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From: <jen...@us...> - 2008-02-22 18:59:01
|
Revision: 335 http://obi.svn.sourceforge.net/obi/?rev=335&view=rev Author: jenfostel Date: 2008-02-22 10:59:01 -0800 (Fri, 22 Feb 2008) Log Message: ----------- moved to under discussion: protocol_application, metabolite, funder; finished cleaning non-independent continuant role bearers Modified Paths: -------------- branchDevelopment/trunk/Role.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-21 11:19:29
|
Revision: 334 http://obi.svn.sourceforge.net/obi/?rev=334&view=rev Author: daniel_schober Date: 2008-02-21 02:53:11 -0800 (Thu, 21 Feb 2008) Log Message: ----------- updated device and instrument defs Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-21 10:27:04
|
Revision: 333 http://obi.svn.sourceforge.net/obi/?rev=333&view=rev Author: daniel_schober Date: 2008-02-21 02:25:59 -0800 (Thu, 21 Feb 2008) Log Message: ----------- Modified Paths: -------------- branchDevelopment/trunk/lastac_autoID/default.properties.InstrumentAndPart This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-20 21:42:08
|
Revision: 332 http://obi.svn.sourceforge.net/obi/?rev=332&view=rev Author: mcourtot Date: 2008-02-20 13:42:10 -0800 (Wed, 20 Feb 2008) Log Message: ----------- notes from developer call on 20 of Feb 2008 Added Paths: ----------- web/trunk/htdocs/notes/developers/2008/20080220.txt This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-20 12:08:09
|
Revision: 331 http://obi.svn.sourceforge.net/obi/?rev=331&view=rev Author: daniel_schober Date: 2008-02-20 04:08:14 -0800 (Wed, 20 Feb 2008) Log Message: ----------- Added '_software': This is a placeholder, as was demanded by the instrument branch. I remember we had it before, I guess it was deleted... I have made 2 classes defined classes/XPS with the following nessecary & sufficient restrictions as discussed in yesterdays notes. However I expect these to be refined in the future, bt made them sufficient because I think we want these to be reasoned over. device: material+ has_function some (instrument_function or instrument part function) is_manufactured_by some (organization or person) plattform: device+ (ro:has_part some instrument) and (_software or device) Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <fgi...@us...> - 2008-02-20 10:41:44
|
Revision: 330 http://obi.svn.sourceforge.net/obi/?rev=330&view=rev Author: fgibson_sf Date: 2008-02-20 02:41:42 -0800 (Wed, 20 Feb 2008) Log Message: ----------- Added relations to device: is_manufactured_by some (organisation or person) has_function some obi_function Added relations to platform: has_part some instrument Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jen...@us...> - 2008-02-19 19:38:36
|
Revision: 329 http://obi.svn.sourceforge.net/obi/?rev=329&view=rev Author: jenfostel Date: 2008-02-19 11:38:33 -0800 (Tue, 19 Feb 2008) Log Message: ----------- testing jf Modified Paths: -------------- branchDevelopment/trunk/Role.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-19 17:46:56
|
Revision: 328 http://obi.svn.sourceforge.net/obi/?rev=328&view=rev Author: daniel_schober Date: 2008-02-19 09:46:27 -0800 (Tue, 19 Feb 2008) Log Message: ----------- * interrogation_point--> moved to three dimensional region * jet_in_air_flow_chamber move to 3 dim region--> moved to three dimensional region * Moved plattform under device. Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-19 13:40:24
|
Revision: 327 http://obi.svn.sourceforge.net/obi/?rev=327&view=rev Author: daniel_schober Date: 2008-02-19 05:40:23 -0800 (Tue, 19 Feb 2008) Log Message: ----------- obsoleted 'labware'(which we couldn't come up with a traceable nat lang definition) and moved its former children up, under 'device' Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <al...@us...> - 2008-02-15 19:00:27
|
