Search Results for "sequence scaffold, java"
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Showing 219 open source projects for "sequence scaffold, java"
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Serverless Java container
A Java wrapper to run Spring, Spring Boot, Jersey, and other apps
...This means you can keep much of your familiar Java-based architecture (controllers, filters, dependency injection) and deploy it in a serverless environment without rewriting everything from scratch. The project supports multiple framework flavors and versions, provides archetypes (Maven/Gradle) to scaffold applications, and maintains separate branches for legacy (Java EE/1.x) and modern (Jakarta EE/2.x+) ecosystems. -
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The Ballerina programming language
The Ballerina Programming Language
Ballerina is an open-source programming language for the cloud that makes it easier to use, combine, and create network services. Network primitives in the language make it simpler to write services and run them in the cloud. Structural types with support for openness are used both for static typing within a program and for describing service interfaces. Type-safe, declarative processing of JSON, XML, and tabular data with language-integrated queries. Explicit error handling, static types,... -
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Kamon Telemetry
Distributed Tracing, Metrics and Context Propagation for applications
Kamon Telemetry is a set of libraries for instrumenting applications running on the JVM. With Kamon Telemetry you can collect metrics, propagate context across threads and services, and get distributed traces automatically. The best way to get started is by following our installation guides and taking it from there. Have fun with Kamon. Monitor your backend applications, fix performance issues, and get alerted when problems happen. All without being a monitoring expert. Everybody starts... -
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Triton Inference Server
The Triton Inference Server provides an optimized cloud
Triton Inference Server is an open-source inference serving software that streamlines AI inferencing. Triton enables teams to deploy any AI model from multiple deep learning and machine learning frameworks, including TensorRT, TensorFlow, PyTorch, ONNX, OpenVINO, Python, RAPIDS FIL, and more. Triton supports inference across cloud, data center, edge, and embedded devices on NVIDIA GPUs, x86 and ARM CPU, or AWS Inferentia. Triton delivers optimized performance for many query types, including... -
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BRIG is a cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large number of genomes, with a focus on handling genome assembly data. Please cite the BRIG paper if BRIG is used to generate figures for publications: NF Alikhan, NK Petty, NL Ben Zakour, SA Beatson (2011) BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons, BMC Genomics, 12:402. PMID: 21824423
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The MolTools Java library provides tools for building applications that handle nucleotide sequence data. Features include sequence I/O, handling of lists/databases of sequences, calculation of Tm, and other utilities for sequence design.
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Mahjongg Solitaire
Classic Mahjongg Solitaire with a few handy features to fun gameplay
Classic Mahjongg Solitaire with a few handy features to fun gameplay. (Requires Java). -
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PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
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MEDe-KIT
Micro Educational and Development Kit (MEDe-KIT)
Micro Educational and Development Kit (MEDe-KIT) is an educational software for storing and viewing information about study material information uploaded to it like images and text descriptions. It uses ODBC for storing uploaded data into local database. Its features also include a genes sequencer for generating combination of DNA and RNA sequence entered. Thanks and hope this is useful for everyone who are interested in science and learning. The project was developed using NetBeans IDE and Java. Default login user name : user Default login password : user -
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ProbeMaker is a framework for design of sets of oligonucleotide probes. It allows the design of different types of probes made up of separate sequence elements. A Plug-in mechanism allows extension of the framework with new functionalities.
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JDiskMark
Java Disk Benchmark Utility
JDiskMark is a powerful and versatile disk benchmarking tool written in Java, designed to help accurately measure the performance of your storage devices across different operating systems. Whether you're testing HDDs, SSDs, or network drives, JDiskMark provides reliable insights into your disk's read and write... -
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Chess Round Robin Manager
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table by the... -
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JSchemePlus
An hack of Jscheme with a lot of enhancements and additional features.
...It allows to redistribute a script in an executable JAR file of only ~40K and implements all of R4RS with a lot of additional functions, like: (execute command) (random) (sequence from up-to step) (split list element) (string-split string sub-string) (read-all-from-file file) (write-to-file file data) (file-size file) etc... For the complete list read the HELP file or type (help). JSchemePlus needs only the Java Virtual Machine (version 6 or higher) that, in the case, is very easy to download and install. -
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Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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FxDl
Fast JavaFX video and audio downloader powered by yt-dlp
FxDl is a lightweight, high-performance desktop download manager built with JavaFX. Designed for speed and simplicity, it provides a clean graphical interface for managing video and audio content streams across your favorite platforms. By leveraging the power and reliability of yt-dlp and FFmpeg under the hood, FxDl handles everything from individual media extractions to full playlist queues effortlessly. Key Features: * Clean, intuitive JavaFX user interface with real-time progress... -
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis function and beautiful operation interface of HiPlot (https://hiplot.cn), which I developed based VUE.js and Node.js, etc. -
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GETL
ETL engine based on Groovy
P.S. Dear friends. Repository migration to https://github.com/ascrus/getl . You can download jar file from this site or maven. GETL - based package in Groovy, which automates the work of loading and transforming data. His name is an acronym for «Groovy ETL». GETL is a set of libraries of pre-built classes and objects that can be used to solve problems unpacking, transform and load data into programs written in Groovy, or Java, as well as from any software that supports the work with... -
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Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should then... -
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SequenceDiagram
SequencePlugin for IntelliJ IDEA
Sequence Diagram is a tool to generate simple sequence diagrams (UML) from Java, kotlin, scala(Beta), and Groovy (limited) code. -
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JKlubTV
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table by the... -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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SpeedGaps
A Java AWT desktop application for Gaps Solitaire (aka "Montana").
A Java AWT desktop application for Gaps Solitaire (aka "Montana"). It uses a reduced card deck to fast play. -
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BitLogic
Simple Java computer algebra calculator
A calculator that solves many types of problems including solving equations computing derivatives and integrals simplifying expressions graphing equations 2d and 3d reverse polish notation, algebraic and word based interpreter infinite writing board for writing out equations requires java 11 or more
