gmod-tripal — Announcements and questions about Tripal.

[Gmod-tripal] Reminder: Tripal Community Meeting June 7th

[Ficklin, S. P. <ste...@ws...>]

Dear Tripal Community,

As a reminder, we will have our monthly Tripal Community meeting on June 7th at 15:00 UTC.   You can find the exact time in your area here,  https://bit.ly/3PBeioC.   Everyone is welcome to attend including site administrators, developers and project PIs. The goal of these monthly meetings is to share information about important activities occurring in the community.

This Tuesday we will have a presentation from Lilia Mesina providing a demo on deploying Tripal 3 on the Google Cloud Platform! Please note that the Zoom link has changed.

https://uconn-edu.zoom.us/j/7301904581?pwd=d0VoNkJ2VEdFZzFzZ2RtOWkzSHBRdz09

This will be our last meeting prior to the summer break.  Meetings will return in September.

Hope to see you there!

--
Stephen P. Ficklin, Ph.D.
Associate Professor
Computational Biology and Bioinformatics
Department of Horticulture
Washington State University
403A Plant Sciences Bldg.
Pullman, WA 99164-6414
Office: (509) 335-4295
http://ficklinlab.cahnrs.wsu.edu

[Gmod-tripal] Tripal User's Meeting - May 2022

[Buehler, S. <sea...@uc...>]

Dear Tripal Community

The monthly Tripal User's Meeting is today, the first Tuesday of the month. It will be taking place at 11am EST, and the exact time can be found for your area here.<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting+2022/05/03&iso=20220503T11&p1=179&ah=1>

Here is the meeting agenda.<https://docs.google.com/document/d/1cypadoSXyZtWWMZ-UdC2w5XskntRYzzOvU8GPgCPVCY/edit#>

Detailed info for joining the event can be found below.

Join Zoom Meeting
https://uconn-edu.zoom.us/j/7301904581?pwd=d0VoNkJ2VEdFZzFzZ2RtOWkzSHBRdz09
Meeting ID: 730 190 4581
Passcode: 724126
One tap mobile
+13126266799,,7301904581#,,,,*724126# US (Chicago)
+19292056099,,7301904581#,,,,*724126# US (New York)
Dial by your location
    +1 312 626 6799 US (Chicago)
    +1 929 205 6099 US (New York)
    +1 301 715 8592 US (Washington DC)
    +1 346 248 7799 US (Houston)
    +1 669 900 6833 US (San Jose)
    +1 253 215 8782 US (Tacoma)
Meeting ID: 730 190 4581
Passcode: 724126



Gmod-tripal mailing list
Gmo...@li...<mailto:Gmo...@li...>
https://lists.sourceforge.net/lists/listinfo/gmod-tripal

[Gmod-tripal] Announcing BOSC 2022, the 23rd Bioinformatics Open Source Conference

[Scott C. <sc...@sc...>]

BOSC 2022 dates: July 13-14, as part of ISMB 2022

Location: Madison, WI, USA, and virtual

Website: <https://www.open-bio.org/wiki/BOSC_2019>
https://www.open-bio.org/events/bosc/

BOSC announcements mailing list:
<http://lists.open-bio.org/mailman/listinfo/bosc-announce>
https://groups.google.com/forum/#!forum/bosc-announce

Slack channel:
https://join.slack.com/t/obf-bosc/shared_invite/zt-n5ur1gsj-z2C~69_4lYTFPg5tbWA8Ew


Twitter: @OBF_BOSC <https://twitter.com/OBF_BOSC>, #BOSC2022

Key Dates

   -

   April 21, 2022: Deadline for submitting talk/poster abstracts
   <https://www.open-bio.org/events/bosc-2022/submit/>
   -

   May 12: Talk/poster acceptance notifications
   -

   May 19: Late poster (and Late-Breaking Lightning Talk) submission
   deadline
   -

   May 26: Late poster / LBLT acceptance notifications
   -

   July 13-14: BOSC 2022 <https://www.open-bio.org/events/bosc-2022/>
   -

   July 15-16: CollaborationFest (CoFest)


About BOSC

The Bioinformatics Open Source Conference promotes and facilitates the open
source development of bioinformatics tools and open science. Since 2000,
BOSC has provided a forum for developers and users to interact and share
research results and ideas in open source bioinformatics and open science.
BOSC’s broad spectrum of topics includes practical techniques for solving
bioinformatics problems; software development practices; standards and
ontologies; approaches that promote open science and sharing of data,
results and software; and ways to grow open source communities while
promoting diversity within them.
As usual, BOSC will include keynote talks, longer and shorter (lightning)
talks from submitted abstracts, posters, Birds of a Feather, and more!