Revision: 326 http://obi.svn.sourceforge.net/obi/?rev=326&view=rev Author: alanr Date: 2008-02-15 11:00:31 -0800 (Fri, 15 Feb 2008) Log Message: ----------- Replaced sparql generated RDF element with our standard one. This will have to be done as postprocess if we used sparql to define this file Added externalDerived to template, obi.owl Modified Paths: -------------- branchDevelopment/trunk/external.owl branchDevelopment/trunk/externalDerived.owl branchDevelopment/trunk/obi.owl.template This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <al...@us...> - 2008-02-15 18:49:42
|
Revision: 325 http://obi.svn.sourceforge.net/obi/?rev=325&view=rev Author: alanr Date: 2008-02-15 10:49:47 -0800 (Fri, 15 Feb 2008) Log Message: ----------- Some refinements of external. Removed extra class definition of material (harmless) Moved importedFrom to AnnotationProperties.owl Added rdfs:label to externalDerived.owl Modified Paths: -------------- branchDevelopment/trunk/AnnotationProperty.owl branchDevelopment/trunk/external.owl branchDevelopment/trunk/externalDerived.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <al...@us...> - 2008-02-15 17:19:23
|
Revision: 324 http://obi.svn.sourceforge.net/obi/?rev=324&view=rev Author: alanr Date: 2008-02-15 08:23:54 -0800 (Fri, 15 Feb 2008) Log Message: ----------- add stub definition for has_function. Will be in RO some time soon. Modified Paths: -------------- branchDevelopment/trunk/Relations.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jgr...@us...> - 2008-02-15 04:37:10
|
Revision: 323 http://obi.svn.sourceforge.net/obi/?rev=323&view=rev Author: jgreenbaum Date: 2008-02-14 20:37:15 -0800 (Thu, 14 Feb 2008) Log Message: ----------- * Added feature to xl2owl to allow removal of empty annotation properties ** updated binaries as well * Removed empty annotation properties, and branch from PlanAndPlannedProcess.owlp -- line, and those below, will be ignored-- M trunk/sourcecodes/xl2owl/xl2owl.pl M trunk/sourcecodes/xl2owl/binaries/linux/xl2owl M trunk/sourcecodes/xl2owl/binaries/osx/xl2owl M trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe M trunk/sourcecodes/xl2owl/README M trunk/PlanAndPlannedProcess.owl Modified Paths: -------------- branchDevelopment/trunk/PlanAndPlannedProcess.owl branchDevelopment/trunk/sourcecodes/xl2owl/README branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-15 00:23:36
|
Revision: 322 http://obi.svn.sourceforge.net/obi/?rev=322&view=rev Author: mcourtot Date: 2008-02-14 16:23:42 -0800 (Thu, 14 Feb 2008) Log Message: ----------- added location of the external.owl file containing information about classes imported from other ontologies ********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY ********** Modified Paths: -------------- branchDevelopment/trunk/obi.repository.template.pc This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-15 00:23:32
|
Revision: 321 http://obi.svn.sourceforge.net/obi/?rev=321&view=rev Author: mcourtot Date: 2008-02-14 16:23:07 -0800 (Thu, 14 Feb 2008) Log Message: ----------- added location of the external.owl file containing information about classes imported from other ontologies ********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY ********** Modified Paths: -------------- branchDevelopment/trunk/obi.repository.template This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-15 00:22:13
|
Revision: 320 http://obi.svn.sourceforge.net/obi/?rev=320&view=rev Author: mcourtot Date: 2008-02-14 16:21:46 -0800 (Thu, 14 Feb 2008) Log Message: ----------- added import of the external.owl file containing information about classes imported from other ontologies. ********** YOU NEED TO ADJUST OBI.OWL AND OBI.REPOSITORY ********** Modified Paths: -------------- branchDevelopment/trunk/obi.owl.template This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-15 00:22:13
|
