view=rev
Author: daniel_schober
Date: 2008-02-12 09:38:46 -0800 (Tue, 12 Feb 2008)
Log Message:
-----------
cleaned up names, deleting Questionmarks in labels, e.g. # ?interrogation_point
# ?jet_in_air_flow_chamber
add AI into editor note for above.
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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