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From: Noah C. <noa...@gm...> - 2020-08-31 17:57:06
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). The next such meeting is on September 1st. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20200901T11&p1=843&ah=1&am=30> Tuesday’s meeting will discuss the proposed Tripal File Module. The agenda can be found here. <https://docs.google.com/document/d/16nCStMa1iWR3Z_KpTtf1aRairvnRWfLXrX2GbHA63JQ/edit> Within the agenda is the original specification document, a link to a more recent look at the module, and a summary of each. Visiting these and thinking about your flat file needs before the meeting would be appreciated. Join from PC, Mac, Linux, iOS or Android: https://tennessee.zoom.us/j/8757025403 Or iPhone one-tap (US Toll): +13126266799,8757025403# Or Telephone: Dial: +1 312 626 6799 (US Toll) Meeting ID: 875 702 5403 International numbers available: https://tennessee.zoom.us/u/adFMFyf0vt |
From: Meg S. <me...@gm...> - 2020-08-29 15:39:02
|
Job announcement for a bioinformatics web/database developer. Not in Tripal but mentions a lot of overlapping technologies. Meg ---------- Forwarded message --------- From: Abby Meyer <abb...@bg...> Date: Fri, Aug 28, 2020 at 5:13 PM Subject: BGCI Database Manager To: me...@gm... <me...@gm...> Hi Meg, Sean Hoban suggested I contact you about a position we are hiring at BGCI. If you have any interest or recommendations for those that may be interested in this position, please get in touch with me. We are hoping to hire someone by October, this position could be based in the US or the UK, which poses a great opportunity to align with a garden local to the person we hire. I am super excited about the additional capacity this will bring to BGCI and the botanic garden and plant conservation communities. Thanks! Abby Abby Meyer Executive Director Botanic Gardens Conservation International U.S. at The Huntington Library, Art Museum & Botanical Gardens, San Marino, CA www.bgci.org +1 308-293-1782 abb...@bg... [image: cid:ima...@01...D55040] This e-mail is for the addressee only. If received in error, please delete and notify us immediately. Any unauthorised access, disclosure, copying, distribution or reliance on it, is prohibited. BGCI is a registered charity and company, limited by guarantee, in England and Wales, and in the U.S. as a 501(c)(3) non-profit organization. Registered UK address: Descanso House, 199 Kew Road, Richmond, Surrey, TW9 3BW, UK, Charity number: 1098834, Company Number: 04673175 www.bgci.org -- Margaret Staton Associate Professor Department of Entomology and Plant Pathology Office: 154 PBB Mail: 370 PBB, 2505 EJ Chapman Drive Knoxville, TN 37996-4560 she/her/hers 864-506-4515 Mobile mst...@ut... |
From: Noah C. <noa...@gm...> - 2020-08-27 15:21:37
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). The next such meeting is on September 1st. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20200901T11&p1=843&ah=1&am=30> Tuesday’s meeting will discuss the proposed Tripal File Module. The agenda can be found here. <https://docs.google.com/document/d/16nCStMa1iWR3Z_KpTtf1aRairvnRWfLXrX2GbHA63JQ/edit> Within the agenda is the original specification document, a link to a more recent look at the module, and a summary of each. Visiting these and thinking about your flat file needs before the meeting would be appreciated. Join from PC, Mac, Linux, iOS or Android: https://tennessee.zoom.us/j/8757025403 Or iPhone one-tap (US Toll): +13126266799,8757025403# Or Telephone: Dial: +1 312 626 6799 (US Toll) Meeting ID: 875 702 5403 International numbers available: https://tennessee.zoom.us/u/adFMFyf0vt |
From: Tapia, A. C. <and...@uk...> - 2020-08-03 19:25:56
|
