We see that the section headings which were in
roman numerals are all being converted to arabic,
and being re-sized significantly.
Errors from latex2rtf which may be relevant:
AFRL_Status_Report_2.tex:14 Unknown command '\sectionfont'{\fs29 } AFRL_Status_Report_2.tex:15 Unknown command '\subsectionfont'{\fs24 \i0\scaps0\b } AFRL_Status_Report_2.tex:16 Unknown command '\subsubsectionfont'{\fs24 \scaps0\b0\i }