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From: <al...@us...> - 2008-03-09 04:48:07
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Revision: 410
http://obi.svn.sourceforge.net/obi/?rev=410&view=rev
Author: alanr
Date: 2008-03-08 20:48:13 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
Biomaterial.owl biomaterials (deprecated) gets "_" in front of it's name
PlanAndPlannedProcess.owl two stray classes were in the geneontology namespace
sourcecodes/obi.asd like a java build.xml file for lisp
sourcecodes/qc-queries.lisp some queries useful before release
sourcecodes/add-disjoints.lisp compute the disjoint classes and write disjoints.owl
sourcecodes/uri-report.lisp get a list of uris and their types, for assigning ids
disjoints.owl Computed disjoint class statements
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/sourcecodes/qc-queries.lisp
branchDevelopment/trunk/sourcecodes/uri-report.lisp
Added Paths:
-----------
branchDevelopment/trunk/disjoints.owl
branchDevelopment/trunk/sourcecodes/add-disjoints.lisp
branchDevelopment/trunk/sourcecodes/obi.asd
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From: <al...@us...> - 2008-03-09 00:47:52
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Revision: 409
http://obi.svn.sourceforge.net/obi/?rev=409&view=rev
Author: alanr
Date: 2008-03-08 16:47:57 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
newids take 2
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
branchDevelopment/trunk/obi-owl-full.owl
branchDevelopment/trunk/obi.owl.template
branchDevelopment/trunk/obi.repository.template
branchDevelopment/trunk/obi.repository.template.pc
branchDevelopment/trunk/sourcecodes/modify-uris.pl
Added Paths:
-----------
branchDevelopment/trunk/development-examples/obi-liver.owl
branchDevelopment/trunk/development-examples/reasoner-example-workshop-2007-July.owl
branchDevelopment/trunk/older/Plan.owl
branchDevelopment/trunk/older/Role-staging.owl
branchDevelopment/trunk/older/formats.owl
branchDevelopment/trunk/sourcecodes/qc-queries.lisp
Removed Paths:
-------------
branchDevelopment/trunk/Plan.owl
branchDevelopment/trunk/Role-staging.owl
branchDevelopment/trunk/obi-liver.owl
branchDevelopment/trunk/reasoner-example-workshop-2007-July.owl
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From: <al...@us...> - 2008-03-09 00:04:27
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Revision: 408
http://obi.svn.sourceforge.net/obi/?rev=408&view=rev
Author: alanr
Date: 2008-03-08 16:04:32 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
should have checked this in earlier
Added Paths:
-----------
branchDevelopment/trunk/development-examples/bjoern-petri-dish.owl
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From: <al...@us...> - 2008-03-08 23:06:48
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Revision: 407
http://obi.svn.sourceforge.net/obi/?rev=407&view=rev
Author: alanr
Date: 2008-03-08 15:06:50 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
thing->purl
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/normalize-namespaces.pl
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From: <al...@us...> - 2008-03-08 21:28:05
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Revision: 406
http://obi.svn.sourceforge.net/obi/?rev=406&view=rev
Author: alanr
Date: 2008-03-08 13:28:09 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
new purl.obofoundry.org based ids. Instance-based curation status
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
branchDevelopment/trunk/external.owl
branchDevelopment/trunk/externalDerived.owl
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From: <al...@us...> - 2008-03-08 16:24:40
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Revision: 405
http://obi.svn.sourceforge.net/obi/?rev=405&view=rev
Author: alanr
Date: 2008-03-08 07:43:54 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
get rid of irrelevant stuff from tag
Removed Paths:
-------------
branchDevelopment/tags/2008-03-08-before-ids/instructions-svn-local.txt
branchDevelopment/tags/2008-03-08-before-ids/lastac_autoID/
branchDevelopment/tags/2008-03-08-before-ids/obi-liver.owl
branchDevelopment/tags/2008-03-08-before-ids/obi-lsw-report.html
branchDevelopment/tags/2008-03-08-before-ids/obi-lsw.owl.template
branchDevelopment/tags/2008-03-08-before-ids/sourcecodes/
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From: <al...@us...> - 2008-03-08 15:50:51
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Revision: 404
http://obi.svn.sourceforge.net/obi/?rev=404&view=rev
Author: alanr
Date: 2008-03-08 07:42:09 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
get rid of irrelevant stuff from tag
Removed Paths:
-------------