New this year: Joint session with Bio-Ontologies
<https://www.open-bio.org/2022/03/03/bosc-and-bio-ontologies-joint-session/>
!
We are excited to announce that BOSC and Bio-Ontologies
<https://www.bio-ontologies.org.uk/ismb-annual-meeting> will join forces
for part of a day at ISMB 2022. The joint session will feature keynote
speaker Melissa Haendel as well as talks chosen from abstracts submitted to
BOSC or Bio-Ontologies.

Keynote Speakers <https://open-bio.org/events/bosc-2022/bosc-2022-keynotes>

Melissa Haendel is the Chief Research Informatics Officer at University of
Colorado Anschutz Medical Campus, and Director of the Center for Data to
Health (CD2H). With expertise in molecular genetics and developmental
biology as well as translational informatics, Dr. Haendel focuses on open
science and data integration to improve rare-disease diagnosis and
mechanism discovery. She is a leader in ontologies and standards for data
sharing.

Lior Pachter is the Bren professor of computational biology at Caltech. He
is a Fellow of the International Society of Computational Biology
<https://www.iscb.org/iscb-fellows> and has been awarded a National Science
Foundation CAREER award, a Sloan Research Fellowship His research interests
span the mathematical and biological sciences, including algorithms,
combinatorics, comparative genomics, algebraic statistics, molecular
biology and evolution. Dr. Pachter is known as a vociferous advocate of
open and accountable science.

A third keynote speaker will be announced soon!

Abstract submission

We encourage you to submit abstracts
<https://www.open-bio.org/events/bosc-2022/submit/> (due April 21 – sorry,
no extensions) on any topic relevant to open source bioinformatics or open
science. After review, some abstracts will be selected for lightning talks,
longer talks, or posters. Abstracts that are not chosen for talks will
automatically be considered for posters.

Abstract submission will be via ISMB’s EasyChair. Note that ISMB/ECCB
requires a short (200-word) text-only abstract for all submissions (talk or
poster), plus a “long abstract” (PDF, 2 pages max) if you want to be
considered for a talk. A second, later round of submissions will end May
19. Abstracts submitted in the late round will be considered only for
posters and a limited number of “late-breaking lightning talk” slots; they
are not eligible for longer talks.

Registration fee assistance

We realize that the cost of ISMB may be prohibitive for some. If you are
submitting an abstract to BOSC and would have difficulty covering the cost
of registration, you can request a registration fee waiver right on the
abstract submission form (which will not be seen by reviewers). Those who
are not submitting abstracts can apply for an OBF Event Fellowship
<https://www.open-bio.org/event-awards/> (deadline April 1, 2022).

BOSC topics include (but are not limited to):

   -

   Ontologies: Open Source Tools and Approaches (new this year – joint
   session with Bio-Ontologies COSI <http://www.bio-ontologies.org.uk/>)
   -

   Open Science and Reproducible Research
   -

   Open Biomedical Data
   -

   Citizen/Participatory Science
   -

   Standards and Interoperability
   -

   Data Science
   -

   Workflows
   -

   Open Approaches to Translational Bioinformatics
   -

   Open Science for Global Health
   -

   Developer Tools and Libraries
   -

   Inclusion, Outreach and Training
   -

   Bioinformatics Open Source Project Reports (about new or existing
   projects)
   -

   Open and interoperable ontologies (joint session with Bio-Ontologies
   <https://www.open-bio.org/2022/03/03/bosc-and-bio-ontologies-joint-session/>
   )


We look forward to reading your abstract and seeing you (in person or
virtually) at BOSC 2022!