I can confirm that the command below works. PGPASSWORD='*******' psql -U chado -h localhost gmod-chado -c 'SELECT * FROM cv LIMIT 1; SELECT * FROM db LIMIT 1;' I tried logging the queries made as the "Prepare Chado" job runs, and it looks like Tripal is still trying to find the tables in the drupal database. I've pasted a few lines from the log below. 2020-08-03 14:34:12.568 EDT,"drupal","drupal",580,"127.0.0.1:57090",5f2858a4.244,90,"idle",2020-08-03 14:34:12 EDT,3/817,0,LOG,00000,"statement: SET search_path TO chado,public",,,,,,,,,"" 2020-08-03 14:34:12.568 EDT,"drupal","drupal",580,"127.0.0.1:57090",5f2858a4.244,91,"idle",2020-08-03 14:34:12 EDT,3/818,0,LOG,00000,"statement: SELECT * FROM db WHERE name = 'NCIT' ",,,,,\ ,,,,"" 2020-08-03 14:34:12.568 EDT,"drupal","drupal",580,"127.0.0.1:57090",5f2858a4.244,92,"SELECT",2020-08-03 14:34:12 EDT,3/818,0,ERROR,42P01,"relation ""db"" does not exist",,,,,,"SELECT * FRO\ M db WHERE name = 'NCIT' ",15,,"" Do you have any other ideas for what I could try to troubleshoot this? Thanks, Andrew Tapia ________________________________ From: bradford condon <bra...@gm...> Sent: Sunday, August 2, 2020 5:00 PM To: Tapia, Andrew C. <and...@uk...> Cc: gmo...@li... <gmo...@li...> Subject: Re: [Gmod-tripal] External Chado support with Tripal v3.3 CAUTION: External Sender To my knowledge Tripal 3.3 supports an external Chado database, and the Chado prepare DB job should be compatible with an external chado database. Have you verified that you are able to connect to your chado database with those credentials, and that a CV and DB table exists? Your configuration looks correct to me. On Jul 31, 2020, at 7:46 AM, Tapia, Andrew C. <and...@uk...<mailto:and...@uk...>> wrote: Hi, I am currently experimenting with setting up a Tripal site, and I wanted to know if it is still possible to use an external Chado database with Tripal v3.3. I tried adding the following code to my settings.php file (as suggested in https://sourceforge.net/p/gmod/mailman/message/34332841/<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fp%2Fgmod%2Fmailman%2Fmessage%2F34332841%2F&data=02%7C01%7Candrew.tapia%40uky.edu%7Ce342184686684a330dc808d8372718b3%7C2b30530b69b64457b818481cb53d42ae%7C0%7C1%7C637319988347080413&sdata=yrLmp%2BeGXbLouMtu9MMxaJfT5om4O7MonW0%2FdKd7Zec%3D&reserved=0>). $databases['chado']['default'] = array( 'driver' => 'pgsql', 'database' => 'gmod-chado', 'username' => 'chado', 'password' => '*******', 'host' => 'localhost', 'prefix' => '', ); Although it seems that Tripal recognizes that Chado is installed when the above code is in settings.php, Tripal still warns that Drupal and Chado need to be prepared, and running the "Prepare Chado" job gives an error like the one below. Job execution failed: PDOException: SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "db" does not exist [error] LINE 1: SELECT * FROM db WHERE name = 'NCIT' ^ in /var/www/html/includes/database/database.inc:2227 Stack trace: #0 /var/www/html/includes/database/database.inc(2227): PDOStatement->execute(Array) #1 /var/www/html/includes/database/pgsql/database.inc(111): DatabaseStatementBase->execute(Array, Array) #2 /var/www/html/includes/database/database.inc(2406): DatabaseConnection_pgsql->query('SELECT * FROM {...', Array, Array) #3 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1808): db_query('SELECT * FROM {...', Array) #4 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1612): chado_query('SELECT * FROM {...', Array) #5 /var/www/html/sites/all/modules/tripal/tripal_chado/api/modules/tripal_chado.db.api.inc(376): chado_select_record('db', Array, Array) #6 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(78): chado_insert_db(Array) #7 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(235): tripal_chado_load_ontologies() #8 /var/www/html/sites/all/modules/tripal/tripal/includes/TripalJob.inc(341): tripal_chado_prepare_chado(Object(TripalJob)) #9 /var/www/html/sites/all/modules/tripal/tripal/api/tripal.jobs.api.inc(419): TripalJob->run() #10 /var/www/html/sites/all/modules/tripal/tripal/tripal.drush.inc(236): tripal_launch_job(0, '34', -1, 0) #11 /root/.composer/vendor/drush/drush/includes/command.inc(361): drush_tripal_trp_run_jobs() #12 /root/.composer/vendor/drush/drush/includes/command.inc(212): _drush_invoke_hooks(Array, Array) #13 /root/.composer/vendor/drush/drush/includes/command.inc(180): drush_command() #14 /root/.composer/vendor/drush/drush/lib/Drush/Boot/BaseBoot.php(64): drush_dispatch(Array) #15 /root/.composer/vendor/drush/drush/drush.php(70): Drush\Boot\BaseBoot->bootstrap_and_dispatch() #16 /root/.composer/vendor/drush/drush/drush.php(11): drush_main() #17 {main} Likewise, attempting to load an OBO file gives this sort of error. SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not exist LINE 1: SELECT * FROM cv CV ^ [site http://default<http://default/>] [TRIPAL ERROR] [TRIPAL_JOB] SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not existLINE 1: SELECT * FROM cv CV Are external Chado databases still supported, or could this just be a problem with my configuration? Thanks, Andrew Tapia _______________________________________________ Gmod-tripal mailing list Gmo...@li...<mailto:Gmo...@li...> https://lists.sourceforge.net/lists/listinfo/gmod-tripal<https://nam04.safelinks.protection.outlook.com/?url=https%3A%2F%2Flists.sourceforge.net%2Flists%2Flistinfo%2Fgmod-tripal&data=02%7C01%7Candrew.tapia%40uky.edu%7Ce342184686684a330dc808d8372718b3%7C2b30530b69b64457b818481cb53d42ae%7C0%7C1%7C637319988347090407&sdata=YrZN7W0phMA%2BgmMtLzyAypUDf6t0hhjLHYMwvKnXJeM%3D&reserved=0> |
From: bradford c. <bra...@gm...> - 2020-08-02 21:00:39
|
To my knowledge Tripal 3.3 supports an external Chado database, and the Chado prepare DB job should be compatible with an external chado database. Have you verified that you are able to connect to your chado database with those credentials, and that a CV and DB table exists? Your configuration looks correct to me. > On Jul 31, 2020, at 7:46 AM, Tapia, Andrew C. <and...@uk...> wrote: > > Hi, > > I am currently experimenting with setting up a Tripal site, and I wanted to know if it is still possible to use an external Chado database with Tripal v3.3. > > I tried adding the following code to my settings.php file (as suggested in https://sourceforge.net/p/gmod/mailman/message/34332841/ <https://sourceforge.net/p/gmod/mailman/message/34332841/>). > > $databases['chado']['default'] = array( > 'driver' => 'pgsql', > 'database' => 'gmod-chado', > 'username' => 'chado', > 'password' => '*******', > 'host' => 'localhost', > 'prefix' => '', > ); > > Although it seems that Tripal recognizes that Chado is installed when the above code is in settings.php, Tripal still warns that Drupal and Chado need to be prepared, and running the "Prepare Chado" job gives an error like the one below. > > Job execution failed: PDOException: SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "db" does not exist [error] > LINE 1: SELECT * FROM db WHERE name = 'NCIT' > ^ in /var/www/html/includes/database/database.inc:2227 > Stack trace: > #0 /var/www/html/includes/database/database.inc(2227): PDOStatement->execute(Array) > #1 /var/www/html/includes/database/pgsql/database.inc(111): DatabaseStatementBase->execute(Array, Array) > #2 /var/www/html/includes/database/database.inc(2406): DatabaseConnection_pgsql->query('SELECT * FROM {...', Array, Array) > #3 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1808): db_query('SELECT * FROM {...', Array) > #4 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1612): chado_query('SELECT * FROM {...', Array) > #5 /var/www/html/sites/all/modules/tripal/tripal_chado/api/modules/tripal_chado.db.api.inc(376): chado_select_record('db', Array, Array) > #6 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(78): chado_insert_db(Array) > #7 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(235): tripal_chado_load_ontologies() > #8 /var/www/html/sites/all/modules/tripal/tripal/includes/TripalJob.inc(341): tripal_chado_prepare_chado(Object(TripalJob)) > #9 /var/www/html/sites/all/modules/tripal/tripal/api/tripal.jobs.api.inc(419): TripalJob->run() > #10 /var/www/html/sites/all/modules/tripal/tripal/tripal.drush.inc(236): tripal_launch_job(0, '34', -1, 0) > #11 /root/.composer/vendor/drush/drush/includes/command.inc(361): drush_tripal_trp_run_jobs() > #12 /root/.composer/vendor/drush/drush/includes/command.inc(212): _drush_invoke_hooks(Array, Array) > #13 /root/.composer/vendor/drush/drush/includes/command.inc(180): drush_command() > #14 /root/.composer/vendor/drush/drush/lib/Drush/Boot/BaseBoot.php(64): drush_dispatch(Array) > #15 /root/.composer/vendor/drush/drush/drush.php(70): Drush\Boot\BaseBoot->bootstrap_and_dispatch() > #16 /root/.composer/vendor/drush/drush/drush.php(11): drush_main() > #17 {main} > > Likewise, attempting to load an OBO file gives this sort of error. > > SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not exist > LINE 1: SELECT * FROM cv CV > ^ > [site http://default <http://default/>] [TRIPAL ERROR] [TRIPAL_JOB] SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not existLINE 1: SELECT * FROM cv CV > > > Are external Chado databases still supported, or could this just be a problem with my configuration? > > Thanks, > > Andrew Tapia > _______________________________________________ > Gmod-tripal mailing list > Gmo...@li... <mailto:Gmo...@li...> > https://lists.sourceforge.net/lists/listinfo/gmod-tripal <https://lists.sourceforge.net/lists/listinfo/gmod-tripal> |
From: Noah C. <noa...@gm...> - 2020-07-31 14:44:01
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). As such, there is a meeting August 4th. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20200804T11&p1=843&ah=1&am=30> Tuesday’s meeting will discuss the Tripal white paper, a future HacktoberFest, and feature a short demo on Tripal Phylotree. The agenda can be found here. <https://docs.google.com/document/d/1mDgd3w7IX00Ir-_CiM_018fttzV8pirgrQbtlQZ37L4/edit#> Join from PC, Mac, Linux, iOS or Android: https://tennessee.zoom.us/j/92913562915 Or iPhone one-tap (US Toll): +16468769923,92913562915# or +13017158592,92913562915# Or Telephone: Dial: +1 646 876 9923 (US Toll) +1 301 715 8592 (US Toll) Meeting ID: 929 1356 2915 International numbers available: https://tennessee.zoom.us/u/acrX0xGWQ |
From: Tapia, A. C. <and...@uk...> - 2020-07-31 12:21:11
|
Hi, I am currently experimenting with setting up a Tripal site, and I wanted to know if it is still possible to use an external Chado database with Tripal v3.3. I tried adding the following code to my settings.php file (as suggested in https://sourceforge.net/p/gmod/mailman/message/34332841/). $databases['chado']['default'] = array( 'driver' => 'pgsql', 'database' => 'gmod-chado', 'username' => 'chado', 'password' => '*******', 'host' => 'localhost', 'prefix' => '', ); Although it seems that Tripal recognizes that Chado is installed when the above code is in settings.php, Tripal still warns that Drupal and Chado need to be prepared, and running the "Prepare Chado" job gives an error like the one below. Job execution failed: PDOException: SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "db" does not exist [error] LINE 1: SELECT * FROM db WHERE name = 'NCIT' ^ in /var/www/html/includes/database/database.inc:2227 Stack trace: #0 /var/www/html/includes/database/database.inc(2227): PDOStatement->execute(Array) #1 /var/www/html/includes/database/pgsql/database.inc(111): DatabaseStatementBase->execute(Array, Array) #2 /var/www/html/includes/database/database.inc(2406): DatabaseConnection_pgsql->query('SELECT * FROM {...', Array, Array) #3 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1808): db_query('SELECT * FROM {...', Array) #4 /var/www/html/sites/all/modules/tripal/tripal_chado/api/tripal_chado.query.api.inc(1612): chado_query('SELECT * FROM {...', Array) #5 /var/www/html/sites/all/modules/tripal/tripal_chado/api/modules/tripal_chado.db.api.inc(376): chado_select_record('db', Array, Array) #6 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(78): chado_insert_db(Array) #7 /var/www/html/sites/all/modules/tripal/tripal_chado/includes/setup/tripal_chado.setup.inc(235): tripal_chado_load_ontologies() #8 /var/www/html/sites/all/modules/tripal/tripal/includes/TripalJob.inc(341): tripal_chado_prepare_chado(Object(TripalJob)) #9 /var/www/html/sites/all/modules/tripal/tripal/api/tripal.jobs.api.inc(419): TripalJob->run() #10 /var/www/html/sites/all/modules/tripal/tripal/tripal.drush.inc(236): tripal_launch_job(0, '34', -1, 0) #11 /root/.composer/vendor/drush/drush/includes/command.inc(361): drush_tripal_trp_run_jobs() #12 /root/.composer/vendor/drush/drush/includes/command.inc(212): _drush_invoke_hooks(Array, Array) #13 /root/.composer/vendor/drush/drush/includes/command.inc(180): drush_command() #14 /root/.composer/vendor/drush/drush/lib/Drush/Boot/BaseBoot.php(64): drush_dispatch(Array) #15 /root/.composer/vendor/drush/drush/drush.php(70): Drush\Boot\BaseBoot->bootstrap_and_dispatch() #16 /root/.composer/vendor/drush/drush/drush.php(11): drush_main() #17 {main} Likewise, attempting to load an OBO file gives this sort of error. SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not exist LINE 1: SELECT * FROM cv CV ^ [site http://default] [TRIPAL ERROR] [TRIPAL_JOB] SQLSTATE[42P01]: Undefined table: 7 ERROR: relation "cv" does not existLINE 1: SELECT * FROM cv CV Are external Chado databases still supported, or could this just be a problem with my configuration? Thanks, Andrew Tapia |
From: Peter R. <pet...@uc...> - 2020-07-24 16:15:06
|
Hello all, The TreeGenes team will be hosting another weekly Tripal Core Dev meeting this coming Monday, July 27th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&source=calendar&ust=1595951582464000&usg=AOvVaw3B0zJ8u_CrWpZCAmozIvgh>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Peter R. <pet...@uc...> - 2020-07-18 13:14:40
|
Hello all, The TreeGenes team will be hosting another weekly Tripal Core Dev meeting this coming Monday, July 20th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&source=calendar&ust=1595443266965000&usg=AOvVaw2_9nYjeX4PDpAOe-Cpre5l>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Meg S. <me...@gm...> - 2020-07-16 13:22:39
|
Don't forget to fill out the Tripal surveys if you haven't already, preferably by tomorrow! (And major thanks to those who have already done so.) This is going to help to steer our future directions as a community AND really strengthen the white paper. Double win for Tripal! Meg Previous notice with links: We (Lacey, Ethy, Meg, Jill, Stephen) are writing a white paper, and we need your input. *It is super important for EVERYONE to help out and take these surveys*! We have two surveys for you to take: *Anonymous survey <https://forms.gle/vnhxAsTBP37Jwbse8>* - future directions, technologies, tripal community - help steer where we go! This one is for *everyone* to take. Developer, PI, DB manager, biocurator, students, we need all of you! (https://forms.gle/vnhxAsTBP37Jwbse8) *Non Anonymous survey <https://forms.gle/EjySFMm9cG3YkMGu7>* - we are asking for *one response per Tripal database*. This is going to ask some pretty data intensive questions, so get ready - How many unique users have you had in the past year? How much money has supported your database? What extension modules are you using? (https://forms.gle/EjySFMm9cG3YkMGu7) *Why is this so important? *This white paper will present to the world how important and well established the Tripal community is and our overall impact on research. We hope this will help us to get more member databases, secure funding for needed improvements and updates, and generally just make us more visible to the research world. On Tue, Jul 7, 2020 at 11:58 AM Meg Staton <me...@gm...> wrote: > Hi, Tripal Community, > > We (Lacey, Ethy, Meg, Jill, Stephen) are writing a white paper, and we > need your input. *It is super important for EVERYONE to help out and take > these surveys*! We have two surveys for you to take: > > *Anonymous survey <https://forms.gle/vnhxAsTBP37Jwbse8>* - future > directions, technologies, tripal community - help steer where we go! This > one is for *everyone* to take. Developer, PI, DB manager, biocurator, > students, we need all of you! (https://forms.gle/vnhxAsTBP37Jwbse8) > > *Non Anonymous survey <https://forms.gle/EjySFMm9cG3YkMGu7>* - we are > asking for *one response per Tripal database*. This is going to ask some > pretty data intensive questions, so get ready - How many unique users have > you had in the past year? How much money has supported your database? What > extension modules are you using? > (https://forms.gle/EjySFMm9cG3YkMGu7) > > *Why is this so important? *This white paper will present to the world > how important and well established the Tripal community is and our overall > impact on research. We hope this will help us to get more member databases, > secure funding for needed improvements and updates, and generally just make > us more visible to the research world. > > Your help is greatly appreciated. Please try to* fill out by July 14th *(although > if you need more time, let me know, participation is essential!) > > Meg > > -- > Margaret Staton > Assistant Professor > Department of Entomology and Plant Pathology > Office: 154 PBB > Mail: 370 PBB, 2505 EJ Chapman Drive > Knoxville, TN 37996-4560 > she/her/hers > > 864-506-4515 Mobile > mst...