Search Results for "sequence scaffold, java"
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Showing 244 open source projects for "sequence scaffold, java"
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1
Scaffold Hunter is a JAVA-based software tool for the analysis of structure-related biochemical data. It enables generation of and navigation in a scaffold tree hierarchy annotated with various data.
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should... -
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PlantUML
Generate diagrams from textual description
... and intuitive language. (see PlantUML Language Reference Guide). Images can be generated in PNG, in SVG or in LaTeX format. It is also possible to generate ASCII art diagrams (only for sequence diagrams). -
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SequenceDiagram
SequencePlugin for IntelliJ IDEA
Sequence Diagram is a tool to generate simple sequence diagrams (UML) from Java, kotlin, scala(Beta), and Groovy (limited) code. -
ConnectWise CPQ, formerly ConnectWise Sell, is a professional quote and proposal automation software for IT solution providers. ConnectWise CPQ offers a wide range of tools that enables IT solution providers to save time, quote more, and win big. Top features include professional quote or proposal templates, product catalog and sourcing, workflow automation, sales reporting, and integrations with best-in-breed solutions like Cisco, Dell, HP, and Salesforce.
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The Ballerina programming language
The Ballerina Programming Language
..., and concurrency safety, combined with a familiar, readable syntax make programs reliable and maintainable. Easy and efficient concurrency with sequence diagrams and language-managed threads without the complexity of asynchronous functions. Programs have both a textual syntax and an equivalent graphical form based on sequence diagrams. -
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Kamon Telemetry
Distributed Tracing, Metrics and Context Propagation for applications
... monitoring with logs because they are there by default. Just connect to your server and start tailing. But logs have a hard time showing you the overall response times for your application, or whether certain calls to the database are happening in sequence or parallel (among a million other things). -
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TapTargetView
An implementation of tap targets from the Material Design guidelines
An implementation of tap targets from Google's Material Design guidelines on feature discovery. Prompt users to try features or functionality that can be completed in a single tap, such as saving a location in a map app. Prompt users to try features or functionality that require more than one tap to complete, such as turning on automatic backup in a photo app. Feature discovery prompts have more impact when they are presented to the right users at contextually relevant moments. When... -
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Triton Inference Server
The Triton Inference Server provides an optimized cloud
... real-time, batched, ensembles, and audio/video streaming. Provides Backend API that allows adding custom backends and pre/post-processing operations. Model pipelines using Ensembling or Business Logic Scripting (BLS). HTTP/REST and GRPC inference protocols based on the community-developed KServe protocol. A C API and Java API allow Triton to link directly into your application for edge and other in-process use cases. -
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jDiskMark
Java Disk Benchmark Utility
Cross platform disk benchmark utility written in Java. Measure your storage drive's read and write speeds by creating and accessing sample data files at your chosen location. Results are presented in an easy-to-understand graph, allowing clear characterization of storage device behavior. Customize a benchmark by adjusting the block sequence, sample size and block size. Runs are automatically saved allowing easy review and comparisons. Please try our new new windows installer: https... -
ConnectWise ScreenConnect, formerly ConnectWise Control, is a remote support solution for Managed Service Providers (MSP), Value Added Resellers (VAR), internal IT teams, and managed security providers. Fast, reliable, secure, and simple to use, ConnectWise ScreenConnect helps businesses solve their customers' issues faster from any location. The platform features remote support, remote access, remote meeting, customization, and integrations with leading business tools.
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OmicsSuite
OmicsSuite: a suite for multi-omics analysis and visualization.