Sincerely,

BOSC 2022 Organizing Committee: Nomi Harris, Karsten Hokamp, Hervé Ménager,
Monica Munoz-Torres, Deepak Unni, Nicole Vasilevsky, Jason Williams


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                                  scott
at scottcain dot net
GMOD Project Manager (http://gmod.org/)
216-392-3087
WormBase Developer (http://wormbase.org/)
Alliance of Genome Resources Group Leader (http://alliancegenome.org/)
VirusSeq Project Manager (https://virusseq-dataportal.ca/)

[Gmod-tripal] Tripal Users Meeting (March 1st).

[Ficklin, S. P. <ste...@ws...>]

Deat Tripal Community,

A reminder that our Tripal User's Meeting is tomorrow, Monday March 1st.  Monica Poelchau of the USDA will be presenting her experience designing and collecting measurements of site impact for i5K.  We think it will useful for others who may be interested in evaluating their own sites. The meeting will begin  at 8am Pacific / 10 am Regina / 11 am Eastern, 5pm European Central and 12pm China Standard.  Here are some important links:

  *   Quick Zoom link:  https://wsu.zoom.us/j/93869253343?pwd=ak9rdjRJdGVOenpXbngwaklRT2EvUT09

  *   Agenda Document with full Zoom Connection details:  https://docs.google.com/document/d/1cypadoSXyZtWWMZ-UdC2w5XskntRYzzOvU8GPgCPVCY/edit#heading=h.akb6m070kfzb

  *   Use this link to find the exact time in your area:  https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+User%27s+Meeting&iso=20220301T08&p1=%3A&ah=1

Please note, you must have a Zoom login to connect to the meeting. This can be an account with Zoom itself or one via your instituation.

See you there!

Stephen

[Gmod-tripal] Tripal v3.8 released

[Ficklin, S. P. <ste...@ws...>]

The Tripal Project Management Committee (PMC) has just released Tripal v3.8.  You can upgrade using the common approach for upgrading any Drupal modules. For example, on the command-line:

     drush pm-update tripal

The following changes are present in this release:


  *   Addition of a new API function for fully writing out infraspecific ranks of species.
  *   Various typos corrected.
  *   Fixes for PHP 7.4 compatibility.
  *   Fixes for improved web accessibility compliance.
  *   Fixes to the relationship field verb parsing.
  *   Fix for PubMed dates when importing publications.
  *   Fixes to the EBI Ontology Lookup in the OBO loader.

Special thanks to Doug Senalik and Sofia Robb for their contributions!

[Gmod-tripal] 2022 AgBioData Community Workshop

[Annarita M. <ama...@ar...>]

Dear Tripal community members,

I am Annarita Marrano, the program coordinator of AgBioData
<https://www.agbiodata.org/>.

AgBioData is a consortium of agricultural biological databases and
associated resources working together to ensure standards and best
practices for the acquisition, display, and retrieval of genomic, genetic,
and breeding data.

We’d like to invite you to join the “2022 AgBioData Community Workshop:
Facilitating crosstalk and network building across Working Groups” on March
15–17 (7-9 AM PT).

Anyone who uses, generates or manages agricultural biological data is
encouraged to attend. Hearing about the issues that you encounter when
searching for, accessing, and reusing data in your research is very
important for developing standards and best practices for FAIR data.
Even if you can’t make it all three days, we hope that you can participate.

As part of our NSF RCN grant <https://www.agbiodata.org/node/472>, we
currently have nine working groups (WGs) focusing on different aspects of
data sharing and management in agriculture (more information about the WGs
here <https://www.agbiodata.org/all-working-groups>). The goals of this
community workshop are:


   -

   providing a forum for the individual WGs to communicate what they are
   working on;

   -

   gathering detailed, impactful community feedback on specific questions
   that the WGs have about data curation, archiving, and management in
   agriculture.



Each day will start with short presentations from selected working groups,
followed by breakout sessions, where WG and non-WG members can meet and
discuss relevant topics, and a brief reporting period at the end.



Register for our community workshop here
<https://us06web.zoom.us/meeting/register/tZYtduqqqjsrGdfRHdV8yKhUNHUQBbAeLIEm>and
for more information on the schedule visit our website
<https://www.agbiodata.org/node/475>.

Please email us with any questions.

