Thread: [Bio2rdf-svncommits] SF.net SVN: bio2rdf:[508] trunk/src/war (Page 5)

[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[508] trunk/src/war

From: <p_a...@us...> - 2009-06-06 07:22:34

Revision: 508
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=508&view=rev
Author:   p_ansell
Date:     2009-06-06 07:22:23 +0000 (Sat, 06 Jun 2009)

Log Message:
-----------
add another class for RuleTest

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/test-bio2rdf-configuration.n3
    trunk/src/war/debug-configuration.jsp

Added Paths:
-----------
    trunk/src/war/WEB-INF/src/org/bio2rdf/RuleTest.java


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[509] trunk/src/war

From: <p_a...@us...> - 2009-06-06 11:22:54

Revision: 509
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=509&view=rev
Author:   p_ansell
Date:     2009-06-06 11:22:53 +0000 (Sat, 06 Jun 2009)

Log Message:
-----------
do some more implementation in an attempt to get IMPORT_FROM_RDF to work

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/test-bio2rdf-configuration.n3
    trunk/src/war/debug-configuration.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[510] trunk/src/war

From: <p_a...@us...> - 2009-06-07 00:57:46

Revision: 510
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=510&view=rev
Author:   p_ansell
Date:     2009-06-07 00:57:44 +0000 (Sun, 07 Jun 2009)

Log Message:
-----------
turn Vectors and String[] into Lists

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/QueryDebug.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/SparqlQueryCreator.java
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/bio2rdfpipes.jsp
    trunk/src/war/blacklisterror.jsp
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/errorstats.jsp
    trunk/src/war/jsp-bio2rdf/namespacecounts.jsp
    trunk/src/war/multifetch.jsp
    trunk/src/war/namespaceproviders.jsp
    trunk/src/war/redirectToId.jsp
    trunk/src/war/test-regexmethods.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[511] trunk/src/war

From: <p_a...@us...> - 2009-06-07 01:58:16

Revision: 511
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=511&view=rev
Author:   p_ansell
Date:     2009-06-07 01:55:11 +0000 (Sun, 07 Jun 2009)

Log Message:
-----------
make debug-configuration.jsp work as desired

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/debug-configuration.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[512] trunk/src/war

From: <p_a...@us...> - 2009-06-08 08:45:14

Revision: 512
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=512&view=rev
Author:   p_ansell
Date:     2009-06-08 08:45:06 +0000 (Mon, 08 Jun 2009)

Log Message:
-----------
make more changes to attempt to fix issue with possible multiplicity of namespace titles compared to namespace URI's, and implement system where any of the matching namespace URI's for a namespace title can be accommodated

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[513] trunk/src/war

From: <p_a...@us...> - 2009-06-08 11:25:46

Revision: 513
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=513&view=rev
Author:   p_ansell
Date:     2009-06-08 11:25:29 +0000 (Mon, 08 Jun 2009)

Log Message:
-----------
more of the way to getting things working smoothly

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Profile.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[515] trunk/src/war

From: <p_a...@us...> - 2009-06-09 02:09:47

Revision: 515
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=515&view=rev
Author:   p_ansell
Date:     2009-06-09 02:09:10 +0000 (Tue, 09 Jun 2009)

Log Message:
-----------
get things working nicely again!!!!

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/test-bio2rdf-configuration.n3
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[516] trunk/src/war

From: <p_a...@us...> - 2009-06-09 02:46:29

Revision: 516
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=516&view=rev
Author:   p_ansell
Date:     2009-06-09 02:46:21 +0000 (Tue, 09 Jun 2009)

Log Message:
-----------
reduce logging levels now that issue is fixed

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[517] trunk/src/war

From: <p_a...@us...> - 2009-06-09 03:09:52

Revision: 517
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=517&view=rev
Author:   p_ansell
Date:     2009-06-09 03:08:59 +0000 (Tue, 09 Jun 2009)

Log Message:
-----------
fix up test-regexmethods page and slightly alter debugging for atlas2rdf.jsp

Modified Paths:
--------------
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/test-regexmethods.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[521] trunk/src/war

From: <p_a...@us...> - 2009-06-09 05:23:42

Revision: 521
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=521&view=rev
Author:   p_ansell
Date:     2009-06-09 05:23:02 +0000 (Tue, 09 Jun 2009)

Log Message:
-----------
fix bug with !isNamespaceSpecific queries in the same way as the namespace specific queries, by changing query.title to query.key to reflect the reliance on the URI now rather than the title

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[525] trunk/src/war

From: <p_a...@us...> - 2009-06-10 06:17:12

Revision: 525
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=525&view=rev
Author:   p_ansell
Date:     2009-06-10 06:16:19 +0000 (Wed, 10 Jun 2009)

Log Message:
-----------
add explict excludes for some insertions for quebecdnsonly

Modified Paths:
--------------
    trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[528] trunk/src/war

From: <p_a...@us...> - 2009-06-12 08:04:17

Revision: 528
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=528&view=rev
Author:   p_ansell
Date:     2009-06-12 08:03:13 +0000 (Fri, 12 Jun 2009)

Log Message:
-----------
add more statistics functionality, not complete yet

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherUriQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/errorstats.jsp
    trunk/src/war/jsp-bio2rdf/crossref-openurldoi2rdf.jsp

Added Paths:
-----------
    trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/serverstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[529] trunk/src/war

