Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[379] trunk/src/war (Page 4)
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From: <p_a...@us...> - 2009-05-01 09:41:40
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Revision: 379
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=379&view=rev
Author: p_ansell
Date: 2009-05-01 09:41:31 +0000 (Fri, 01 May 2009)
Log Message:
-----------
upgrade urlrewrite in attempt to fix issue with something consistently unencoding slashes before they get to the server and hence making HTTP GET calls to pipes completely unfunctional if they have to contain urlencoded URL's
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/bio2rdfpipes.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/lib/urlrewrite-3.2.0.jar
Removed Paths:
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trunk/src/war/WEB-INF/lib/urlrewrite-3.1.0.jar
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From: <p_a...@us...> - 2009-05-02 08:36:28
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Revision: 380
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=380&view=rev
Author: p_ansell
Date: 2009-05-02 08:36:27 +0000 (Sat, 02 May 2009)
Log Message:
-----------
fix URL encoding issue by requiring double urlencoded parameters, ie, % becomes %25, which doesn't trigger the buggy Tomcat or Apache urlunencoding issues
Modified Paths:
--------------
trunk/src/war/WEB-INF/lib/urlrewrite-3.2.0.jar
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/WEB-INF/web-production-template.xml
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2009-05-02 08:55:59
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Revision: 381
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=381&view=rev
Author: p_ansell
Date: 2009-05-02 08:55:37 +0000 (Sat, 02 May 2009)
Log Message:
-----------
add commonuris operation
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2009-05-05 03:15:29
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Revision: 382
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=382&view=rev
Author: p_ansell
Date: 2009-05-05 03:15:21 +0000 (Tue, 05 May 2009)
Log Message:
-----------
multifetch enhancements, add Settings.PREFERRED_CONTENT_TYPE, and fix /demo that was broken when the urlrewrite library upgrade occured
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-05 03:48:44
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Revision: 383
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=383&view=rev
Author: p_ansell
Date: 2009-05-05 03:48:21 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add content negotiation libraries from pubby http://dbpedia.svn.sourceforge.net/viewvc/dbpedia/pubby/src/de/fuberlin/wiwiss/pubby/negotiation/
Added Paths:
-----------
trunk/src/war/WEB-INF/src/de/
trunk/src/war/WEB-INF/src/de/fuberlin/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/error-tomcat-encoded-slashes.jsp
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From: <p_a...@us...> - 2009-05-05 06:32:41
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Revision: 384
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=384&view=rev
Author: p_ansell
Date: 2009-05-05 06:32:32 +0000 (Tue, 05 May 2009)
Log Message:
-----------
add some content negotiation in, not sure how well it works so far but it still requests
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp
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From: <p_a...@us...> - 2009-05-06 23:53:00
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Revision: 390
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=390&view=rev
Author: p_ansell
Date: 2009-05-06 23:52:50 +0000 (Wed, 06 May 2009)
Log Message:
-----------
add content negotiation to the fetcher and add text/rdf+n3 as an alternative to application/rdf+xml to atlas2rdf.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/ContentTypeNegotiator.java
trunk/src/war/WEB-INF/src/de/fuberlin/wiwiss/pubby/negotiation/MediaRangeSpec.java
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-07 00:39:50
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Revision: 392
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=392&view=rev
Author: p_ansell
Date: 2009-05-07 00:39:41 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix bug caused by content type containing encoding value
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
trunk/src/war/atlas2rdf.jsp
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-07 00:50:25
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Revision: 393
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=393&view=rev
Author: p_ansell
Date: 2009-05-07 00:50:13 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix multifetch to use content negotiation too
Modified Paths:
--------------
trunk/src/war/atlas2rdf.jsp
trunk/src/war/multifetch.jsp
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From: <p_a...@us...> - 2009-05-07 02:22:41
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Revision: 395
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=395&view=rev
Author: p_ansell
Date: 2009-05-07 01:44:47 +0000 (Thu, 07 May 2009)
Log Message:
-----------
add content negotiation to debug-configuration.jsp
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-05-07 06:27:37
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Revision: 403
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=403&view=rev
Author: p_ansell
Date: 2009-05-07 06:27:36 +0000 (Thu, 07 May 2009)
Log Message:
-----------
fix searchns/uniprot/searchterm so it doesn't use the live rdfising form
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp
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From: <p_a...@us...> - 2009-05-08 03:02:28
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Revision: 410
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=410&view=rev
Author: p_ansell
Date: 2009-05-08 03:02:15 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add more providers in, and cleanup some pages
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/blacklisterror.jsp