@ut... > > > > > -- Margaret Staton Assistant Professor Department of Entomology and Plant Pathology Office: 154 PBB Mail: 370 PBB, 2505 EJ Chapman Drive Knoxville, TN 37996-4560 she/her/hers 864-506-4515 Mobile mst...@ut... |
From: Peter R. <pet...@uc...> - 2020-07-10 18:16:36
|
Hello all, The TreeGenes team will be hosting another weekly Tripal Core Dev meeting this coming Monday, July 13th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&source=calendar&ust=1594751134978000&usg=AOvVaw3IxX-Dx_rCD5BMV6JsTlga>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Meg S. <me...@gm...> - 2020-07-07 15:59:18
|
Hi, Tripal Community, We (Lacey, Ethy, Meg, Jill, Stephen) are writing a white paper, and we need your input. *It is super important for EVERYONE to help out and take these surveys*! We have two surveys for you to take: *Anonymous survey <https://forms.gle/vnhxAsTBP37Jwbse8>* - future directions, technologies, tripal community - help steer where we go! This one is for *everyone* to take. Developer, PI, DB manager, biocurator, students, we need all of you! (https://forms.gle/vnhxAsTBP37Jwbse8) *Non Anonymous survey <https://forms.gle/EjySFMm9cG3YkMGu7>* - we are asking for *one response per Tripal database*. This is going to ask some pretty data intensive questions, so get ready - How many unique users have you had in the past year? How much money has supported your database? What extension modules are you using? (https://forms.gle/EjySFMm9cG3YkMGu7) *Why is this so important? *This white paper will present to the world how important and well established the Tripal community is and our overall impact on research. We hope this will help us to get more member databases, secure funding for needed improvements and updates, and generally just make us more visible to the research world. Your help is greatly appreciated. Please try to* fill out by July 14th *(although if you need more time, let me know, participation is essential!) Meg -- Margaret Staton Assistant Professor Department of Entomology and Plant Pathology Office: 154 PBB Mail: 370 PBB, 2505 EJ Chapman Drive Knoxville, TN 37996-4560 she/her/hers 864-506-4515 Mobile mst...@ut... |
From: Noah C. <noa...@gm...> - 2020-07-06 19:45:32
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC), with every third meeting being a Tripal Advisory Committee Meeting. The meeting scheduled for tomorrow, July 7th, is a TAC Meeting, but as usual all are welcome to attend. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Advisory+Committee+Meeting&iso=20200707T11&p1=843&ah=1&am=30> Tuesday’s meeting will discuss the Tripal white paper and community surveys. The agenda can be found here. <https://docs.google.com/document/d/1DPt7evqaoNg6creX6yscNnPPAA4dbMs2BSvPg-oyAB4/edit?usp=sharing> Join from PC, Mac, Linux, iOS or Android: https://tennessee.zoom.us/j/97421174673 <https://www.google.com/url?q=https://tennessee.zoom.us/j/97421174673&sa=D&source=calendar&usd=2&usg=AOvVaw2HcQuFHhLrQsBTQ7T50b79> Or iPhone one-tap (US Toll): +13017158592,97421174673# or +13126266799,97421174673# Or Telephone: Dial: +1 301 715 8592 (US Toll) +1 312 626 6799 (US Toll) Meeting ID: 974 2117 4673 International numbers available: https://tennessee.zoom.us/u/ac2D14fnLR <https://www.google.com/url?q=https://tennessee.zoom.us/u/ac2D14fnLR&sa=D&source=calendar&usd=2&usg=AOvVaw3JfD3JTwKoWfb0SKJioqJY> |
From: Peter R. <pet...@uc...> - 2020-07-03 16:05:28
|
Hello all, The TreeGenes team will be hosting another weekly Tripal Core Dev meeting this coming Monday, July 6th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&source=calendar&ust=1594128653492000&usg=AOvVaw3XYzbDx7ni8NR07Y8jQzR9>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Noah C. <noa...@gm...> - 2020-07-02 21:50:42