Best regards,

Annarita

[Gmod-tripal] Reminder: No Tripal User's Meeting in Feburary

[Ficklin, S. P. <ste...@ws...>]

Just as a reminder, we will not have a Tripal User's meeting as normal on Tuesday Feb 1st because it had been reserved for an Advisory Committee Meeting which instead is being held at another time.   We will see everyone on Tuesday March 1st for our next User's Meeting.

Stephen

--
Stephen P. Ficklin, Ph.D.
Associate Professor
Computational Biology and Bioinformatics
Department of Horticulture
Washington State University
403A Plant Sciences Bldg.
Pullman, WA 99164-6414
Office: (509) 335-4295
http://ficklinlab.cahnrs.wsu.edu

[Gmod-tripal] New Chado Focus at Weekly Tripal Dev Meetings

[Ficklin, S. P. <ste...@ws...>]

Dear Tripal and GMOD Community,

Every Monday, Tripal developers meet via GatherTown,  similar to a mini codefest. Anyone is welcome.  Sometimes we have an agenda and sometimes we don't, but we get together to chat about code for anything Tripal related. Folks who want help with their Tripal sites are also welcome to drop in.

On the first Monday of every month, starting in February, we are going to focus on Chado issues that we have, including submitting and reviewing pull requests made to the Chado GitHub repository.  Members of the broader GMOD community are welcome to join us.

You can meet with us on GatherTown by joining the Tripal Slack workspace (https://tripal.info/join/slack) which has a #chado channel. On the Tripal Slack  you can request the GatherTown link.  Alternatively, email me directly and I will send the link to you.

If you would like to be involved in these discussions, please join us!

Stephen Ficklin
Tripal PMC Member

[Gmod-tripal] Tripal CodeFest Postponed

[Ficklin, S. P. <ste...@ws...>]

Dear Tripal Community,

This announcement has two items.

First, I regret to inform you that the Project Management Committee (in consultation with the Advisory Committee) has decided to postpone the Tripal Codefest (Hackathon) that was scheduled for next week.   We apologize for the postponement.  The Tripal 4 core developers needed a bit more time to finish up the Tripal Fields work and since that is a major component for two of the three working groups, we decided it would be better to postpone so that we can optimize our productivity.   So please watch for a message later this Spring to reschedule!

Stephen Ficklin
Tripal PMC Member

[Gmod-tripal] PAG 2022 Tripal Session Presented LIVE today via ZOOM at 4pm PST - join us!

[Wegrzyn, J. <jil...@uc...>]

Please join the Plant and Animal Genome 2022 - Tripal Session via ZOOM today at 4pm PST https://intlpag.org/2022/program/virtual-pag-xxix/450-virtual-xxix-01-08-22 (select the session to obtain the zoom link)

The specific talks are listed here: https://plan.core-apps.com/pag_2022/event/4768a701b1aeb98ca6785b1ca7a40b7f

I believe you should be able to login with: Username: PAGXXIX Password: PAGvirtual22!!

Jill L. Wegrzyn
Associate Professor

Department of Ecology and Evolutionary Biology
Institute for Systems Genomics: Computational Biology Core
University of Connecticut
67 N. Eagleville Road
Storrs CT 06269-3214

jil...@uc...<mailto:jil...@uc...>
+1 860-486-8742

Research: plantcompgenomics.com<http://plantcompgenomics.com/>
CBC Core: bioinformatics.uconn.edu<http://bioinformatics.uconn.edu/>
Office: Gant 419W / Lab: Gant 401W

[Gmod-tripal] Tripal Codefest

[Ficklin, S. P. <ste...@ws...>]

Thank you to those who have already registered and provided initial date suggestions and topics for the Tripal Codefest.  It now has now has specific dates (Jan 26th-27th) and a few topics! You can find more information on the events page here:  https://tripal.info/events/codefest_2022.

If you have not already registered, please do so. During registration, you will be asked to join one or more groups or if you would like to lead your own group you can specify the topic. Working solo on your own topic is also welcome!  You can register at https://forms.gle/wtNNTnkf1YEiZrq77.