trunk/src/war/demo.rdf
trunk/src/war/errorstats.jsp
trunk/src/war/index.html
trunk/src/war/mquter-index.html
trunk/src/war/namespaceproviders.jsp
trunk/src/war/quebec-index.html
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-08 03:20:30
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Revision: 411
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=411&view=rev
Author: p_ansell
Date: 2009-05-08 03:20:21 +0000 (Fri, 08 May 2009)
Log Message:
-----------
add unknown query response with type error
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-17 04:18:36
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Revision: 438
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=438&view=rev
Author: p_ansell
Date: 2009-05-17 04:18:28 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add capability to remove trivial ?myUri owl:sameAs ?myUri triples that are automagically inserted by the static RDF input code, but are not really advantageous to users because they are trivial
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-17 05:19:02
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Revision: 443
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=443&view=rev
Author: p_ansell
Date: 2009-05-17 05:18:54 +0000 (Sun, 17 May 2009)
Log Message:
-----------
add status code changes depending on whether the query or the namespace were unrecognised
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-18 11:43:23
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Revision: 458
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=458&view=rev
Author: p_ansell
Date: 2009-05-18 11:43:22 +0000 (Mon, 18 May 2009)
Log Message:
-----------
attempt to solve the UTF-8 encoding issue that appears only to be applicable to application/rdf+xml and only on atlas2rdf.jsp, as error-sesame-output.jsp doesn't display the issue
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/atlas2rdf.jsp
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-19 02:13:10
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Revision: 460
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=460&view=rev
Author: p_ansell
Date: 2009-05-19 02:13:04 +0000 (Tue, 19 May 2009)
Log Message:
-----------
add new namespace provider for genomereviews
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/error-sesame-output.jsp
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From: <p_a...@us...> - 2009-05-20 00:54:29
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Revision: 464
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=464&view=rev
Author: p_ansell
Date: 2009-05-20 00:54:20 +0000 (Wed, 20 May 2009)
Log Message:
-----------
add blocks to robots.txt and new pubmedcentral service to query types
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2009-05-22 09:13:03
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Revision: 469
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=469&view=rev
Author: p_ansell
Date: 2009-05-22 09:12:50 +0000 (Fri, 22 May 2009)
Log Message:
-----------
add some extra links and reverse construct providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/demo.rdf
trunk/src/war/index.html
trunk/src/war/mquter-index.html
trunk/src/war/quebec-index.html
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From: <p_a...@us...> - 2009-05-23 08:04:19
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Revision: 479
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=479&view=rev
Author: p_ansell
Date: 2009-05-23 08:04:11 +0000 (Sat, 23 May 2009)
Log Message:
-----------
first proof of concept for getting configuration from RDF with sesame and selecting the provider URI's from the configuration
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-05-26 04:05:17
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Revision: 488
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=488&view=rev
Author: p_ansell
Date: 2009-05-26 04:05:10 +0000 (Tue, 26 May 2009)
Log Message:
-----------
more progress including configuration and rdf import for providerconfiguration partial success so far
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2009-06-01 02:47:32
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Revision: 497
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=497&view=rev
Author: p_ansell
Date: 2009-06-01 02:47:31 +0000 (Mon, 01 Jun 2009)
Log Message:
-----------
fix some searchns output pages to the current URI structure and add mquter linkedct mirror information on
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/jsp-bio2rdf/ncbi-entrez2rdf.jsp
trunk/src/war/jsp-bio2rdf/ncbi-map-http2rdf.jsp
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From: <p_a...@us...> - 2009-06-05 00:45:42
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Revision: 503
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=503&view=rev
Author: p_ansell
Date: 2009-06-05 00:42:35 +0000 (Fri, 05 Jun 2009)
Log Message:
-----------
add first iteration of profile support
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
Added Paths:
-----------
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/xsl-sources/bind.xsl
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From: <p_a...@us...> - 2009-06-05 02:45:47
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Revision: 504
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=504&view=rev
Author: p_ansell
Date: 2009-06-05 02:45:43 +0000 (Fri, 05 Jun 2009)
Log Message:
-----------
add some more profile related information
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/debug-configuration.jsp
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From: <p_a...@us...> - 2009-06-05 09:34:13
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Revision: 507
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=507&view=rev
Author: p_ansell
Date: 2009-06-05 09:34:02 +0000 (Fri, 05 Jun 2009)
Log Message:
-----------
fix up the configuration output for providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/debug-configuration.jsp
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