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC), with every third meeting being a Tripal Advisory Committee Meeting. The meeting scheduled for next Tuesday, July 7th, is a TAC Meeting, but all are welcome to attend. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Advisory+Committee+Meeting&iso=20200707T11&p1=843&ah=1&am=30> Tuesday’s meeting will discuss the Tripal white paper and community surveys. The agenda can be found here. <https://docs.google.com/document/d/1DPt7evqaoNg6creX6yscNnPPAA4dbMs2BSvPg-oyAB4/edit?usp=sharing> Join from PC, Mac, Linux, iOS or Android: https://tennessee.zoom.us/j/97421174673 <https://www.google.com/url?q=https://tennessee.zoom.us/j/97421174673&sa=D&source=calendar&usd=2&usg=AOvVaw2HcQuFHhLrQsBTQ7T50b79> Or iPhone one-tap (US Toll): +13017158592,97421174673# or +13126266799,97421174673# Or Telephone: Dial: +1 301 715 8592 (US Toll) +1 312 626 6799 (US Toll) Meeting ID: 974 2117 4673 International numbers available: https://tennessee.zoom.us/u/ac2D14fnLR <https://www.google.com/url?q=https://tennessee.zoom.us/u/ac2D14fnLR&sa=D&source=calendar&usd=2&usg=AOvVaw3JfD3JTwKoWfb0SKJioqJY> |
From: Peter R. <pet...@uc...> - 2020-06-26 16:59:50
|
Hello all, The TreeGenes team will be hosting another weekly Tripal Core Dev meeting this coming Monday, June 29th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&source=calendar&ust=1593609119939000&usg=AOvVaw1MqFmJGTr-rFAebUeBoCQm>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Peter R. <pet...@uc...> - 2020-06-19 16:37:54
|
Hello all, The TreeGenes team will be hosting another (now weekly) Tripal Core Dev meeting this coming Monday, June 22nd at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&ust=1593016560762000&usg=AOvVaw2teoqYLtxEqAeVTbA2kdBh>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Peter R. <pet...@uc...> - 2020-06-19 01:03:25
|
Hello all, I have some exciting news! Since more people are being enlisted to work on Tripal 4 officially and development has been picking up speed, we have decided to start holding our Tripal Core Dev meetings on a weekly basis (they were previously bi-weekly)! They will be held at the same time (Mondays at 4pm EDT) and have the same structure as before, and I will continue to send reminders both through this mailing list and the Tripal #general slack channel <https://tripal-project.slack.com/archives/C63AQ0FQE>. The next meeting is Monday, June 22nd, and I will send an announcement on Friday. The agenda can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&ust=1592055185932000&usg=AOvVaw0jv19flhVxm7ZnBU694my3> and includes the zoom link. We hope you are able to join us! Best, Peter Richter |
From: Peter R. <pet...@uc...> - 2020-06-05 17:09:17
|
Hello all, The TreeGenes team will be hosting another bi-weekly Tripal Core Dev meeting this coming Monday, June 8th at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&ust=1591717690277000&usg=AOvVaw0O9ETYX7pvuBJeJ9_Och7H>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Noah C. <noa...@gm...> - 2020-06-01 15:39:16
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User's Meeting hosted by the Tripal Advisory Committee (TAC). June's meeting will be on 2020/06/02 at 11am EST. All are welcome to attend. As this is a worldwide meeting, the exact time for the meeting in your area can be found at this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20200602T11&p1=843&ah=1&am=30 Tuesday's meeting will discuss a few Tripal 3 and 4 updates, the upcoming Tripal White Paper, and feature a demo of a Tripal 4 Drupal 8 website. The agenda can be accessed at the link below; if you have any additional items you'd like to announce or discuss, please add to the google doc. https://docs.google.com/document/d/1TLMhOwOaQILRE4jSF6Q_CohXJJxjbvVITi5KzPs8Tro/edit#heading=h.3vr5ggrrpdyq Finally, the meeting itself can be reached at https://tennessee.zoom.us/j/95829655219. Please direct any additional questions to noa...@gm.... Best, Noah Caldwell |
From: Noah C. <noa...@gm...> - 2020-05-28 16:04:13