From: <p_a...@us...> - 2009-06-14 23:58:09

Revision: 529
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=529&view=rev
Author:   p_ansell
Date:     2009-06-14 23:57:09 +0000 (Sun, 14 Jun 2009)

Log Message:
-----------
commit some more progress

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/errorstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[531] trunk/src/war

From: <p_a...@us...> - 2009-06-16 04:59:43

Revision: 531
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=531&view=rev
Author:   p_ansell
Date:     2009-06-16 04:59:42 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
get statistics insertion working for mquter setup

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcherSparqlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/serverstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[532] trunk/src/war

From: <p_a...@us...> - 2009-06-16 05:32:17

Revision: 532
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=532&view=rev
Author:   p_ansell
Date:     2009-06-16 05:32:15 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
first attempt at getting stats submission working using the HTTP post method

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/serverstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[533] trunk/src/war

From: <p_a...@us...> - 2009-06-16 05:53:16

Revision: 533
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=533&view=rev
Author:   p_ansell
Date:     2009-06-16 05:53:15 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
change to different sparql endpoint dedicated to statistics

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/serverstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[535] trunk/src/war

From: <p_a...@us...> - 2009-06-16 06:45:35

Revision: 535
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=535&view=rev
Author:   p_ansell
Date:     2009-06-16 06:45:34 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
add current date to statistics

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/errorstats.jsp
    trunk/src/war/serverstats.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[536] trunk/src/war

From: <p_a...@us...> - 2009-06-16 09:02:37

Revision: 536
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=536&view=rev
Author:   p_ansell
Date:     2009-06-16 09:02:36 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
add datetime datatype to the statistics rdf

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[537] trunk/src/war

From: <p_a...@us...> - 2009-06-16 09:28:26

Revision: 537
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=537&view=rev
Author:   p_ansell
Date:     2009-06-16 09:28:24 +0000 (Tue, 16 Jun 2009)

Log Message:
-----------
more changes, hopefully it is stable now

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[542] trunk/src/war

From: <p_a...@us...> - 2009-06-17 21:38:34

Revision: 542
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=542&view=rev
Author:   p_ansell
Date:     2009-06-17 21:38:32 +0000 (Wed, 17 Jun 2009)

Log Message:
-----------
add blog feed to the index pages

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/index.html
    trunk/src/war/mquter-index.html
    trunk/src/war/quebec-index.html


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[549] trunk/src/war

From: <p_a...@us...> - 2009-06-22 01:22:24

Revision: 549
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=549&view=rev
Author:   p_ansell
Date:     2009-06-22 01:01:59 +0000 (Mon, 22 Jun 2009)

Log Message:
-----------
more refactoring to turn Settings.CONSTANT into URI's where possible to improve the RDF configuration format

Modified Paths:
--------------
    trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
    trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
    trunk/src/war/WEB-INF/src/org/bio2rdf/CustomQuery.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/HttpUrlQueryRunnable.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/StatisticsEntry.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/multifetch.jsp
    trunk/src/war/namespaceproviders.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[558] trunk/src/war

From: <p_a...@us...> - 2009-06-22 02:35:39

Revision: 558
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=558&view=rev
Author:   p_ansell
Date:     2009-06-22 02:35:38 +0000 (Mon, 22 Jun 2009)

Log Message:
-----------
fix some more places where namesapce uri's weren't fixed by previous commits

Modified Paths:
--------------
    trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
    trunk/src/war/WEB-INF/urlrewrite.xml
    trunk/src/war/jsp-bio2rdf/kegg-search-http2rdf.jsp
    trunk/src/war/jsp-bio2rdf/uniprot-search-http2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[567] trunk/src/war

From: <p_a...@us...> - 2009-06-22 06:44:32

Revision: 567
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=567&view=rev
Author:   p_ansell
Date:     2009-06-22 06:44:30 +0000 (Mon, 22 Jun 2009)

Log Message:
-----------
make process happen, although there are still some bugs with the application of the rdf rules

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
    trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
    trunk/src/war/atlas2rdf.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[577] trunk/src/war

From: <p_a...@us...> - 2009-06-23 01:05:31

Revision: 577
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=577&view=rev
Author:   p_ansell
Date:     2009-06-23 01:05:26 +0000 (Tue, 23 Jun 2009)

Log Message:
-----------
make pages work again by adding java.io.File as an include

Modified Paths:
--------------
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/namespaceproviders.jsp
    trunk/src/war/serverstats.jsp
    trunk/src/war/test-regexmethods.jsp


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[Bio2rdf-svncommits] SF.net SVN: bio2rdf:[576] trunk/src/war

From: <p_a...@us...> - 2009-06-23 01:12:59

Revision: 576
          http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=576&view=rev
Author:   p_ansell
Date:     2009-06-23 00:38:49 +0000 (Tue, 23 Jun 2009)

Log Message:
-----------
make WEB-INF directory path platform independent so it will work on windows if anyone chooses to deploy it there and reduce logging levels for profiles again

Modified Paths:
--------------
    trunk/src/war/WEB-INF/src/log4j.properties
    trunk/src/war/atlas2rdf.jsp
    trunk/src/war/debug-configuration.jsp
    trunk/src/war/namespaceproviders.jsp
    trunk/src/war/serverstats.jsp
    trunk/src/war/test-regexmethods.jsp


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