Former home of the Virtual Cell platform (VCell), see http://vcell.org
The Repast Suite is a family of free agent-based modeling libraries.
(RoboSim) Java based Robot Localization and Path Planner Simulator.
Analyze molecular simulation data
Simulation, analysis, and management of the movement of water
The Vienna Topography Simulator
OPen ARchitecture PARallel PARticle code
Accurate and efficient Java library that simulates biological models
C library for SED-ML
A software package for estimating generalized ensemble weights in Mark
A simulator for robotic hands.
Billiard table simulator
EXperimental REplicator COllider
Library for spherical harmonic transforms (SHT)
Mod of the evolution simulation and artificial life program Biogenesis
A raytracing framework for optical/non-optical physics simulations