Open Source Ecosystem Sciences Software
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Ecosystem Sciences Software
View 163 business solutionsBrowse free open source Ecosystem Sciences software and projects below. Use the toggles on the left to filter open source Ecosystem Sciences software by OS, license, language, programming language, and project status.
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ToxTrac
Free Animal Tracking Software
ToxTrac is a free Windows program optimized for tracking animals. It uses an advanced tracking algorithm and includes Preprocessing, Background subtraction, Thresholding, Post-processing, and Filters. It is robust; very fast; and can handle one or several animals in one or several environments. The program provides useful statistics as output. ToxTrac can be used for fish, insects, rodents, etc. If used, please cite: Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., Andersson, P. L. and Andersson, M. (2018). ToxTrac: a fast and robust software for tracking organisms. Methods in Ecology and Evolution. 9(3):460–464 Rodriguez, A., Zhang, H., Klaminder, J., Brodin, T., and Andersson, M. (2017). ToxId: an algorithm to track the identity of multiple animals. Scientific Reports. 7(1):14774. Contact and Support: Alvaro Rodriguez (Main Developer), a.tajes@udc.es Magnus Andersson, magnus.andersson@umu.se -
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openLISEM
A spatial runoff, soil erosion and flooding model
An nopensource runoff, erosion and flood model openLISEM. There are two branches: - the classic openLISEM that you can find here: https://github.com/vjetten/openlisem/, please contact Victor Jetten (v.g.jetten@utwente.nl) for details. - the multihazard version of LISEM on this page, for details contact Bastian van den Bout (b.vandenbout@utwente.nl). This software is made available under the licence GPL v3. -
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openLCA
professional open source software for LCA
Software for sustainability assessment, highly modular; initially focused on Life Cycle Assessments. -
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An easy to use application to design your kitchen garden or your house farm. Helps you plan your plants ( vegetables, fruit trees, herbs, flowers ) so that it respects the rules of crop rotation and companion planting. Based on square foot gardening. Requires Java 8.
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MacPHREEQC
macOS version of the USGS geochemical modeling code PHREEQC
The macOS version of PHREEQC, a program developed by the U.S. Geological Survey for speciation, batch-reaction, one-dimensional transport, and inverse geochemical calculations -
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The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.
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Niche Analyst (NicheA) was developed based on the BAM framework which allows users to create virtual spaces and virtual species, and to analyze ecological niches in both multivariate environmental and geographic spaces, linking views of the niche in the two spaces. The unique functionality in NicheA, not available in other software programs, is estimating Grinnellian niches of species based on environmental variables and occurrence records, but with a clear focus on fundamental ecological niches. NicheA can display ecological niches; calculate their shape, density, location, and other attributes; and quantify similarity among multiple niches.
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This software enable cannabis grower to manage and retrieve statistics about culture, tools included have the goal to help growing indoor cannabis.
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The Life Cycle Assessment Spreadsheet allows you to calculate carbon footprints and other environmental impacts for given product systems. Use requires basic skills in LCA and matrix algebra, but rewards effort with professional analytical tools.
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TRiDaS is a universal data exchange standard for the dendrochronology community. This project contains the data standard itself as well as libraries and tools useful for reading, writing and converting dendro data files.
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Binary2Data
Export data from "binary" to "data" .csv from TMS compatible loggers
A script to export / convert data from a "binary" .csv to a "data" .csv file for TOMST TMS model 91, 92 and 94 compatible loggers. If some data has been not correctly exported using the TOMST Lolly software, this script will be able to recover all the data saved in the "binary" .csv file and save it as a "data" .csv file. Simply select all the "binary" files you want to export the information from and the data will be exported to corresponding "data" .csv files. Tested on a handful "binary" .csv files from 91, 92 and 94-type TMS loggers. -
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Luscinia is a program for archiving and analyzing field sound recordings (especially of animals). It incorporates an interface to a database, spectrogram measurement algorithms, sound comparison algorithms, and statistical analysis.
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PAMGuide
An analysis tool in MATLAB and R for acoustic habitat characterisation
PAMGuide is acoustic analysis software for the characterisation of the acoustic environment from sound recordings. PAMGuide can be used to produce calibrated spectrograms and statistical analyses of sound levels, and is provided in both MATLAB and R. A Tutorial on getting started with PAMGuide can be downloaded here: http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12330/suppinfo PAMGuide was published as supplementary material to the following Open Access journal article: Merchant, N.D., Fristrup, K.M., Johnson, M.P., Tyack, P.L., Witt, M.J., Blondel, P., Parks, S.E. (2015). Measuring acoustic habitats. Methods in Ecology and Evolution. http://dx.doi.org/10.1111/2041-210X.12330 -
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SeaBreeze
Open-source cross-platform spectrometer device driver
SeaBreeze is a device driver library that provides an interface to select Ocean Optics spectrometers. It is written in C/C++ and builds and runs on Windows (XP/7/8), MacOSX, and Linux (x86/x64/ARM). -
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Cultivation is a game about the interactions within a gardening community. The resources needed for genetic propagation are tight, and relations can become tense. Cultivation explores self-interest, the common good, conflict, and compromise.