[Gmod-tripal] Tripal Codefest 2022 Registration Open

[Ficklin, S. P. <ste...@ws...>]

Dear Tripal Community,

Registration for the Virtual Tripal CodeFest 2022 is now open!  All are welcome at this online, no cost event.  The event will occur for two days during the weeks of Jan 17-28th.  Official days will be determined from registrants' preference specified during registration.

For more details see the event webpage: https://tripal.info/events/codefest_2022

We hope to see everyone!

[Gmod-tripal] Tripal Users Meeting November 2

[Buehler, S. <sea...@uc...>]

Dear Tripal Community,

As per our monthly schedule, the first Tuesday of each month is reserved for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). The next such meeting is on October 5th. As this is a worldwide meeting, the exact time (11am EST) for the meeting in your area can be found at this link.<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+User's+Meeting&iso=20211102T11&p1=179&ah=1>

Here is the meeting agenda.<https://docs.google.com/document/d/1EGeMKV0NoHoeG9i1eEjeryBviMt8HXj4T4x8jyc0lf0/edit#>

Join Zoom Meeting:
https://uconn-edu.zoom.us/j/91056131841?pwd=VUx4ZFplYmNFMTVhcVNmM0xHUCtUZz09

Meeting ID: 910 5613 1841
Passcode: 845477
One tap mobile
+13017158592,,91056131841#,,,,*845477# US (Washington DC)
+13126266799,,91056131841#,,,,*845477# US (Chicago)

Dial by your location
        +1 301 715 8592 US (Washington DC)
        +1 312 626 6799 US (Chicago)
        +1 929 205 6099 US (New York)
        +1 253 215 8782 US (Tacoma)
        +1 346 248 7799 US (Houston)
        +1 669 900 6833 US (San Jose)
Meeting ID: 910 5613 1841
Passcode: 845477
Find your local number: https://uconn-edu.zoom.us/u/abi1iwK90Y

[Gmod-tripal] Tripal Users Meeting October 5th

[Noah C. <noa...@gm...>]

Dear Tripal Community,

As per our monthly schedule, the first Tuesday of each month is reserved
for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). The
next such meeting is on October 5th. As this is a worldwide meeting, the
exact time (11am EST) for the meeting in your area can be found at this
link.
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting+2021%2F10%2F05&iso=20211005T11&p1=843&ah=1&am=30>

Here is the meeting agenda.
<https://docs.google.com/document/d/1vb81kGHWkDlzFAzSVam4z2tlXtMrSOEPgOqs9au_E7Q/edit?usp=sharing>

Join from PC, Mac, Linux, iOS or Android:
https://tennessee.zoom.us/j/91657744272
Or iPhone one-tap (US Toll):  +13017158592,91657744272#  or
+13126266799,91657744272#
Or Telephone:
    +1 301 715 8592 (US Toll)
    Meeting ID: 916 5774 4272
    International numbers available: https://tennessee.zoom.us/u/aD2AHux35

Re: [Gmod-tripal] Attending PAG? Please reply

[Scott C. <sc...@sc...>]

I definitely will be there--it's just down the street :-)

Scott


On Fri, Sep 10, 2021 at 10:24 AM Meg Staton <me...@gm...> wrote:

> PAG is occurring as an in person meeting this coming January 8 -12, 2022.
> Tripal has its usual workshop slot reserved, but we need to assess if there
> is sufficient interest and attendance from the community to move forward
> with holding it.* If you are planning to go to PAG and would attend
> and/or present at the Tripal workshop, please email me back. *
>
> We will definitely be having an open for all, online codefest sometime in
> January no matter how the workshop with PAG works out.
>
> Discussion here or on slack welcome!
> Thanks all,
> Meg Staton
>
> --
> Margaret Staton
> Associate Professor
> Department of Entomology and Plant Pathology
> Office: 154 PBB
> Mail: 370 PBB, 2505 EJ Chapman Drive
> Knoxville, TN 37996-4560
> she/her/hers
>
> 864-506-4515 Mobile
> mst...@ut...
>
> *Advanced Out of Office Notice*
> *October 11-15, 2021*
>
>
>
> _______________________________________________
> Gmod-tripal mailing list
> Gmo...@li...
> https://lists.sourceforge.net/lists/listinfo/gmod-tripal
>


-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

[Gmod-tripal] Attending PAG? Please reply

[Meg S. <me...@gm...>]

PAG is occurring as an in person meeting this coming January 8 -12, 2022.
Tripal has its usual workshop slot reserved, but we need to assess if there
is sufficient interest and attendance from the community to move forward
with holding it.* If you are planning to go to PAG and would attend and/or
present at the Tripal workshop, please email me back. *

We will definitely be having an open for all, online codefest sometime in
January no matter how the workshop with PAG works out.

