Search Results for "cell negative analysis" - Page 3
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Showing 76 open source projects for "cell negative analysis"
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The #1 Embedded Analytics Solution for SaaS Teams.Qrvey’s comprehensive embedded analytics software enables you to design more customizable analytics experiences for your end users.
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FluctuationAnalyzer is a standalone application developed in Matlab for electrophysiological analysis of whole cell current responses to a bipolar square wave voltage pulses. It operates on Axon Binary Files (.abf) and calculates the values of impedance parameters of a cell (membrane capacitance Cm, membrane conductance Gm and the access resistance Ra). This program is a Beta version
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Edu Expressions
Open Source Online Examination System
Edu Expression is open source php mysql based online exam system and performance analysis tools equipped with all the modern features to manage and conduct online examination with ease. Some of the features at a glance are 1. Question Bank 2. Question Difficulty Level 3. Question Types 4. Student Group 5. Graphical Report 6. Exam Flexible Settings 7. Minus Marking/Negative Marking 8. Reports and Analysis Tools 9. Group performance analysis chart 10. Web Based installer. -
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CaspLab - Comet Assay Software Project Lab is a cross-platform image analysis software to measure level of DNA damage in SCGE (Single Cell Gel Electrophoresis) method called also comet assay method.
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This is the prototype version of software for robust detecting and segmentation of cell nuclei in 3D fluorescence labeled microscopy images. First release coming soon...
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Myrtle
A simple programmable spreadsheet for learning statistics.
Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots... -
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DMEAS
DNA Methylation Entropy Analysis Software
DMEAS (DNA Methylation Entropy Analysis Software) is written in C# language. It is a user-friendly DNA methylation analysis tool for DNA methylation pattern visualization and extraction, DNA methylation level calculation and DNA methylation entropy analysis. DMEAS progressively scans the mapping results of bisulfite sequencing reads to extract DNA methylation patterns for contiguous CpG dinucleotides. It was developed in order to assess the DNA methylation variations within a cell population... -
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kmernorm
Kmernorm performs kmer normalization for single cell sequencing.
Kmernorm especially uses for single cell sequencing. It convert kmer distribution from whatever distribution to normal distribution, which is assumption for many genome analysis tools such as assembly. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used... -
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GLMNB
GLMNB: a shape-based peak calling tool for ChIP-Seq data analysis
This is the beta-version of a shape-based peak calling tool for ChIP-Seq data analysis. It is built using Generalized Linear Model with Negative binomial distribution. This tool accounts for the common peak shape, local variability of peak shifting distance and negative binomial background noise. -
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Crystal Turtlebug
A Crystal Enumeration Program
... of a crystal net , and to the resulting images of those figures, to generate a unit cell of the net along with associated lattice vectors. This is a very preliminary version (Version 0.8) and consequently both unfriendly and limited. It consists of several interlocking Python worksheets. Additional worksheets contain programs for producing input files; output is to be analyzed by Systre and TOPOS and other crystal analysis programs accepting CGD text files as input. -
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ezBioNet is a biological modeling and simulation tool of molecular interaction that occurred in a cell. We aim that this software can be used for collecting biological data and making biological models to simulate it by biological researchers. ezBioNet can build a detailed biological model including signal transduction, enzyme kinetics, expression network, etc. It also support number of numerical analysis method to simulate the biological reaction networks.
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ImmunoSym
A Population Dynamics Analysis for Immune Cell Interactions
ImmunoSym is an open-source program based on a Population Dynamics Analysis for Immune Cell Interactions (between APC and T cells). A Simulation for Immune Cell Interactions where we study the dynamics of a model that describes the competitive interaction between Antigen Presenting Cells (APC) and Adaptative T Cells. To analyse this model we have used two different mathematical approaches. With Ordinary differential equation (ODEs) and implementing the Stochastic Simulation Algorithm (SSA... -
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GoFigure2 is an open-source, cross-platform application for visualizing, processing and analyzing of multidimensional microscopy data. Users can visualize, segment and track cells through time, detect cell-division and ultimately generate lineages.
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When a user makes a table on a web page dynamic, the rows and columns will become sortable,text can be inserted to the headers and cells of the table and background and text color can be chosen for each cell. A small analysis tool is also included.
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""" E-Cell's source code repository has moved to GitHub! https://github.com/ecell The development of E-Cell now continues on GitHub. The Subversion repository was abandoned. """ E-Cell System is an object-oriented software suite for modeling, simulation, and analysis of large scale complex systems such as biological cells. It allows many components driven by multiple algorithms with different timescales to coexist in a model.
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The GPDE is a biological protein database based on the PRIDE xml format. It combines proteomics experiments based on the investigated cell type and creates a biological meta-analysis. Try it out at http://www.meduniwien.ac.at/proteomics/database.
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FociCounter is a simple and user-friendly program for analysis of gamma-H2AX foci. It allows to determine the number of foci in a single cell, a foci intensity as well as a cell intensity.
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Implementation of Golomb Ruler having length of 10 marks on a Cell Broadband Engine simulator, and doing its correctness and performance analysis. Here, we are not aiming for Optimal Golomb Ruler.
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Cell Motility Analysis Package analyzes timelapse sequences of moving cells. Various quantitites characterizing motility are calculated, including normal velocity of the membrane, cell contact area, and spatio-temporal auto-correlation functions.
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Introducing Kaixax555's Addition Calculator! Calculating 20 whole numbers, decimals and negative numbers at a time!
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Genetic programming environment to inference context free grammars base on positive and negative examples of language.
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The project aims to make publishing of wildlife survey data easier using PHP Mapscript. By uploading survey or sightings data the user will be presented with a generalization map based on the Quarter Degree Grid Cell system.
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The algorithm allows any kind of weights (costs, frequencies), including non-numerical ones. The {0, 1, ..., n-1} alphabet is used to encode message. Built tree is n-ary one.The algorithm is based on a set of template classes : Cell(SYMBOL, WEIGHT), Node(
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Find the pitch of a power spectrum (signal) as per the afferent/efferent neural crossover. This occurs between the Lateral olivocochlear efferents and the inner hair cell afferents.