OmicsSuite (https://github.com/OmicsSuite/, https://omicssuite.github.io), original name BioSciTools, a desktop program developed based on Java 11, aims to make new exploration and contribution to the development of bioinformatics, and realize data analysis and visualization in the fields of sequence analysis, multimomics (transcriptomics, genomics, protein omics, metabonomics, single cell), microbiology, clinical, etc. The program inherits the excellent interactive components, perfect analysis... -
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PFAAT is a Java-based multiple sequence alignment editor and viewer designed for protein family analysis. You can download PFAAT from http://pfaat.sourceforge.net/
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Chess Round Robin Manager
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table... -
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GETL
ETL engine based on Groovy
P.S. Dear friends. Repository migration to https://github.com/ascrus/getl . You can download jar file from this site or maven. GETL - based package in Groovy, which automates the work of loading and transforming data. His name is an acronym for «Groovy ETL». GETL is a set of libraries of pre-built classes and objects that can be used to solve problems unpacking, transform and load data into programs written in Groovy, or Java, as well as from any software that supports the work with Java... -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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JKlubTV
Java Schach Turnierverwaltung / Java Chess Tournament Management
Manage chess round robin tournaments with JKlubTV Version 3.0.0-beta This application stores the data belonging to round robin into a SQLite database. It is intended for webmasters who want to easily manage a club tournament in their own chess club. The HTML tables that are to be published for the website will be created easily by the application. Automatically calculate the total points, Sonneborn Berger points of each player, as well as their sequence DWZ, and sorts the HTML table... -
16
Billiards Covers
This zip jar contains the current coverings of periodic paths.
Researchers, Mathematicians and Enthusiasts. Download "Billiards Covers" to see the most current list of periodic paths in triangles. Download "Billiards Everything" to discover new periodic billiard paths, an unresolved problem from 1775! Follow "The Great Periodic Path Hunt" at gwtokarsky.github.io for the latest news. Email tokarsky@ualberta.ca for feedback. -
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flom
Free Lock Manager
... and transactional sequence. libflom, the library shipped with FLoM, allows you to develop your own application using a simple C, C++, Java, Perl, PHP or Python client API. SSL/TLS security for network communication, X.509 certificates for peer to peer mutual authentication. -
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sRNAWorkbench
The UEA sRNA Workbench
A suite of tools for analysing small RNA (sRNA) data from Next Generation Sequencing devices. Including expression profiling of known mirco RNA (miRNA), identification of novel miRNA in deep-sequencing data and identification of other interesting landmarks within high-throughput genetic data -
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SpeedGaps
A Java AWT desktop application for Gaps Solitaire (aka "Montana").
A Java AWT desktop application for Gaps Solitaire (aka "Montana"). It uses a reduced card deck to fast play. -
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BitLogic
Simple Java computer algebra calculator
A calculator that solves many types of problems including solving equations computing derivatives and integrals simplifying expressions graphing equations 2d and 3d reverse polish notation, algebraic and word based interpreter infinite writing board for writing out equations requires java 11 or more -
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photogrid
Minimalistic tool to arrange images in a grid, saving the result as a
Minimalistic tool to arrange images in a grid, saving the result as a png image (or sequence of png images). Usage java -cp photogrid-1.0.jar tech.rallen.photogrid.Main This has been tested with OpenJDK 11, and should work with any version of Java from 11 on. The tool takes 5 optional command line parameters 0 : path of input directory (default is ./testimages). 1 : width (in pixels) of each input image in the output image (default 1000) 2 : height (in pixels... -
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NGSpop
NGSpop: identifying & visualizing sequence variation in deepvariant
*NOTICE* The official software(NGSpop) will be updated soon, so please visit us in 2/29. Thank you. -
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Citrus
Citrus: Editing HiC data for de novo genome assembly
juicer and 3D-DNA are two tools that re-arranges HiC data (xxx.hic format) and splits/re-orders super-scaffold data (xxx.assembly) to improve de novo genome assembly. Juicebox was specifically designed to tune or adjust genomic sequences based on HiC data. However, the current Juicebox version does not have a function to save updated HiC data and to summarize chromosome sequences. Thus, we created Citrus which can edit super-scaffolds according to chromatin conformation data captured in xxx.hic... -
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RxLifecycle
Lifecycle handling APIs for Android apps using RxJava
This library allows one to automatically complete sequences based on a second lifecycle stream. This capability is useful in Android, where incomplete subscriptions can cause memory leaks. You must start with an Observable<T> representing a lifecycle stream. Then you use RxLifecycle to bind a sequence to that lifecycle. It assumes you want to end the sequence in the opposing lifecycle event - e.g., if subscribing during start, it will terminate on stop. If you subscribe after pause... -
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Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).