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User's Meeting hosted by the Tripal Advisory Committee (TAC). July's meeting will be on 2020/06/02 at 11am EST. All are welcome to attend. As this is a worldwide meeting, the exact time for the meeting in your area can be found at this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20200602T11&p1=843&ah=1&am=30 Tuesday's meeting will discuss a few Tripal 3 and 4 updates, the upcoming Tripal White Paper, and feature a demo of a Tripal 4 Drupal 8 website. The agenda can be accessed at the link below; if you have any additional items you'd like to announce or discuss, please add to the google doc. https://docs.google.com/document/d/1TLMhOwOaQILRE4jSF6Q_CohXJJxjbvVITi5KzPs8Tro/edit#heading=h.3vr5ggrrpdyq Finally, the meeting itself can be reached at https://tennessee.zoom.us/j/95829655219. Please direct any additional questions to noa...@gm.... Best, Noah Caldwell |
From: Peter R. <pet...@uc...> - 2020-05-08 16:31:52
|
Hello all, The TreeGenes team will be hosting another bi-weekly Tripal Core Dev meeting this coming Monday, May 11 at 4pm, EDT. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&ust=1589323739970000&usg=AOvVaw3ONEGG5dXcZjLqv1STaGnH>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |
From: Noah C. <noa...@gm...> - 2020-05-05 14:08:07
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User's Meeting hosted by the Tripal Advisory Committee (TAC). All are welcome to attend. The meeting starts approximately one hour from the send time of this email and can be reached at https://tennessee.zoom.us/j/644881541. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link. <https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users%27+Meeting&iso=20200505T11&p1=843&ah=1&am=30> Tuesday's meeting will contain a message from the PMC regarding Tripal 4 development, the update to Tripal v3.3, a few words about the upcoming Tripal White Paper, and a demo of the Tripal Contact Profile and Colleagues Directory. The agenda can be accessed at this link <https://docs.google.com/document/d/1Sco--GsIiCXjnKp4L4iT7cuh4bS8tOVH3SCsFKd_t2A/edit?usp=sharing>; if you have any additional items you'd like to announce or discuss, please add to the google doc. Please direct any additional questions to noa...@gm.... Best, Noah Caldwell |
From: Noah C. <noa...@gm...> - 2020-05-01 21:16:26
|
Dear Tripal Community, As per our monthly schedule, the first Tuesday of each month is reserved for a User's Meeting hosted by the Tripal Advisory Committee (TAC). All are welcome to attend. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link: https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users%27+Meeting&iso=20200505T11&p1=843&ah=1&am=30 Tuesday's meeting will contain a message from the PMC regarding Tripal 4 development, the update to Tripal v3.3, a few words about the upcoming Tripal White Paper, and a demo of the Tripal Contact Profile and Colleagues Directory. The agenda can be accessed at the link below; if you have any additional items you'd like to announce or discuss, please add to the google doc. https://docs.google.com/document/d/1Sco--GsIiCXjnKp4L4iT7cuh4bS8tOVH3SCsFKd_t2A/edit?usp=sharing Please direct any additional questions to noa...@gm.... Best, Noah Caldwell |
From: Peter R. <pet...@uc...> - 2020-04-24 16:43:45
|
Hello all, The TreeGenes team will be hosting another bi-weekly Tripal Core Dev meeting this coming Monday, April 27th at 4pm, EST. This will be a virtual meeting and we are inviting anyone who is interested to come join us! We have an agenda, which can be found here <https://www.google.com/url?q=https://docs.google.com/document/d/1097d2qiMkLOIXjAXtQwyDNGLLEzVlvNO5kv4iw4tX5o/edit?usp%3Dsharing&sa=D&ust=1588177919877000&usg=AOvVaw1OOJ5F-nQ4-Imsi3vdJhxj>, where we keep track of the progress we make and add issues that we will be working on each meeting. Please, if you find an issue in the queue or a Tripal-related issue of your own that you would like to talk about or work on with the group, post it in the agenda for the upcoming meeting! The agenda also has a link to the zoom we will be using. We hope you can join us! Best, Peter Richter |