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The SNP ratio test can assess significance of enrichment of significant associations in genome-wide association studies. Tests can be applied to pathways such as KEGG/GO, or user-defined pathways to test specific hypotheses. See link below for more.
GrassrootsWiki – Water Solutions is a free software for the implementation of water supply projects in rural areas. It enables the design and simulation of networks with discontinued water sources using the computational engine of EPANET.
Rensselaer's Optimistic Simulation System, or ROSS, is a parallel discrete event simulator employing optimistic synchronization for multiple processors. ROSS has demonstrated scalability to 131,072 processors. ROSS implements reverse computation.
MonteCarlo portfolio simulation - it can be used as stand-alone command line application - it takes simple XML file needed data as entry and creates simple XML file with output, also this stuff have JNI and ISAPI interface.
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Seems to be closely related to Cellular automaton, except this creates a complex pattern from a mathematical function you input. See website for examples/live applets. This program makes use of an old GPL version of the JEP equation parser.
To help math students visualize the prufer code and/or discover anything new about the prufer code not already present. Examples and live applet on webiste.
Graph polynomials and view prime numbers on a ulam spiral graphing plot. Only integer numbers. Based on an old GPL version of the JEP equation parser. See website for additional examples/live applets Seems to be closely related to Cellular automaton.
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A graphical MatLab framework for estimating the parameters of, modeling and simulating static and dynamic linear and polynomial systems in the errors-in-variables context with the intent of comparing various estimation strategies.
UbikSim is an infrastructure to study complex AmI (Ambient Intelligence) applications which involve a large number of users. It is a MABS (multi-agent based simulation) programmed in MASON and aims to be as descriptive as possible.
The C++ library Geneva allows to run large scale parametric optimization problems. It can run in serial or multi-threaded mode or in a networked environment. The library currently covers Evolutionary Strategies, Genetic Algorithms and mixed scenarios.
This project has been renamed to oooark. Old file releases will still be available here. uvsim is a project focused on enabling algorithm development for unmanned systems. It is being constructed to provide an identical interface to simulations and h
HOT is a package of Matlab and Octave compatible functions that manage thermodynamic data for a wide range of species. Functions calculate almost all the most common thermodynamic quantities of mixtures.
Python users may also want to look at PYroMat at https://chmarti1.github.io/PYroMat/index.html
Open-source CT/ Radiography simulation package. XRaySim works seamlessly with commercial CAD packages and performs highly detailed scan simulations, with virtual X-ray sources and detectors, simulating cracks/ inclusions etc. very easily
SLFCEM stands for San Le's Free Comp. Electromagnetics.
It is a package of scientific software and graphical user
interfaces for use in computational electromagnetics.
It is written in ANSI C and distributed under the terms
of the GNU license.
MC Traffic es un software que modela el tráfico de la Ciudad de México. Escrito principalmente en Python y Pygame, MC Traffic permite usar imágenes descargadas de Google Maps para hacer simulaciones controladas.