Discussion here or on slack welcome!
Thanks all,
Meg Staton

-- 
Margaret Staton
Associate Professor
Department of Entomology and Plant Pathology
Office: 154 PBB
Mail: 370 PBB, 2505 EJ Chapman Drive
Knoxville, TN 37996-4560
she/her/hers

864-506-4515 Mobile
mst...@ut...

*Advanced Out of Office Notice*
*October 11-15, 2021*

[Gmod-tripal] Tripal Users Meeting September 7th

[Noah C. <noa...@gm...>]

Dear Tripal Community,

After our summer break, we're happy to resume our monthly meeting schedule.
The first Tuesday of each month is reserved for a User’s Meeting hosted by
the Tripal Advisory Committee (TAC). The next such meeting is on September
7th. As this is a worldwide meeting, the exact time (11am EST) for the
meeting in your area can be found at this link.
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20210907T11&p1=843&ah=1&am=30>

The main content of this meeting will an introduction to the Tripal Network
Module. Here is the meeting agenda.
<https://docs.google.com/document/d/1ffafaKoFjBhHPKMwRxy53STAhM5OYn202IAEH9GhtE8/edit?usp=sharing>

Join from PC, Mac, Linux, iOS or Android:
https://tennessee.zoom.us/j/92466402567
<https://www.google.com/url?q=https://tennessee.zoom.us/j/92466402567&sa=D&source=calendar&usd=2&usg=AOvVaw0TwAkTwdH5hL342t96siXd>
Or iPhone one-tap (US Toll): +13017158592,92466402567#
Or Telephone: Dial: +1 301 715 8592 (US Toll)
International numbers available: https://tennessee.zoom.us/u/abMkdfitjg
<https://www.google.com/url?q=https://tennessee.zoom.us/u/abMkdfitjg&sa=D&source=calendar&usd=2&usg=AOvVaw11eS64W6V5mIFiBXxdBjbW>
Meeting ID: 924 6640 2567

[Gmod-tripal] Help us chart the future of agricultural data!

[Meg S. <me...@gm...>]

Dear Researchers, Breeders, Database Providers, Funders, Editors, Students,
Software Engineers, and other Scientists,

*Do you want easy access to better quality data?*  We are THRILLED to
announce that AgBioData (https://www.agbiodata.org/) has received a
three-year NSF RCN award to expand our community committed to improving
quality and access to agricultural data. New activities will include
organizing workshops, establishing new working groups, and developing FAIR
curriculum for scientists.  We are expanding the consortium and welcome new
members, especially students, post-docs, big-data scientists, funding
agency scientists and members of the scientific publishing community
interested in solving common FAIR data issues.

*We invite all of you to an important kickoff All-Hands Meeting on Sept 1st* at
10 am PDT (find your local time - https://bit.ly/389VeJA).  At this meeting
you will hear about our RCN objectives, the benefits of joining AgBioData,
and how YOU can make a difference in the biological data environment for
years to come. *Please pre-register* for this meeting at
https://iastate.zoom.us/meeting/register/tJcld-iqqD4vE9awJKcFGnmHwxtCNc_a7UJM

*We are also hiring a scientist to coordinate AgBioData activities*,
outreach and curriculum development.  Please help us publicize this
opportunity!  Applications should be submitted by August 31 to
https://phoenix-bioinformatics.hirehive.com/job/83452/scientific-program-coordinator-newark?source=TAIR
.

Thank you!

The AgBioData Steering Committee:
Monica Poelchau, Sook Jung, Ethy Cannon, Jacqueline Campbell, Lisa Harper,
Leonore Reiser, Marcela Tello-Ruiz, Laurel Cooper, Eva Hula, Meg Staton,
and Darwin Campbell

*About AgBioData:*  https://www.agbiodata.org
*AgBioData RCN*: https://www.nsf.gov/awardsearch/showAward?AWD_ID=2126334

-- 
Margaret Staton
Associate Professor
Department of Entomology and Plant Pathology
Office: 154 PBB
Mail: 370 PBB, 2505 EJ Chapman Drive
Knoxville, TN 37996-4560
she/her/hers

864-506-4515 Mobile
mst...@ut...

