Search Results for "open cell"
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Showing 509 open source projects for "open cell"
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Deploy Red Hat Ansible Automation Platform on Microsoft Azure for a strategic automation solution that allows you to orchestrate, govern and operationalize your Azure environment.
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Stop messing with tools that aren’t designed to amplify volunteer programs. With VolunteerMatters, it’s a delight to manage everything in one place.
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1
awesome-single-cell
Community-curated list of software packages and data resources
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. List of software packages (and the people developing these methods) for single-cell data analysis, including RNA-seq, ATAC-seq, etc. Rapid, accurate and memory-frugal preprocessing of single-cell and single-nucleus RNA-seq data. Find bimodal, unimodal, and multimodal features in your data. Ascend is an R package comprised of fast, streamlined analysis functions optimized to address... -
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spyder
The scientific Python development environment
Spyder is a free and open source scientific environment written in Python, for Python, and designed by and for scientists, engineers and data analysts. It features a unique combination of the advanced editing, analysis, debugging, and profiling functionality of a comprehensive development tool with the data exploration, interactive execution, deep inspection, and beautiful visualization capabilities of a scientific package. Spyder’s multi-language Editor integrates a number of powerful tools... -
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Dompdf
HTML to PDF converter for PHP
dompdf is an HTML to PDF converter. At its heart, dompdf is (mostly) a CSS 2.1 compliant HTML layout and rendering engine written in PHP. It is a style-driven renderer, it will download and read external stylesheets, inline style tags, and the style attributes of individual HTML elements. It also supports most presentational HTML attributes. PDF rendering is currently provided either by PDFLib or by a bundled version the R&OS CPDF class written by Wayne Munro. (Some important changes have... -
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Flying Carpet
File transfer between Android, iOS, Linux, macOS, and Windows
Send and receive files between Android, iOS, Linux, macOS, and Windows over ad hoc WiFi. No shared network or cell connection required, just two devices with WiFi chips in close range. Don't have a flash drive? Don't have access to a wireless network? Need to move a file larger than 2GB between different filesystems but don't want to set up a network share? Try it out! -
Our robust pre-built connectors and our no-code, drag-and-drop interface makes it easy and fast to automatically sync vendors, invoices, and invoice payment data between Tipalti and your ERP or accounting software.
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CellTypist
A tool for semi-automatic cell type classification, harmonization
CellTypist is an automated tool for cell type classification, harmonization, and integration. Classification, transfer cell type labels from the reference to query dataset. Harmonization, match and harmonize cell types defined by independent datasets. integration, integrate cell and cell types with supervision from harmonization. CellTypist recapitulates cell type structure and biology of independent datasets. Regularised linear models with Stochastic Gradient Descent provide a fast... -
6
scArches
Reference mapping for single-cell genomics
Single-cell architecture surgery (scArches) is a package for reference-based analysis of single-cell data. scArches allows your single-cell query data to be analyzed by integrating it into a reference atlas. By mapping your data into an integrated reference you can transfer cell-type annotation from reference to query, identify disease states by mapping to healthy atlas, and advanced applications such as imputing missing data modalities or spatial locations. -
7
Themis
Easy to use cryptographic framework for data protection
Cross-platform high-level cryptographic library. Themis helps to build simple and complex cryptographic features easily, quickly, and securely. It’s a perfect fit for multi-platform apps. Themis hides cryptographic details and eliminates popular mistakes. Themis provides ready-made building blocks (“cryptosystems”) for secure data storage, message exchange, socket connections, and authentication. Secure Cell is a multi-mode cryptographic container suitable for storing anything from encrypted... -
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nbcelltests
Cell-by-cell testing for production Jupyter notebooks in JupyterLab
nbcelltests is designed for writing tests for linearly executed notebooks. Its primary use is for unit testing reports. Cell-by-cell testing for production Jupyter notebooks in JupyterLab. To use in JupyterLab, you will also need the lab and server extensions. Typically, these are automatically installed alongside nbcelltests, so you should not need to do anything special to use them. The lab extension will require a rebuild of JupyterLab, which you'll be prompted to do on starting JupyterLab... -
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kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a... -
Define and Deliver Comprehensive Cybersecurity Services. Security threats continue to grow, and your clients are most likely at risk. Small- to medium-sized businesses (SMBs) are targeted by 64% of all cyberattacks, and 62% of them admit lacking in-house expertise to deal with security issues. Now technology solution providers (TSPs) are a prime target. Enter ConnectWise Cybersecurity Management (formerly ConnectWise Fortify) — the advanced cybersecurity solution you need to deliver the managed detection and response protection your clients require. Whether you’re talking to prospects or clients, we provide you with the right insights and data to support your cybersecurity conversation. From client-facing reports to technical guidance, we reduce the noise by guiding you through what’s really needed to demonstrate the value of enhanced strategy.