Revision: 319 http://obi.svn.sourceforge.net/obi/?rev=319&view=rev Author: mcourtot Date: 2008-02-14 16:19:04 -0800 (Thu, 14 Feb 2008) Log Message: ----------- This file is imported by external.owl. It contains all the additional information (like definition) that we judge interesting to annotate the imported classes. This is the file we will want to update automatically to get the most recent information from our external data sources. Added Paths: ----------- branchDevelopment/trunk/externalDerived.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-15 00:17:34
|
Revision: 318 http://obi.svn.sourceforge.net/obi/?rev=318&view=rev Author: mcourtot Date: 2008-02-14 16:17:36 -0800 (Thu, 14 Feb 2008) Log Message: ----------- This file is the file where we store the minimal information regarding imported classes, like ID and origin. It imports the file containing all the other potentially interesting information (like definition), externalDerived.owl Added Paths: ----------- branchDevelopment/trunk/external.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jgr...@us...> - 2008-02-14 18:38:57
|
Revision: 317 http://obi.svn.sourceforge.net/obi/?rev=317&view=rev Author: jgreenbaum Date: 2008-02-14 10:39:01 -0800 (Thu, 14 Feb 2008) Log Message: ----------- * Cleaned up OWL file ** added minimal metadata to all assays ** added preferred term to all terms where blank (copied from rdfs:label) ** added branch to all terms ** consolidated example_of_usage & definition_editor fields ** moved all dc:source to definition_citation Modified Paths: -------------- branchDevelopment/trunk/PlanAndPlannedProcess.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jam...@us...> - 2008-02-14 15:45:54
|
Revision: 316 http://obi.svn.sourceforge.net/obi/?rev=316&view=rev Author: jamesmalone Date: 2008-02-14 07:45:34 -0800 (Thu, 14 Feb 2008) Log Message: ----------- Some housekeeping changes from last teleconf call Modified Paths: -------------- branchDevelopment/trunk/DataTransformation.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <all...@us...> - 2008-02-14 10:34:28
|
Revision: 315 http://obi.svn.sourceforge.net/obi/?rev=315&view=rev Author: allysonlister Date: 2008-02-14 02:34:00 -0800 (Thu, 14 Feb 2008) Log Message: ----------- the notes from the last two wednesday calls Added Paths: ----------- web/trunk/htdocs/notes/coordinators/20080213.txt web/trunk/htdocs/notes/developers/2008/20080206.txt This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jgr...@us...> - 2008-02-13 19:06:15
|
Revision: 314 http://obi.svn.sourceforge.net/obi/?rev=314&view=rev Author: jgreenbaum Date: 2008-02-13 11:06:12 -0800 (Wed, 13 Feb 2008) Log Message: ----------- Updated source code and OWL to handle variable file formats Modified Paths: -------------- branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <mco...@us...> - 2008-02-13 15:59:43
|
Revision: 313 http://obi.svn.sourceforge.net/obi/?rev=313&view=rev Author: mcourtot Date: 2008-02-13 07:59:47 -0800 (Wed, 13 Feb 2008) Log Message: ----------- creation placeholders and start moving role classes that were incorrect, for example role applying to process. clean-up to go on at next call Modified Paths: -------------- branchDevelopment/trunk/Role.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <jgr...@us...> - 2008-02-12 19:50:07
|
Revision: 312 http://obi.svn.sourceforge.net/obi/?rev=312&view=rev Author: jgreenbaum Date: 2008-02-12 11:50:03 -0800 (Tue, 12 Feb 2008) Log Message: ----------- updated binaries to use PurePerl XML library Modified Paths: -------------- branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |
From: <dan...@us...> - 2008-02-12 17:38:42
|
Revision: 311 http://obi.svn.sourceforge.net/obi/?rev=311&view=rev Author: daniel_schober Date: 2008-02-12 09:38:46 -0800 (Tue, 12 Feb 2008) Log Message: ----------- cleaned up names, deleting Questionmarks in labels, e.g. # ?interrogation_point # ?jet_in_air_flow_chamber add AI into editor note for above. Modified Paths: -------------- branchDevelopment/trunk/InstrumentAndPart.owl This was sent by the SourceForge.net collaborative development platform, the world's largest Open Source development site. |