Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[166] trunk/src/war (Page 2)

[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[166] trunk/src/war

From: <p_a...@us...> - 2008-11-22 23:10:43

Revision: 166
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=166&view=rev
Author:   p_ansell
Date:     2008-11-22 23:10:38 +0000 (Sat, 22 Nov 2008)

Log Message:
-----------
* add debug to dump raw list of provider URL's
* change license query rdf/xml to directly reference cc:license
* add commented list of providers into bio2rdf.properties which are not configured but are used in rdfiser scripts of going to be used soon 

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/debug-configuration.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[172] trunk/src/war

From: <p_a...@us...> - 2008-11-25 09:33:23

Revision: 172
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=172&view=rev
Author:   p_ansell
Date:     2008-11-25 09:33:19 +0000 (Tue, 25 Nov 2008)

Log Message:
-----------
make provider configurations output to rdf

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/debug-configuration.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[173] trunk/src/war

From: <p_a...@us...> - 2008-11-25 21:05:27

Revision: 173
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=173&view=rev
Author:   p_ansell
Date:     2008-11-25 21:05:19 +0000 (Tue, 25 Nov 2008)

Log Message:
-----------
avoid broken sesame pretty printer for rdf/xml

Modified Paths:
--------------
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp

Added Paths:
-----------
    trunk/src/war/error-sesame-output.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[175] trunk/src/war

From: <p_a...@us...> - 2008-11-26 02:41:00

Revision: 175
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=175&view=rev
Author:   p_ansell
Date:     2008-11-26 02:40:51 +0000 (Wed, 26 Nov 2008)

Log Message:
-----------
add biopatml and terms ontologies

Added Paths:
-----------
    trunk/src/war/biopatml.owl
    trunk/src/war/terms.owl


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[189] trunk/src/war

From: <p_a...@us...> - 2008-12-11 23:22:09

Revision: 189
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=189&view=rev
Author:   p_ansell
Date:     2008-12-11 22:05:44 +0000 (Thu, 11 Dec 2008)

Log Message:
-----------
add in rdf output of custom queries and rdf rules

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/debug-configuration.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[193] trunk/src/war

From: <p_a...@us...> - 2008-12-16 03:25:19

Revision: 193
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=193&view=rev
Author:   p_ansell
Date:     2008-12-16 03:25:09 +0000 (Tue, 16 Dec 2008)

Log Message:
-----------
fix robots.txt for download directory and fix some html providers in properties file

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/robots.txt


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[208] trunk/src/war

From: <p_a...@us...> - 2009-03-10 04:35:34

Revision: 208
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=208&view=rev
Author:   p_ansell
Date:     2009-03-10 04:35:25 +0000 (Tue, 10 Mar 2009)

Log Message:
-----------
add working introductory pipes functionality

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp

Added Paths:
-----------
    trunk/src/war/WEB-INF/lib/commons-httpclient-3.1.jar
    trunk/src/war/WEB-INF/lib/jcs-1.3.jar
    trunk/src/war/WEB-INF/src/cache.ccf
    trunk/src/war/WEB-INF/src/constructbio2rdf.pipe
    trunk/src/war/bio2rdfpipes.jsp

Removed Paths:
-------------
    trunk/src/war/WEB-INF/lib/commons-httpclient-3.0.1.jar
    trunk/src/war/WEB-INF/src/mixingfoaf.pipe


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[211] trunk/src/war

From: <p_a...@us...> - 2009-03-13 09:08:10

Revision: 211
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=211&view=rev
Author:   p_ansell
Date:     2009-03-13 09:07:57 +0000 (Fri, 13 Mar 2009)

Log Message:
-----------
add statistics gathering capabilities

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/bio2rdfpipes.jsp

Added Paths:
-----------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
    trunk/src/war/errorstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[212] trunk/src/war

From: <p_a...@us...> - 2009-03-13 09:18:10

Revision: 212
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=212&view=rev
Author:   p_ansell
Date:     2009-03-13 09:18:09 +0000 (Fri, 13 Mar 2009)

Log Message:
-----------
minor updates for usability

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/errorstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[221] trunk/src/war

From: <p_a...@us...> - 2009-03-18 22:24:04

Revision: 221
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=221&view=rev
Author:   p_ansell
Date:     2009-03-18 22:23:52 +0000 (Wed, 18 Mar 2009)

Log Message:
-----------
pipes related changes

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/bio2rdfpipes.jsp

Added Paths:
-----------
    trunk/src/war/WEB-INF/src/bio2rdf_basic.pipe
    trunk/src/war/WEB-INF/src/bio2rdf_subject_object_slicing.pipe
    trunk/src/war/WEB-INF/src/operatormapping.xml

Removed Paths:
-------------
    trunk/src/war/WEB-INF/src/bio2rdf-basic.pipe
    trunk/src/war/WEB-INF/src/bio2rdf-subject-object-slicing.pipe


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[222] trunk/src/war

From: <p_a...@us...> - 2009-03-18 23:52:32

Revision: 222
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=222&view=rev
Author:   p_ansell
Date:     2009-03-18 23:52:27 +0000 (Wed, 18 Mar 2009)

Log Message:
-----------
make pipes work, and add hack to avoid common sesame parser error with rdf:type http://bio2rdf.org/uniprot:Protein

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/bio2rdfpipes.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[227] trunk/src/war

From: <p_a...@us...> - 2009-03-20 03:48:02

Revision: 227
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=227&view=rev
Author:   p_ansell
Date:     2009-03-20 03:47:58 +0000 (Fri, 20 Mar 2009)