branchDevelopment/tags/2008-03-08-before-ids/development-examples/
branchDevelopment/tags/2008-03-08-before-ids/older/
branchDevelopment/tags/2008-03-08-before-ids/reasoner-example-workshop-2007-July.owl
branchDevelopment/tags/2008-03-08-before-ids/spreadsheets-exported/
branchDevelopment/tags/2008-03-08-before-ids/spreadsheets-imported/
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From: <al...@us...> - 2008-03-08 15:38:22
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Revision: 403
http://obi.svn.sourceforge.net/obi/?rev=403&view=rev
Author: alanr
Date: 2008-03-08 07:38:23 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
Saving the version before the ids script is run
Added Paths:
-----------
branchDevelopment/tags/2008-03-08-before-ids/
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From: <al...@us...> - 2008-03-08 15:35:14
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Revision: 402
http://obi.svn.sourceforge.net/obi/?rev=402&view=rev
Author: alanr
Date: 2008-03-08 07:31:02 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
final version used to create newids
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/modify-uris.pl
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From: <al...@us...> - 2008-03-08 14:48:03
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Revision: 401
http://obi.svn.sourceforge.net/obi/?rev=401&view=rev
Author: alanr
Date: 2008-03-08 06:48:03 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
xsd:string -> xml:lang=en
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
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From: <al...@us...> - 2008-03-08 14:44:39
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Revision: 400
http://obi.svn.sourceforge.net/obi/?rev=400&view=rev
Author: alanr
Date: 2008-03-08 06:44:27 -0800 (Sat, 08 Mar 2008)
Log Message:
-----------
xsd:string -> xml:lang=en
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
branchDevelopment/trunk/Biomaterial.owl
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/DigitalEntityPlus.owl
branchDevelopment/trunk/InstrumentAndPart.owl
branchDevelopment/trunk/OBI-Function.owl
branchDevelopment/trunk/Obsolete.owl
branchDevelopment/trunk/PlanAndPlannedProcess.owl
branchDevelopment/trunk/Quality.owl
branchDevelopment/trunk/Relations.owl
branchDevelopment/trunk/Role.owl
branchDevelopment/trunk/TheRest.owl
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From: <al...@us...> - 2008-03-08 04:20:39
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Revision: 399
http://obi.svn.sourceforge.net/obi/?rev=399&view=rev
Author: alanr
Date: 2008-03-07 20:20:40 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
removed redundant definition source
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
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From: <al...@us...> - 2008-03-08 04:19:14
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Revision: 398
http://obi.svn.sourceforge.net/obi/?rev=398&view=rev
Author: alanr
Date: 2008-03-07 20:19:19 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
in external.owl, make B-Cell subclass of Cell
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
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From: <mco...@us...> - 2008-03-07 20:11:59
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Revision: 397
http://obi.svn.sourceforge.net/obi/?rev=397&view=rev
Author: mcourtot
Date: 2008-03-07 12:10:16 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
modified our curation_status value to the new ones agreed upon by the developers
removed extra field when required, as new cardinality is 1
Modified Paths:
--------------
branchDevelopment/trunk/InstrumentAndPart.owl
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From: <jgr...@us...> - 2008-03-07 18:57:29
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Revision: 396
http://obi.svn.sourceforge.net/obi/?rev=396&view=rev
Author: jgreenbaum
Date: 2008-03-07 10:57:33 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
* Added option to completely replace all OWL classes in a file with those in a tab-delimited file
* Updated binaries & README accordingly
Modified Paths:
--------------
branchDevelopment/trunk/sourcecodes/xl2owl/README
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/linux/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/osx/xl2owl
branchDevelopment/trunk/sourcecodes/xl2owl/binaries/windows/xl2owl.exe
branchDevelopment/trunk/sourcecodes/xl2owl/xl2owl.pl
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From: <mco...@us...> - 2008-03-07 17:47:40
|
Revision: 395
http://obi.svn.sourceforge.net/obi/?rev=395&view=rev
Author: mcourtot
Date: 2008-03-07 09:47:43 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