*Advanced Out of Office Notice*
*October 11-15, 2021*

[Gmod-tripal] Scientific Program Coordinator position for AgBioData Consortium

[Jung, S. <soo...@ws...>]

Hello,

A full time 3-year term Scientific Program Coordinator position for AgBioData Consortium is available.

Scientific Program Coordinator

Phoenix Bioinformatics and The AgBioData Consortium are seeking a Program Coordinator to support the activities of a recently funded three year NSF Research Coordination Network award (https://www.nsf.gov/awardsearch/showAward?AWD_ID=2126334&HistoricalAwards=false<https://urldefense.com/v3/__https:/www.nsf.gov/awardsearch/showAward?AWD_ID=2126334&HistoricalAwards=false__;!!JmPEgBY0HMszNaDT!-9PAHc9Z9RXOxe1acJRwsH69LiUjUShR0uJ2XFDOwYuaz1B63P-nTLaPqya_1nifBsNloZ8$>). The AgBioData RCN aims to accelerate research in agricultural science by increasing the accessibility and reuse of large- scale biological data. We will do this by creating a network of Genomic, Genetic and Breeding Databases, researchers, scholarly publishers, and funders to advance data capture, findability, access, interoperability, reusability, and sustainability. This is a unique opportunity for an individual seeking to advance into a variety of careers away from the bench such as teaching at primarily undergraduate institutions, biocuration, database project management or scholarly publishing.

The Program Coordinator will support the activities of the RCN and work collaboratively with the Steering Committee to ensure the timely completion of the RCN objectives.

The position reports to the AgBioData Steering Committee and the coordinator will be part of a diverse and skilled professional team at Phoenix Bioinformatics. This position is a full time, remote working position with collaborators across multiple US time zones so hours can be flexible.


View the job posting for further details : https://phoenix-bioinformatics.hirehive.com/job/83452/scientific-program-coordinator-newark<https://urldefense.com/v3/__https:/phoenix-bioinformatics.hirehive.com/job/83452/scientific-program-coordinator-newark__;!!JmPEgBY0HMszNaDT!-9PAHc9Z9RXOxe1acJRwsH69LiUjUShR0uJ2XFDOwYuaz1B63P-nTLaPqya_1nifpZ9bfq0$>

Best,

Sook


Sook Jung, Ph.D.
Assistant Research Professor of Bioinformatics
Department of Horticulture
Washington State University

[Gmod-tripal] JBrowse/GMOD Birds of a Feather at BOSC

[Scott C. <sc...@sc...>]

Hi,

Here's a reminder that "today" (that is, tomorrow morning for me) there is
a Birds of a Feather meeting to discuss GMOD topics at ISMB/BOSC, including
JBrowse but other GMOD topics as well. The BoF starts at 15:20 UTC (7:20
PDT, 10:20 EDT) on July 28. If you are attending ISMB, please feel free to
drop in and chat about good stuff you're doing or want to do:

https://ismbeccb2021.showcare.io/sessions/28-3-bof/

Scott

-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

[Gmod-tripal] GMOD/JBrowse Birds of a Feather at BOSC

[Scott C. <sc...@sc...>]

Hello,

If you are attending BOSC or any other ISCM meeting next week, please feel
free to come to the GMOD/JBrowse Birds of a Feather on Wednesday, July 28
from 15:20 to 16:20 UTC (yes, that is 7:20 AM west coast US time). Several
GMOD folks will be there; you can talk about new developments with JBrowse
2 or discuss any of several other GMOD components.

https://www.iscb.org/ismbeccb2021-program/bof#bof4

The meeting will take place in the Research Exchange Forum, which hopefully
will make sense when attending the meeting!  :-)

See you all next week!