Log Message:
-----------
cleanup of atlas2rdf.jsp and start to implement nocommunication type providers in addition to httpgeturl and httppostsparql

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[228] trunk/src/war

From: <p_a...@us...> - 2009-03-20 04:19:59

Revision: 228
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=228&view=rev
Author:   p_ansell
Date:     2009-03-20 04:19:50 +0000 (Fri, 20 Mar 2009)

Log Message:
-----------
fix up strategy for taxon2taxonomy normalisation and sameAs

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[233] trunk/src/war

From: <p_a...@us...> - 2009-03-27 05:05:43

Revision: 233
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=233&view=rev
Author:   p_ansell
Date:     2009-03-27 05:05:41 +0000 (Fri, 27 Mar 2009)

Log Message:
-----------
update robots.txt and the namespace list for obo.bio2rdf.org

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/robots.txt


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[235] trunk/src/war

From: <p_a...@us...> - 2009-03-29 03:38:07

Revision: 235
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=235&view=rev
Author:   p_ansell
Date:     2009-03-29 03:38:03 +0000 (Sun, 29 Mar 2009)

Log Message:
-----------
new regex structure to allow for - (dashes) in namespaces and minor change to pipes.jsp

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/bio2rdfpipes.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[236] trunk/src/war

From: <p_a...@us...> - 2009-03-30 05:03:47

Revision: 236
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=236&view=rev
Author:   p_ansell
Date:     2009-03-30 05:03:39 +0000 (Mon, 30 Mar 2009)

Log Message:
-----------
add debugging for namespace/query/provider relationships

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml

Added Paths:
-----------
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[241] trunk/src/war

From: <p_a...@us...> - 2009-03-30 07:14:04

Revision: 241
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=241&view=rev
Author:   p_ansell
Date:     2009-03-30 07:13:59 +0000 (Mon, 30 Mar 2009)

Log Message:
-----------
make regex tests all pass if they are configured correctly, and add /admin/ to robots.txt

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/namespaceproviders.jsp
    trunk/src/war/robots.txt
    trunk/src/war/test-regexmethods.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[245] trunk/src/war

From: <p_a...@us...> - 2009-03-31 03:16:46

Revision: 245
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=245&view=rev
Author:   p_ansell
Date:     2009-03-31 03:16:41 +0000 (Tue, 31 Mar 2009)

Log Message:
-----------
minor fixes to lsid parts

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/jsp-bio2rdf/wsdl-authority.jsp
    trunk/src/war/jsp-bio2rdf/wsdl-service.jsp
    trunk/src/war/jsp-bio2rdf/wsdl-service2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[247] trunk/src/war

From: <p_a...@us...> - 2009-03-31 07:10:30

Revision: 247
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=247&view=rev
Author:   p_ansell
Date:     2009-03-31 07:10:28 +0000 (Tue, 31 Mar 2009)

Log Message:
-----------
lsid not working, but add more parameters to use in URL template replacements

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
    trunk/src/war/jsp-bio2rdf/namespacecounts.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[248] trunk/src/war

From: <p_a...@us...> - 2009-04-01 02:55:42

Revision: 248
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=248&view=rev
Author:   p_ansell
Date:     2009-04-01 02:55:40 +0000 (Wed, 01 Apr 2009)

Log Message:
-----------
lsid broken again, but large changes still sufficient to be committable

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp
    trunk/src/war/test-regexmethods.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[249] trunk/src/war

From: <p_a...@us...> - 2009-04-01 05:11:20

Revision: 249
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=249&view=rev
Author:   p_ansell
Date:     2009-04-01 05:11:11 +0000 (Wed, 01 Apr 2009)

Log Message:
-----------
lsid conversion working!!

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[250] trunk/src/war

From: <p_a...@us...> - 2009-04-01 05:22:54

Revision: 250
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=250&view=rev
Author:   p_ansell
Date:     2009-04-01 05:22:50 +0000 (Wed, 01 Apr 2009)

Log Message:
-----------
cleanup

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/jsp-bio2rdf/lsid-bio2rdf2lsid.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[251] trunk/src/war

From: <p_a...@us...> - 2009-04-02 05:27:51

Revision: 251
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=251&view=rev
Author:   p_ansell
Date:     2009-04-02 05:27:50 +0000 (Thu, 02 Apr 2009)

Log Message:
-----------
add blacklisting for clients so that bots who ignore robots.txt will be restricted in the number of queries they can perform in a given period

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/namespaceproviders.jsp
    trunk/src/war/robots.txt

Added Paths:
-----------
    trunk/src/war/blacklisterror.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[260] trunk/src/war

From: <p_a...@us...> - 2009-04-02 07:29:21

Revision: 260
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=260&view=rev
Author:   p_ansell
Date:     2009-04-02 07:29:15 +0000 (Thu, 02 Apr 2009)

Log Message:
-----------
fix namespace list with space before comma-separated list and add new provider

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[276] trunk/src/war

From: <p_a...@us...> - 2009-04-12 04:39:06

Revision: 276
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=276&view=rev
Author:   p_ansell
Date:     2009-04-12 04:39:04 +0000 (Sun, 12 Apr 2009)

Log Message:
-----------
add configuration file syntax and initial support for arbitrary namespace index match positions

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/atlas2rdf.jsp


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Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[166] trunk/src/war (Page 2)

bio2rdf-svncommits