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10
Coq Jupyter
Jupyter kernel for Coq
Make sure that CoqIDE (8.6 or newer) is installed and coqidetop or coqidetop.opt (coqtop for Coq versions before 8.9.0) is in your PATH. Also, make sure the python command is recognized on your machine. If not you can set up an alias for it e.g. python-is-python3 on Ubuntu. There are a number of convenience improvements over standard Jupyter notebook behavior that are implemented to support Coq-specific use cases. -
11
Scanpy
Single-cell analysis in Python
Scanpy is a scalable toolkit for analyzing single-cell gene expression data built jointly with anndata. It includes preprocessing, visualization, clustering, trajectory inference and differential expression testing. The Python-based implementation efficiently deals with datasets of more than one million cells. -
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marimo
A reactive notebook for Python
marimo is an open-source reactive notebook for Python, reproducible, git-friendly, executable as a script, and shareable as an app. marimo notebooks are reproducible, extremely interactive, designed for collaboration (git-friendly!), deployable as scripts or apps, and fit for modern Pythonista. Run one cell and marimo reacts by automatically running affected cells, eliminating the error-prone chore of managing the notebook state. marimo's reactive UI elements, like data frame GUIs and plots... -
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RevoGrid
Powerful virtual data grid smartsheet with advanced customization
Support Millions of cells and thousands of columns easy and efficiently for fast data rendering. Easy to use. For large organizations managing massive datasets. Performance and scalability to handle even the most complex data tables. Rapid prototyping with intuitive and extendable codebase. Agility to build robust data-driven applications in no time. Quickly build elegant and efficient data grids. Lightweight yet powerful architecture lets you easily scale as your needs grow. -
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vim-jukit
Jupyter-Notebook inspired Neovim/Vim Plugin
REPL plugin and Jupyter-Notebook alternative for (Neo)Vim. This plugin is aimed at users in search for a REPL plugin with lots of additional features. -
15
harmonypy
Integrate multiple high-dimensional datasets with fuzzy k-means
Harmony is an algorithm for integrating multiple high-dimensional datasets. harmonypy is a port of the harmony R package by Ilya Korsunsky. Harmony is a general-purpose R package with an efficient algorithm for integrating multiple data sets. It is especially useful for large single-cell datasets such as single-cell RNA-seq. -
16
pytablewriter
pytablewriter is a Python library to write a table in various formats
pytablewriter is a Python library to write a table in various formats: AsciiDoc / CSV / Elasticsearch / HTML / JavaScript / JSON / LaTeX / LDJSON / LTSV / Markdown / MediaWiki / NumPy / Excel / Pandas / Python / reStructuredText / SQLite / TOML / TSV / YAML. -
17
ESP32-Paxcounter
Wifi & BLE driven passenger flow metering with cheap ESP32 boards
Wifi & Bluetooth driven, LoRaWAN enabled, battery-powered mini Paxcounter built on cheap ESP32 LoRa IoT boards. Paxcounter is an ESP32 MCU-based device for metering passenger flows in real time. It counts how many mobile devices are around. This gives an estimation of how many people are around. Paxcounter detects Wifi and Bluetooth signals in the air, focusing on mobile devices by evaluating their MAC addresses. The intention of this project is to do this without intrusion in privacy: You... -
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React Table
Hooks for building fast and extendable tables and datagrids for React
Build and design powerful datagrid experiences while retaining 100% control over markup and styles. You want your tables to be powerful without sacrificing how they look! After all, what good is that nice theme you designed if you can't use it?! React Table is headless by design (it's just a hook), which means that you are in complete and full control of how your table renders down to the very last component, class or style. React Table is a workhorse. It's built to materialize, filter,... -
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tabulate
Table Maker for Modern C++
tabulate is a header-only library. Just add include/ to your include_directories and you should be good to go. A single header file version is also available in single_include/. Although word-wrapping is automatic, there is a simple override. Automatic word-wrapping is used only if the cell contents do not have any embedded newline \n characters. So, you can embed newline characters in the cell contents and enforce the word-wrapping manually. tabulate allows for fine control over borders... -
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Livewire PowerGrid
PowerGrid generates Advanced Datatables using Laravel Livewire
PowerGrid creates modern, powerful and easy-to-customize Datatables based on the Laravel Livewire library. Tables have basic features activated by default. Extend and customize your table including components (checkbox, action buttons, editable fields), global search feature, column data filters, and data export tool. Table components include feature examples. Just uncomment some code, enter your data, and it works. -
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databooks
A CLI tool to reduce the friction between data scientists
... no JSON manipulation!) Specify paths of notebooks to be checked, an expression or recipe of what you'd like to enforce. databooks will run your checks and raise errors if any notebook does not comply with the desired metadata values. This advanced feature allows users to enforce cell tags, sequential cell execution, maximum number of cells, among many other things. -
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nbmake
Pytest plugin for testing notebooks
Pytest plugin for testing and releasing notebook documentation. To raise the quality of scientific material through better automation. Research/Machine Learning Software Engineers who maintain packages/teaching materials with documentation written in notebooks. -
23
GoNB
GoNB, a Go Notebook Kernel for Jupyter
... be used as a C kernel. It already includes many goodies: cache between cell of results, contextual help and auto-complete (with gopls), compilation error context (by mousing over), bash command execution, images, html, etc. See the tutorial. It's been heavily used by the author (in developing GoMLX, a machine learning framework for Go), but should still be seen as experimental — if we hear success stories from others, we can change this. -
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nichenetr
NicheNet: predict active ligand-target links between interacting cells
... ligand-target links can then be used to infer active ligand-target links between interacting cells. NicheNet prioritizes ligands according to their activity (i.e., how well they predict observed changes in gene expression in the receiver cell) and looks for affected targets with high potential to be regulated by these prioritized ligands. -
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rust_core
A pure Dart implementation of patterns found in Rust's core library
rust_core is a pure Dart implementation of patterns found in Rust's core library, bringing the power of Rust to Dart.