removed restriction from cell entity to biomaterial deprecated
Modified Paths:
--------------
branchDevelopment/trunk/Biomaterial.owl
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From: <mco...@us...> - 2008-03-07 17:47:23
|
Revision: 394
http://obi.svn.sourceforge.net/obi/?rev=394&view=rev
Author: mcourtot
Date: 2008-03-07 09:47:29 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
removed restriction from cell entity to biomaterial deprecated
Modified Paths:
--------------
branchDevelopment/trunk/external.owl
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From: <jen...@us...> - 2008-03-07 15:56:50
|
Revision: 393
http://obi.svn.sourceforge.net/obi/?rev=393&view=rev
Author: jenfostel
Date: 2008-03-07 07:56:54 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
added citations and _role tags; clarified definition of responsible party
Modified Paths:
--------------
branchDevelopment/trunk/Role.owl
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From: <jam...@us...> - 2008-03-07 15:47:54
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Revision: 392
http://obi.svn.sourceforge.net/obi/?rev=392&view=rev
Author: jamesmalone
Date: 2008-03-07 07:47:58 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
Metadata cleanup: curation_status mapped to new enumerated values, definition_source replaces definition_citation. Some work on normalising definitions using x is a y which does z (unfinished). JM
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
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From: <jam...@us...> - 2008-03-07 15:39:54
|
Revision: 391
http://obi.svn.sourceforge.net/obi/?rev=391&view=rev
Author: jamesmalone
Date: 2008-03-07 07:39:52 -0800 (Fri, 07 Mar 2008)
Log Message:
-----------
Addition of definition_source annotation property to be used in future in place of definition_citation as agreed on committee vote (NOTE: definition_citation is still in file). JM
Modified Paths:
--------------
branchDevelopment/trunk/AnnotationProperty.owl
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From: <mco...@us...> - 2008-03-07 00:59:29
|
Revision: 390
http://obi.svn.sourceforge.net/obi/?rev=390&view=rev
Author: mcourtot
Date: 2008-03-06 16:59:31 -0800 (Thu, 06 Mar 2008)
Log Message:
-----------
added obi-dev call notes 20080305
Added Paths:
-----------
web/trunk/htdocs/notes/developers/2008/20080305.txt
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From: <jgr...@us...> - 2008-03-07 00:53:30
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Revision: 389
http://obi.svn.sourceforge.net/obi/?rev=389&view=rev
Author: jgreenbaum
Date: 2008-03-06 16:53:22 -0800 (Thu, 06 Mar 2008)
Log Message:
-----------
* Cleanup of PlanAndPlannedProcess.owl - added minimal metadata where missing, removed underscores from labels, etc.
* Changed "_induction of natural process" class ID to "Class_222" as it conflicted with "realizable information entit
y" which also has a class ID of "Class_2"
* Changed "waiting" class ID to "Class_111" as it conflicted with "specification" which also has a class ID of "Class
_1"
Modified Paths:
--------------
branchDevelopment/trunk/PlanAndPlannedProcess.owl
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From: <jam...@us...> - 2008-03-06 14:46:52
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Revision: 388
http://obi.svn.sourceforge.net/obi/?rev=388&view=rev
Author: jamesmalone
Date: 2008-03-06 06:43:44 -0800 (Thu, 06 Mar 2008)
Log Message:
-----------
Addition of feature class, log_base and has_feature_value datatype property (and revision number update - this time!) JM
Modified Paths:
--------------
branchDevelopment/trunk/Relations.owl
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From: <jam...@us...> - 2008-03-06 14:46:52
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Revision: 387
http://obi.svn.sourceforge.net/obi/?rev=387&view=rev
Author: jamesmalone
Date: 2008-03-06 06:42:13 -0800 (Thu, 06 Mar 2008)
Log Message:
-----------
Addition of feature class, log_base and has_feature_value datatype property (and revision number update) JM
Modified Paths:
--------------
branchDevelopment/trunk/Relations.owl
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From: <jam...@us...> - 2008-03-06 14:30:29
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Revision: 386
http://obi.svn.sourceforge.net/obi/?rev=386&view=rev
Author: jamesmalone
Date: 2008-03-06 06:30:23 -0800 (Thu, 06 Mar 2008)
Log Message:
-----------
Addition of feature class, log_base and has_feature_value datatype property JM
Modified Paths:
--------------
branchDevelopment/trunk/DataTransformation.owl
branchDevelopment/trunk/Relations.owl
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