Open Source Mac Simulation Software - Page 49

This command-line program flips a coin.

Cppfunct implements run-time C++ function objects, with creation, invocation, manipulation, and combination. The function object concept abstracts ways to parameterise other classes beyond simple static values.

cupSODA is a simulator of biological systems that exploits the remarkable memory bandwidth and computational capability of GPUs. cupSODA allows to efficiently execute in parallel large numbers of simulations, which are usually required to investigate the emergent dynamics of a given biological system under different conditions. cupSODA works by automatically deriving the system of ordinary differential equations from a reaction-based mechanistic model, defined according to the mass-action kinetics, and then exploiting the numerical integration algorithm, LSODA

Datagam is a tool for extracting data from output or punch files produced by GAMESS(US) or FireFly (old name PC GAMESS) packages. Mac GUI wrapper also available. Upstream version of the project goes to the launchpad. Only final versions of the source code and compiled binars will be available from this domain.

ddsweet is collection of tools and routines for science calculation and simulation.

The goal of project "defE" is to build a library to handle the simulation of the transformation and collision about deformable geometry using the sphere-spring system. It uses CUDA to deal with the enormous mount of parallel computable calculation.

An ensemble of mathematical model is presented that all show diauxic growth behaviour of a bacterial culture. Carbon catabolite repression (CCR) is the main mechanism controlling carbohydrate uptake in bacteria, and therefore also controlling whether or not different carbon sources are metabolized in parallel or sequentially. Although described as a paradigm of the regulation of bacterial metabolism, the underlying mechanisms remain controversial. The models in the ensemble can be categorized according to regulatory, stoichiometric, and physiological constraints and differ from each other on only a single aspect. We distinguish four groups of models: (1) flux balance models that only define reaction kinetics for substrate uptake and by-product excretion, (2) kinetic models without and (3) kinetic models with regulation on the metabolic and/or genetic level, and (4) resource allocation models.

DIFFR is a menu-driven graphical software whereby the problem of a plane wave diffraction on a rough surface can be solved using several numerical and approximate methods.

dmcut2 is a scientific program designed to simulate chemical reactions at surfaces using Metropolis and Monte-Carlo methods. Short ranged interactions between adsorbates may be taken into account. Emphasis was put on code readability and usability.

The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.

A coupled dual porosity Stokes model implemented with FEniCS. References: 1. C. Douglas, X. Hu, B. Bai, X. He, M. Wei and J. Hou, "A Data Assimilation Enabled Model for Coupling Dual Porosity Flow with Free Flow," 2018 17th International Symposium on Distributed Computing and Applications for Business Engineering and Science (DCABES), Wuxi, 2018, pp. 304-307. doi: 10.1109/DCABES.2018.00085 2. Hu X., Douglas C.C. (2019) An Implementation of a Coupled Dual-Porosity-Stokes Model with FEniCS. In: Rodrigues J. et al. (eds) Computational Science – ICCS 2019. ICCS 2019. Lecture Notes in Computer Science, vol 11539. Springer, Cham

eANN is an implementation of several kind of neural networks written with the intention of providing a (hopefully) easy to use, and easy to modify, OOP source code. It is possible to have several different sized networks running simultaneously, each functioning independently of the others or acting as inputs between them. It also easy to modify the structure so that neurons (or even whole layers) can be created/pruned during simulation allowing dynamic expansion/contraction of the network.

ERepSim presents an agent-based cloud simulation environment integrating electronic institutions from multiagent research to simulate Internet-of-Services systems.

Derivation, entirely by probability theory, of the correlation coefficient for a two-channel Bell test, with simulation in Ada and other languages. The Nobel Committe for Physics bans this program for subversive content. (Mirror of the repository at https://github.com/chemoelectric/eprb_signal_correlations)

Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.

fPotencia is the fruit of free time and passion for power systems simulation. After observing the lack of ready-to-implement libraries for power system analisys, and that the existing ones focus on command line workflow, I decided myself to start a project to fill the gap. Since Power system simulations have started needing to be executed in parallel, the old C-like designs are outdated; modular design is now needed to launch many simulations at the same time based on a base circuit. fPotencia is programmed in C++, but my intention is to bring JAVA, C#, Python and perhaps MATLAB versions of it. All of them in native code and whenever possible with the same modular structure.

Famos is a Java-based framework for developing agent-based models. It uses the discrete-event simulation framework Desmo-J (http://desmoj.sourceforge.net) as its simulation engine. Famos implements event-driven time advance and focusses on supporting an explicit model of space for the environment, including the movement of agents. Famos was developed in the context of a PhD project. Many aspects of its implementation are therefore still in the prototype stage. It does come with two example models (a re-implementation of Schelling's segregation model and of Epstein and Axtell's Sugarscape model). Famos

A 3D robots simulator written in python. Uses ODE physics and OpenGL/Inventor graphics. A differential wheels robot is provided. There is no user interface but the code is small and is intended to be easily extended for your simulations.

molecular simulation program for anisotropic particle shape and potential

discretesim is a framework for implementing discrete simulations in Java.

gen_names populates customer/invoice tables with random (but realistic looking) data. The data has been gathered from various sources including census and local council web sites. It is supposed to be used to road test various DBMS solutions.

gfit creates an interface between computational models and experimental data and provides tools for their analysis

gpNoCsim++ is a Network-on-Chip simulator based on gpNoCsim that extends the gpNoCsim and adds new features such as: asynchroniztion (using multithreading), loading network traffic from file, new topologies(i.e WK-Recursive), GUI and reporting features.

GRid Advanced Simulation System

VPP - Velocity Prediction Program - a Matlab library for sailing boat performance simulation. Based on DSYHS or user provided data. ###### A python version is currently under development and available upon request, please contact me at gianmail+gvpp@gmail.com ###### The new beta version replaces the previous alpha version after some bugs fixing and enhancements in the postprocessing output.