bio2rdf-svncommits Mailing List for bio2rdf (Page 7)
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From: <p_a...@us...> - 2010-04-06 03:32:41
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Revision: 842
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=842&view=rev
Author: p_ansell
Date: 2010-04-06 03:32:34 +0000 (Tue, 06 Apr 2010)
Log Message:
-----------
remove cu mirrors from configuration until they are fixed
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-03-31 05:25:35
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Revision: 841
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=841&view=rev
Author: p_ansell
Date: 2010-03-31 05:25:29 +0000 (Wed, 31 Mar 2010)
Log Message:
-----------
add sabio-rk and patent html providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-03-29 04:08:56
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Revision: 840
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=840&view=rev
Author: p_ansell
Date: 2010-03-29 04:08:50 +0000 (Mon, 29 Mar 2010)
Log Message:
-----------
add minor extensions to the model, including formal, optional, link between normalisation rules and namespaces they may be relevant to
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/NamespaceEntry.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfNormalisationRule.java
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From: <p_a...@us...> - 2010-03-25 06:02:54
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Revision: 839
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=839&view=rev
Author: p_ansell
Date: 2010-03-25 06:02:48 +0000 (Thu, 25 Mar 2010)
Log Message:
-----------
add biocarta namespaces and rules and providers and make debugging code more informative in settings if there is an rdf parse exception
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2010-03-09 02:19:07
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Revision: 838
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=838&view=rev
Author: p_ansell
Date: 2010-03-09 02:18:59 +0000 (Tue, 09 Mar 2010)
Log Message:
-----------
change some links, providers and delete cu mirror from blacklist
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/carleton-index.html
trunk/src/war/index.html
trunk/src/war/mquter-index.html
trunk/src/war/quebec-index.html
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From: <p_a...@us...> - 2010-02-25 09:21:38
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Revision: 837
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=837&view=rev
Author: p_ansell
Date: 2010-02-25 09:21:30 +0000 (Thu, 25 Feb 2010)
Log Message:
-----------
change the pubmed provider, and update some pipes
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/bio2rdf_gi_geneid_iproclass.pipe
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2010-02-09 04:08:21
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Revision: 836
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=836&view=rev
Author: p_ansell
Date: 2010-02-09 04:08:15 +0000 (Tue, 09 Feb 2010)
Log Message:
-----------
add mutdb license provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2010-02-09 04:03:27
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Revision: 835
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=835&view=rev
Author: p_ansell
Date: 2010-02-09 04:03:22 +0000 (Tue, 09 Feb 2010)
Log Message:
-----------
add ctd license reference
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2010-02-09 03:56:07
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Revision: 834
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=834&view=rev
Author: p_ansell
Date: 2010-02-09 03:56:01 +0000 (Tue, 09 Feb 2010)
Log Message:
-----------
add more html providers and some of the missing namespace entries for current providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-08 05:31:23
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Revision: 833
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=833&view=rev
Author: p_ansell
Date: 2010-02-08 05:31:17 +0000 (Mon, 08 Feb 2010)
Log Message:
-----------
add ecocyc html provider
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-08 05:23:05
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Revision: 832
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=832&view=rev
Author: p_ansell
Date: 2010-02-08 05:22:59 +0000 (Mon, 08 Feb 2010)
Log Message:
-----------
add more html providers
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
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From: <p_a...@us...> - 2010-02-05 04:26:41
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Revision: 831
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=831&view=rev
Author: p_ansell
Date: 2010-02-05 04:26:34 +0000 (Fri, 05 Feb 2010)
Log Message:
-----------
update some pipes for today
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi_to_pubmed_to_mesh.pipe
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/bio2rdfpipes.jsp
trunk/src/war/serverstats.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/bio2rdf_gi_geneid_iproclass.pipe
trunk/src/war/WEB-INF/src/bio2rdf_gi_to_geneid_to_pubmed.pipe
trunk/src/war/WEB-INF/src/bio2rdf_gi_to_pubmed.pipe
Removed Paths:
-------------
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi_to_pubmed.pipe
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From: <p_a...@us...> - 2010-02-04 06:27:23
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Revision: 830
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=830&view=rev
Author: p_ansell
Date: 2010-02-04 06:27:17 +0000 (Thu, 04 Feb 2010)
Log Message:
-----------
add new pipes
Modified Paths:
--------------
trunk/src/war/bio2rdfpipes.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi_to_pubmed.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi_to_pubmed_to_mesh.pipe
trunk/src/war/WEB-INF/src/bio2rdf_ncbigi_to_pubmed_to_mesh_labels.pipe
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From: <p_a...@us...> - 2010-02-04 02:35:17