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GenoCline
GenoCline is a free Java software for genetic cline analysis
Identification of clines from allele frequency or genome-wide databases. Angular transformation. Sigmoid function. Parameterization of a cline: orientation, Pearson’s product-moment correlation coefficient, linear and sigmoid regression and coefficient of determination. Graphical representation of the cline. Confidence limits. Spatial autocorrelation. Moran's index. Isolation by distance. Exponential regression. Correlation Fst/Distance. Centroid method. Cline's expected vs. predicted heterozygosity. MDS. Sammon projection. Geographical distances. Fst distances. Export data to Arlequin, Phylip, Past and Poptree. User-friendly input data. -
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MetaMaster is a Java-based desktop application for defining, managing and manipulating metadata associated with a collection of data files or datasets (both locally and on the network) which are bundled together into "data packages". ANDS-funded
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incertR
Incertitudes de Mesures de la Qualité de l'Air (Gaz et Particules)
Ensemble de fonctions permettant, à partir d'une base de données contenant les paramètres analyseurs, de réaliser les calculs d'incertitudes sur les mesures automatiques agrégrées de qualité de l'air. -
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Biogenesis Color Mod
Mod for evolution simulation and artificial life program Biogenesis
You can download the Color Mod at the Biogenesis main site too (included in the main download now). You also find the sourcecode there. If you want to post a review, remember that this is only a modification, so comment on my changes, not on the simulation. Original project by Joan Queralt Molina: https://sourceforge.net/projects/biogenesis/ Includes Tyler Colemans "Features Mod": https://sourceforge.net/projects/biogenesisfeatu/ Biogenesis discussion forum: https://sourceforge.net/p/biogenesis/discussion/ Biogenesis runs faster (at least for myself) if you open a Google Chrome window (don´t know why :D) -
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A cross-platform Java program to turn a simple Geiger counter into the equivalent of a state-of-the art digital model, plus some – using your laptop computer.
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MCC-LIDAR
Multiscale Curvature Classification for LIDAR Data
MCC-LIDAR is a C++ application for processing LiDAR data in forested environments. It classifies data points as ground or non-ground using the Multiscale Curvature Classification algorithm. -
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Biosphere3D
Interactive landscape rendering based on a virtual globe.
Biosphere3D targets interactive landscape rendering based on a virtual globe. It supports DEM, satellite and aerial images, 3D models (Collada), 3D plant models, and Shapefiles. Biosphere3D was initially developed by the landscape visualization group of the Zuse Institute Berlin by Malte Clasen and is now developed further by Lenné3D GmbH. For more information about the used concepts have a look at the thesis of Malte Clasen: Towards Interactive Landscape Visualization Doctoral Thesis published 2011 via Technische Universität Berlin https://doi.org/10.14279/depositonce-3005 -
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Black Spot Leaf Area Calculator
Automated leaf area estimation from scanned leaf images
Black Spot is a free stand alone software and method to estimate leaf area from images of leaves captured using standard flatbed scanners. This easy to use software allows the user to batch process a large number of samples from multiple species with minimal user input. -
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CDPOPgui
GUI Frontend for CDPOP
CDPOPgui is a GUI Frontend for CDPOP What is CDPOP? CDPOP (Cost Distance POPulations) is a spatially-explicit simulator of gene-flow in complex landscapes to explain observed population responses and provide a foundation for landscape genetics. The program implements individual-based population modeling with Mendelian inheritance on a resistant landscape. Simulation begins with an initial homogeneous population and followed by divergence through time as functions of individual based movement, breeding and dispersal on a continuous cost surface. Acknowledgements Allen Warren developed the GUI.The citation for this program is: Landguth EL, Cushman SA (2010) CDPOP: A spatially-explicit cost distance population genetics program. Mol. Ecol. Res. 10, 156-161. Updates to the software, including natural selection, can be referenced with Landguth EL, Cushman SA, Johnson NA (2012) Simulating natural selection in landscape genetics. Molecular Ecology Resources, 12, 363-368. -
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DLESE (Digital Library for Earth System Education) is a community-supported digital library dedicated to the collection, enhancement, and distribution of materials that facilitate learning about the Earth. Sponsored by the US National Science Foundation.
