bio2rdf-svncommits Mailing List for bio2rdf (Page 5)
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From: <p_a...@us...> - 2010-09-20 02:54:43
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Revision: 892
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=892&view=rev
Author: p_ansell
Date: 2010-09-20 02:54:37 +0000 (Mon, 20 Sep 2010)
Log Message:
-----------
add config option for turning off the client IP blacklist
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/blacklisterror.jsp
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From: <p_a...@us...> - 2010-07-06 01:38:39
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Revision: 891
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=891&view=rev
Author: p_ansell
Date: 2010-07-06 01:38:33 +0000 (Tue, 06 Jul 2010)
Log Message:
-----------
update profiles to include statistics at mquter again
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
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From: <p_a...@us...> - 2010-06-24 03:25:04
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Revision: 890
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=890&view=rev
Author: p_ansell
Date: 2010-06-24 03:24:58 +0000 (Thu, 24 Jun 2010)
Log Message:
-----------
add the api version that was used into each query bundle so that future implementations may be able to use this information
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2010-06-23 22:21:42
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Revision: 889
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=889&view=rev
Author: p_ansell
Date: 2010-06-23 22:21:36 +0000 (Wed, 23 Jun 2010)
Log Message:
-----------
add issn support for the newly loaded pdb endpoint and make pdb queries unsafe
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-06-16 04:10:42
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Revision: 888
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=888&view=rev
Author: p_ansell
Date: 2010-06-16 04:10:36 +0000 (Wed, 16 Jun 2010)
Log Message:
-----------
change over to config.bio2rdf.org for configuration fetching, and add dailymed_drugs to another relevant provider
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-06-08 04:26:00
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Revision: 887
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=887&view=rev
Author: p_ansell
Date: 2010-06-08 04:25:54 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
minor changes
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-06-08 02:55:24
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Revision: 886
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=886&view=rev
Author: p_ansell
Date: 2010-06-08 02:55:17 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
also need to workaround qut for the new obo endpoint
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
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From: <p_a...@us...> - 2010-06-08 02:48:13
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Revision: 885
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=885&view=rev
Author: p_ansell
Date: 2010-06-08 02:48:07 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
finish working around qut restrictions and fix dbpedia to obo normalisation rules
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/org/bio2rdf/ProviderConfiguration.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
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From: <p_a...@us...> - 2010-06-08 00:48:16
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Revision: 884
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=884&view=rev
Author: p_ansell
Date: 2010-06-08 00:48:10 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
lower logging levels again
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-06-08 00:46:14
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Revision: 883
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=883&view=rev
Author: p_ansell
Date: 2010-06-08 00:46:08 +0000 (Tue, 08 Jun 2010)
Log Message:
-----------
remove mquter providers that won't be up any more
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-profiles-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-06-04 05:50:59
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Revision: 882
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=882&view=rev
Author: p_ansell
Date: 2010-06-04 05:50:53 +0000 (Fri, 04 Jun 2010)
Log Message:
-----------
add two new providers and namespaces from the new bioontology.org/sparql endpoint
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-05-31 06:32:17
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Revision: 881
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=881&view=rev
Author: p_ansell
Date: 2010-05-31 06:32:11 +0000 (Mon, 31 May 2010)
Log Message:
-----------
minor fixes to statistics code
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2010-05-31 05:01:01
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Revision: 880
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=880&view=rev
Author: p_ansell
Date: 2010-05-31 05:00:52 +0000 (Mon, 31 May 2010)
Log Message:
-----------
add in option to disable statistics via a Settings attribute and track the original endpoint alongside the replaced endpoint
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/QueryBundle.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/web-production-template-qutesoe.xml
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2010-05-30 22:07:57
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Revision: 879
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=879&view=rev
Author: p_ansell
Date: 2010-05-30 22:07:51 +0000 (Sun, 30 May 2010)
Log Message:
-----------
make robots.txt dynamically generate, first step to making it integrated across a set of mirrors
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/WEB-INF/urlrewrite.xml
Added Paths:
-----------
trunk/src/war/robotstxt.jsp
Removed Paths:
-------------
trunk/src/war/robots.txt
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From: <p_a...@us...> - 2010-05-28 00:05:47