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Revision: 828
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=828&view=rev
Author: p_ansell
Date: 2010-02-04 01:13:33 +0000 (Thu, 04 Feb 2010)
Log Message:
-----------
add in chempedia substance and chempedia substance name support
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-ruletests-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-02-04 02:34:20
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Revision: 829
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=829&view=rev
Author: p_ansell
Date: 2010-02-04 02:04:15 +0000 (Thu, 04 Feb 2010)
Log Message:
-----------
change some stuff in pipes
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/bio2rdfpipes.jsp
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From: <p_a...@us...> - 2010-02-03 23:38:59
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Revision: 827
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=827&view=rev
Author: p_ansell
Date: 2010-02-03 23:38:51 +0000 (Wed, 03 Feb 2010)
Log Message:
-----------
add new pipes and providers and update sesame to latest version
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/src/bio2rdf_similar_drugbank_drugs_by_drugbank_targets.pipe
trunk/src/war/bio2rdfpipes.jsp
Added Paths:
-----------
trunk/src/war/WEB-INF/lib/openrdf-sesame-2.3.1-onejar.jar
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_uniprot.pipe
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_uniprot_to_drugbank.pipe
Removed Paths:
-------------
trunk/src/war/WEB-INF/lib/openrdf-sesame-2.2.4-onejar.jar
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From: <p_a...@us...> - 2010-02-03 03:43:06
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Revision: 826
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=826&view=rev
Author: p_ansell
Date: 2010-02-03 03:43:00 +0000 (Wed, 03 Feb 2010)
Log Message:
-----------
add field for new feature that will add static triples based on provider instead of just the current queries, and make it configurable so it doesn't add triples if none are returned
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
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From: <p_a...@us...> - 2010-02-03 03:41:41
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Revision: 825
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=825&view=rev
Author: p_ansell
Date: 2010-02-03 03:41:35 +0000 (Wed, 03 Feb 2010)
Log Message:
-----------
translate ncbi geneid to similar drugs using hgnc, symbol, drugbank_targets, pdb and pfam, and back to drugbank_targets and drugbank_drugs
Added Paths:
-----------
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_symbol.pipe
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_drugbank.pipe
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_drugbank_drugs.pipe
trunk/src/war/WEB-INF/src/bio2rdf_geneid_to_hgnc_to_drugbank_targets.pipe
trunk/src/war/WEB-INF/src/bio2rdf_similar_drugbank_drugs_by_drugbank_targets.pipe
trunk/src/war/WEB-INF/src/bio2rdf_similar_drugbank_targets_by_pfam_pdb.pipe
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From: <p_a...@us...> - 2010-01-26 23:04:49
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Revision: 824
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=824&view=rev
Author: p_ansell
Date: 2010-01-26 23:04:40 +0000 (Tue, 26 Jan 2010)
Log Message:
-----------
add japan mirror to build.xml
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
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From: <p_a...@us...> - 2010-01-18 00:07:34
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Revision: 823
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=823&view=rev
Author: p_ansell
Date: 2010-01-18 00:07:28 +0000 (Mon, 18 Jan 2010)
Log Message:
-----------
tag version 0.8.2
Modified Paths:
--------------
tags/0.8.2/src/war/xsl-sources/geneid.xsl~
Added Paths:
-----------
tags/0.8.2/
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From: <p_a...@us...> - 2010-01-18 00:01:56
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Revision: 822
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=822&view=rev
Author: p_ansell
Date: 2010-01-18 00:01:39 +0000 (Mon, 18 Jan 2010)
Log Message:
-----------
bump version number
Modified Paths:
--------------
trunk/build.xml
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From: <p_a...@us...> - 2010-01-17 23:17:57
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Revision: 821
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=821&view=rev
Author: p_ansell
Date: 2010-01-17 23:17:43 +0000 (Sun, 17 Jan 2010)
Log Message:
-----------
fix up RDFa display
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/templates/proptable.vm
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From: <p_a...@us...> - 2009-12-11 06:41:12
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Revision: 820
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=820&view=rev
Author: p_ansell
Date: 2009-12-11 06:41:05 +0000 (Fri, 11 Dec 2009)
Log Message:
-----------
update the autogenerated file, and remove extraneous statements from the license definitions
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2009-12-10 23:58:03
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Revision: 819
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=819&view=rev
Author: p_ansell
Date: 2009-12-10 23:57:55 +0000 (Thu, 10 Dec 2009)
Log Message:
-----------
add some more licenses
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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From: <p_a...@us...> - 2009-12-10 23:50:22
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Revision: 818
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=818&view=rev
Author: p_ansell
Date: 2009-12-10 23:50:14 +0000 (Thu, 10 Dec 2009)
Log Message:
-----------
add some more license references
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
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