Open Source Windows Simulation Software - Page 19

The "GeneticCode" C++ class is designed to generate versions of the genetic code subject to the requirements of the three major models of the genetic code origin and evolution (about these models see, e.g., Koonin & Novozhilov, 2009, IUBMB Life). This class was written specifically to perform statistical test for the paper Makukov & shCherbak (2017), but it might be used for a wider class of studies related to the genetic code. By default, the class "GeneticCode" generates alternative genetic codes, with the reqirement of block structure, and, optionally, with the assumption of stereochemical or biosynthetic models (to impose the assumption of the adaptive model, simply filter the codes using the error_cost() function). See Appendix in Makukov & shCherbak (2017) for the description of the algorithm. The code requires Qt 5. To compile the provided example, run 'qmake' to produce the Makefile, and then run 'make' to compile the executable file. License: Public Domain.

This project is meant to simulate Evolution using genetic algorithms and unity engine.

A base for programs. Includes algorythms for Q-learning and SOM's etc. too. Examples: Hamron: Simulates evolution, uses the 2D-renderer. DriveUnit: created for school, for a robotic arm, uses the 3D-renderer. Hlearn: http://www.sagenb.org/home/pub/8

This software allows to fit various hyperelastic constitutive models. Optimal set of parameters of a selected constitutive model can be identified. Many advanced setting, methods and corrections are available to get optimal results according to the user's preference.

Create phyiscal simulations easily through IPSA which combines the OpenInventor 3D API with the Open Dynamics Engine (ODE). Scenes are read from .iv files and simulated in the supplied viewer applications. Find it at: http://ipsa.sourceforge.net

ising models are a statistical thermodynamics toy system that physicists love to play about with. I've done all the fiddly graphics work for an Ising model so you can see it on the screen. You want to play with the file ising.c to make the model do various things other than just respond to temperature. If you can see the results, it's much easier to spot problems with code / interesting phenomena.

JABM is a Java framework for building agent-based simulation models using a discrete-event simulation framework.

JASA allows researchers in agent-based computational economics to write high-performance trading simulations using a number of different auction protocols. The software also provides base classes for implementing simple adaptive trading agents.

JMathLib is used to evaluate complex mathematical expressions and display the results graphically. It can be used either interactively or to interpret script files (m-files). It is a clone of Matlab, Octave, FreeMat, Scilab but written 100% in java.

JPowerFlow - a steady state electric power system power flow solver.

JSBSim Commander is a GUI front-end for the development of aircraft flight models for the JSBSim flight dynamics model (used by FlightGear, etc.).

A simulator for the M68HC11 microcontroller written in Java, based on the Wookie HC11 Simulator sources.

Conway's Game of Life cellular automaton programmed in Delphi with lots of features.

LTSA it's a tool that supports LTS construction, elaboration and annalisys.

LaserFoam performs simulations of laser pulses using an adaptive split step Fourier method to solve the generalized nonlinear Schrödinger equation. It provides a graphical environment to run and visualize the results.

LibNav is a library providing general algorithms for navigation and positioning. It includes datum conversions, reference systems conversions, vector and matrix operations, Least-Mean-Squares, Kalman Filter, Runge-Kutta, statistical tools and more.

This is the liquid rocket engine parameter solver Alpha release 1 which is the first version for this project. This first version will help to find thrust values by giving some values to the system

A full-client web application, practical and useful developer diagrams for the construction of the logic of a circuit, with circuit simulator, AC, DC and Transient Analysis, for your Computer Desktop. You can to export yours diagrams in pdf, png, jpg, gif and tiff. ========== Support Windows 7 and later with ia-32 or arch x64 ========== Android app: https://play.google.com/store/apps/details?id=com.ulm.droidtronics Chrome extension: http://bit.ly/29Tdvz7 Opera add-on: http://bit.ly/1igCRWQ

The collection MICROMECHANICS (micromechanics.zip) includes: (1) lecture notes (microbook.pdf) on the analysis of heterogeneous materials and homogenization, and (2) source codes (microcode.tar.bz2) that accompany the computational exercises in Part II of the notes. Instructions on using the codes are given in the README file of each exercise. Further instructions can be found in the file microcode.tar.bz2. The MATLAB codes are used for visualization, evaluating analytical bounds and estimates as well as in the generation of digital and particulate microstructures. The Fortran codes are based on the finite element method in linear and nonlinear settings, the latter capable of finite deformations with damage. The underlying theory is outlined in the lecture notes. -- İlker Temizer Assistant Professor Department of Mechanical Engineering Bilkent University 06800 Bilkent, Ankara Turkey

This project provides the source code for the Mitochondiral Infectious Damage Adaptation (MIDA) model of aging. A probabilistic modeling approach is applied by solving the master equation in mitochondrial quality state space in the presence of fusion-fission events, decay of functional quality, mitophagy and mitochondrial biogenesis, as well as molecular damage originating from a random source or from infectious events during fusion and fission. The provided source code is written in C and performs the time integration of the master equation for the time-evolution of the probability to find mitochondria in states of quality q at time t. Output is generated in terms of data files and the graphical visualization of readout parameters is automatically performed using the Graphical Layout Engine (GLE; see: http://glx.sourceforge.net/). Please, send email to thilo.figge<at>hki-jena.de to request a copy of the source code.

The Model Interaction Environment for Neuroscience provides tools for development, searching, editing, execution, and visualization of biophysical models, abstract mathematical models, and experimental protocols used in neuroscience research.

The Modular System for Shelves and Coasts (MOSSCO) is a coupling framework for Earth System Models. It helps users to integrate their own numerical models with other developments. Quick Start: git clone git://git.code.sf.net/p/mossco/setups mossco-setups git clone git://git.code.sf.net/p/mossco/code mossco-code cd mossco-code cat QuickStart.md or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md Beware: this is alpha software, expect trouble! ------------------------- Better, read the full documentation online http://www.mossco.de/doc or make it yourself make doc acroread doc/mossco_documentation.pdf ---------------------- Why MOSSCO? MOSSCO, the "Modular System for Shelves and Coasts" is a framework for coupling processes or domains that are originally developed in standalone numerical models. The software MOSSCO implements this infrastructure in the form of a library of components and couplers, and of example coupled application.

An easy-to-use simulator for decentralized distributed scheduling in Clusters, Grids, and Cloud ecosystem MaGate 2.0 is now available from github! https://github.com/huangye177/magate

Optical design application geared to telescopes and other optical systems. Features include layout design, optimization, standard expected output, ability to import ZMX and LNS files

MapSim is a simulation engine for System Dynamics. It provides a .NET library that works on Windows and under Mono on Linux. A simple GUI tool is provided too. MapSim uses its own modeling language described in the reference manual.