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Revision: 878
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=878&view=rev
Author: p_ansell
Date: 2010-05-28 00:05:39 +0000 (Fri, 28 May 2010)
Log Message:
-----------
fix some provider issues
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-05-26 05:40:54
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Revision: 877
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=877&view=rev
Author: p_ansell
Date: 2010-05-26 05:40:48 +0000 (Wed, 26 May 2010)
Log Message:
-----------
reenable the workaround for dbpedia to wikipedia
Modified Paths:
--------------
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2010-05-26 04:19:12
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Revision: 876
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=876&view=rev
Author: p_ansell
Date: 2010-05-26 04:19:05 +0000 (Wed, 26 May 2010)
Log Message:
-----------
eliminate the dbpedia namespace in favour of a wikipedia namespace that encompasses all various attempts to convert wikipedia to semantic markup
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/BlacklistController.java
trunk/src/war/WEB-INF/urlrewrite.xml
trunk/src/war/bio2rdf.owl
trunk/src/war/demo.rdf
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From: <p_a...@us...> - 2010-05-26 02:20:39
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Revision: 875
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=875&view=rev
Author: p_ansell
Date: 2010-05-26 02:20:33 +0000 (Wed, 26 May 2010)
Log Message:
-----------
lower logging level
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
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From: <p_a...@us...> - 2010-05-26 02:19:33
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Revision: 874
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=874&view=rev
Author: p_ansell
Date: 2010-05-26 02:19:27 +0000 (Wed, 26 May 2010)
Log Message:
-----------
fix up dbpedia issues by making up a new namespace for dbpedia categories since it appears that the colon after Category: in dbpedia URIs will never be encoded even though the rest of the URI is percent encoded for colons and other reserved characters
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-namespaceentries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-queries-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
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From: <p_a...@us...> - 2010-05-26 00:59:27
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Revision: 873
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=873&view=rev
Author: p_ansell
Date: 2010-05-26 00:59:21 +0000 (Wed, 26 May 2010)
Log Message:
-----------
fix the output bug that was coming from using sesame's Value.stringValue() that is locale dependent, fix by wrapping up this method to make sure it is interpreted using UTF-8 consistently from now on
Modified Paths:
--------------
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/HtmlPageRenderer.java
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetcher.java
trunk/src/war/WEB-INF/src/org/bio2rdf/Utilities.java
trunk/src/war/WEB-INF/templates/proptable.vm
trunk/src/war/atlas2rdf.jsp
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From: <p_a...@us...> - 2010-05-25 23:43:44
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Revision: 872
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=872&view=rev
Author: p_ansell
Date: 2010-05-25 23:43:38 +0000 (Tue, 25 May 2010)
Log Message:
-----------
update velocity library
Added Paths:
-----------
trunk/src/war/WEB-INF/lib/velocity-1.6.4.jar
Removed Paths:
-------------
trunk/src/war/WEB-INF/lib/velocity-1.6.2.jar
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From: <p_a...@us...> - 2010-05-25 23:38:30
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Revision: 871
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=871&view=rev
Author: p_ansell
Date: 2010-05-25 23:38:24 +0000 (Tue, 25 May 2010)
Log Message:
-----------
fix bug with urlrewriter plugin not decoding UTF-8 properly
Modified Paths:
--------------
trunk/build.xml
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/RdfFetchController.java
trunk/src/war/WEB-INF/src/org/bio2rdf/VelocityHelper.java
trunk/src/war/WEB-INF/urlrewrite.xml
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From: <p_a...@us...> - 2010-05-19 03:04:42
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Revision: 870
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=870&view=rev
Author: p_ansell
Date: 2010-05-19 03:04:36 +0000 (Wed, 19 May 2010)
Log Message:
-----------
make serverstats.jsp more informative in logs and analyse the number of rdf statements in the complete configuration set
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-licenses-config.n3
trunk/src/war/WEB-INF/src/log4j.properties
trunk/src/war/WEB-INF/src/org/bio2rdf/Settings.java
trunk/src/war/WEB-INF/src/org/bio2rdf/bio2rdf.properties
trunk/src/war/serverstats.jsp
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From: <p_a...@us...> - 2010-05-18 03:43:18
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Revision: 869
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=869&view=rev
Author: p_ansell
Date: 2010-05-18 03:43:12 +0000 (Tue, 18 May 2010)
Log Message:
-----------
add more providers and rdfrules
Modified Paths:
--------------
trunk/src/war/WEB-INF/autogenerated-bio2rdf-query-insert-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-providers-html-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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From: <p_a...@us...> - 2010-05-18 03:09:20
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Revision: 868
http://bio2rdf.svn.sourceforge.net/bio2rdf/?rev=868&view=rev
Author: p_ansell
Date: 2010-05-18 03:09:13 +0000 (Tue, 18 May 2010)
Log Message:
-----------
make gdb more functional to avoid not returning results for gdb:GDB URIs where possible
Modified Paths:
--------------
trunk/src/war/WEB-INF/base-bio2rdf-providers-config.n3
trunk/src/war/WEB-INF/base-bio2rdf-rdfrules-config.n3
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