Search Results for "command-line" - Page 7

The SBML ODE Solver is a command-line tool and programming library (ISO/ANSI C) for construction and numerical integration of an ODE system, derived from an SBML based description of a biochemical reaction network. Development has moved to https://github.com/raim/SBML_odeSolver . Please download the latest version from there!

netcdf-tools is a set of tools for creating netCDF files. It supports command line use on both Windows and Unix as well as use directly as a Java library. Written by CSIRO Australia and funded by the ANDS Australian Research Data Commons Project

Shawn is a discrete event simulator for large wireless sensor networks. It does not compete with others well-known simulators by simulating individual ISO layers and the protocols within these layers. Shawn emerged from a more algorithmic approach. THE PROJECT HAS BEEN MIGRATED TO GITHUB: https://github.com/itm/shawn

Sandia National Laboratories’ (SNL) environmental assessment modeling tool helps optimize the design of MHK-turbine array layouts within ocean, tidal, and river systems to balance energy generation efficiency with environmental considerations. The new tool, SNL-EFDC, is an augmented version of US EPA’s Environmental Fluid Dynamics Code (EFDC) and includes; (1) a new module that simulates energy conversion (momentum withdrawal) by MHK turbine-like devices including commensurate changes in the...

JDice rolls dice. A simple yet rich language allows to express several kinds of roll schemes, including any dice type, rerolling, selecting highest/lowest, counting, etc.

The openLBMflow is an fast fluid flow solver based on Lattice Boltzmann Method. Main future are 2D and 3D code, single and multiphase models, Output data in VTK format can be directly open in Paraview. Download Windows or Linux binary version now.

An easy to install and use toolbox for octave for the calculation purpose of power system along with features like Economic load dispatch, load flow analysis, transmission line parameter and swing equation etc

VgaSim simulates a VGA screen connected to your VHDL and VeriLog design. Simulated signals from your desing will handle the virtual VGA screen such as it were real. VgaSim works with VHDL and VeriLog simulators such as ModelSim and GHDL.

This project aims to model parasites in order to assist in the analysis and prediction of their behavior.

OnuriS (Open soURce wImax Simulator) is a simulation platform designed for WiMAX in order to analyze network performances and develop particular allocators for better bandwidth allocation strategies that could greatly improve the overall system.

VSYML is an automated symbolic simulator for VHDL designs.

MonteCarlo portfolio simulation - it can be used as stand-alone command line application - it takes simple XML file needed data as entry and creates simple XML file with output, also this stuff have JNI and ISAPI interface.

The SNP ratio test can assess significance of enrichment of significant associations in genome-wide association studies. Tests can be applied to pathways such as KEGG/GO, or user-defined pathways to test specific hypotheses. See link below for more.

Guanxi is a robust analysis and simulation application for Social Network Analysts. Guanxi allows researchers in the field to create, import, and export an endless array of networks, analyze their structure, and run custom dynamics over them.

simgi is a simulation engine for stochastic simulations of reactive systems using Gillespie's method written in Haskell.

HOT is a package of Matlab and Octave compatible functions that manage thermodynamic data for a wide range of species. Functions calculate almost all the most common thermodynamic quantities of mixtures. Python users may also want to look at PYroMat at https://chmarti1.github.io/PYroMat/index.html

This easy to run and change program for developers, it contains several evolutionary based strategies allowing you try among some function samples

BARNACLE is a Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.

SystemML is an XML format for exchange of mathematical systems for numerical simulation. This toolbox offers support for the SystemML infrastructure. It is included in the distributions of SystemML execution clients, but can be installed separately.

XML based parsers and translation tools for electronic design automation (EDA). Tools for manipulating netlist formats (e.g. SPICE, Spectre, CDL), languages (e.g. Verilog-AMS, VHDL-AMS, ASM), and other useful text-based formats (e.g. Liberty, Gerber).

ALC (Automated Layer Construction) is a computer program that highly simplifies the building of reduced modular models of signaling systems, according to the layer-based approach.

A verilog language compiler written using Java and JavaCC. It produces a netlist, an ascii text file, of all the cell connections. It can compile very large circuits comprised of many modules.

A MUD "totally" written in Perl. It runs an engine which relies on a extensible Perl MudLib and interprets user-programmable scripts in a fashion that reminds the old-time LPC MUD, but now everything is in Perl. It uses Perl v.5.10.0 and SQLite 3.3.7.

A family of programs for building coarse-grained models (eg. of macromolecules), manipulating them (geometrical transformations and more) and calculating their X-ray scattering patterns (1D and 2D too). Uses PVM for parallelization.

This is the native MS windows release of OpenFOAM, an open source toolbox for Computational Fluid Dynamics (CFD). It was built with MinGW C++ as a set of native windows applications, which improves performance and eliminates the need for Unix emulations.