Search Results for "sequence scaffold, java"
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Showing 8 open source projects for "sequence scaffold, java"
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Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data, and ideal for creating publication-quality views in which the tips of a tree are aligned with the rows of a character matrix (e.g., a sequence alignment).
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Index biological data (genbank sheets, Uniprot...) in a Solr indexer, with index shard support and provides a query interface. Project goal is to create a virtual image with indexer and web interface to query and visualize biological data.
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Protein Data Bank transformed into an SQL database with a very powerful search engine and a rich web interface. The engine combines chemical, sequence and 3D structure searches. The interface provides statistics, sequence and 3D structure alignments.
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DUPS can be used to present any set of images depicting a chronological sequence. It creates a set of HTML pages acting as a browser based picture/pdf viewer. The emphasis lies on displaying two pictures side by side enabling the user to compare them.
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ESTminer is a Web application and database schema for interactive mining of expressed sequence tag (EST) contig and cluster data sets.
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TweakKey adds keyboard macros and autotext entries to all Windows programs. You can redefine your keyboard and use any key sequence or word to insert arbitrary text or execute macros written in scripting host languages (JScript, VBS, etc) or Java.
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primejobs
job scheduling and control
primejobs is program to control and visualize user's commands execution flow. The commands (jobs) are to be executed at specified time in specified sequence. Unlike usual crontab/scripting primejobs allows direct control of the execution flow, setting notifications related to job events, stop/resume execution at any point etc. primejobs design is influenced by OddJob (http://rgordon.co.uk/oddjob/index.html) which is regarded as major breakthrough in understanding how practical job execution... -
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danaides
Meta data extractor based on ontologies
Danaides stores meta-data from biological banks in a graph databases as well as OBO formatted ontologies. It also provides a web query interface to parse ontologies or extract nodes based on ontology requirements. Example: Get all known elements that are in family of Fish (species ontology) AND a RNA (sequence ontology).
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