Scott



-- 
------------------------------------------------------------------------
Scott Cain, Ph. D.                                   scott at scottcain dot
net
GMOD Coordinator (http://gmod.org/)                     216-392-3087
Ontario Institute for Cancer Research

[Gmod-tripal] Tripal Users Meetings Cancelled for June/July

[Noah C. <noa...@gm...>]

Dear Tripal Community,

Unfortunately, we will not be holding the Tripal User's Meeting for this
month due to an unforeseen scheduling issue.  Also, similar to years past,
due to the busy holiday and conference schedule July's meeting will be
cancelled. We look forward to meeting with everyone again in August.  Until
then, please consider attending our weekly CoFest meeting via GatherTown
each week on Mondays.  You'll find connection information on
the #announcements channel of our Slack repository.

Have a great summer!

[Gmod-tripal] Tripal Advisory Committee meeting May 4th

[Noah C. <noa...@gm...>]

Dear Tripal Community,

As per our monthly schedule, the first Tuesday of each month is reserved
for a User’s Meeting hosted by the Tripal Advisory Committee (TAC), with
every third meeting being a Tripal Advisory Committee Meeting. The meeting
scheduled for next Tuesday, May 4th, is a TAC Meeting, but all are welcome
to attend. As this is a worldwide meeting, the exact time (11am EST) for
the meeting in your area can be found at this link.
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Advisory+Committee+Meeting&iso=20210504T11&p1=843&ah=1&am=30>

Tuesday’s meeting will discuss an update on the Tripal White Paper, a new
grant to help support Tripal that Stephen is spearheading, a discussion on
involvement, and BOSC abstracts. The agenda can be found here.
<https://docs.google.com/document/d/1uSlBcsXuA2O9oCZ0IZl_nY07gypsLtuiY6egXWTes_E/edit?usp=sharing>

Join from PC, Mac, Linux, iOS or Android:
https://tennessee.zoom.us/j/93449257170
Or iPhone one-tap (US Toll):  +13017158592,93449257170#  or
+13126266799,93449257170#
Or Telephone:
    +1 301 715 8592 (US Toll)
    +1 312 626 6799 (US Toll)
    Meeting ID: 934 4925 7170
    International numbers available: https://tennessee.zoom.us/u/aBfNRdaOE

[Gmod-tripal] Tripal Users Meeting April 6th

[Noah C. <noa...@gm...>]

Dear Tripal Community,

As per our monthly schedule, the first Tuesday of each month is reserved
for a User’s Meeting hosted by the Tripal Advisory Committee (TAC). The
next such meeting is on April 6th. As this is a worldwide meeting, the
exact time (11am EST) for the meeting in your area can be found at this
link.
<https://www.timeanddate.com/worldclock/fixedtime.html?msg=Tripal+Users+Meeting&iso=20210406T11&p1=843&ah=1&am=30>

The main content of this meeting will be an introduction to the Main Lab
Breeding Module by Taein Lee. Here is the meeting agenda.
<https://docs.google.com/document/d/1HbYILIJSpgajoy-qUJtqbFVJTVYWYvF_E4ItQ3c-WI8/edit?usp=sharing>

Join from PC, Mac, Linux, iOS or Android:
https://tennessee.zoom.us/j/98303283849
Or iPhone one-tap (US Toll):  +13017158592,98303283849#  or
+13126266799,98303283849#
Or Telephone:
    +1 301 715 8592 (US Toll)
    Meeting ID: 983 0328 3849
    International numbers available: https://tennessee.zoom.us/u/aeeL7XZe82

[Gmod-tripal] Tripal Users Meeting March 2nd 2021

[Noah C. <noa...@gm...>]

Reminder: tomorrow, March 2nd is our next Tripal Users Meeting. As this is
a worldwide meeting, the exact time (11am EST) for the meeting in your
area can be found at this link.

The main content of this meeting will be a demo of the Tripal File module,
and discussion of the module afterwards. Here is the meeting agenda.

Join from PC, Mac, Linux, iOS or Android:
https://tennessee.zoom.us/j/93213259072
Or iPhone one-tap (US
Toll): +16468769923,93213259072# or +13017158592,93213259072#
Or Telephone:
  +1 646 876 9923 (US Toll)
  Meeting ID: 932 1325 9072
  International numbers available: https://tennessee.zoom.us/u/abRz2NZKEs