Search Results for "java profiler windows" - Page 43
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Showing 4384 open source projects for "java profiler windows"
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TriageTools
Tools for partitioning and prioritizing fastq data
TriageTools is a collection of tools for partitioning raw data (fastq reads) from high-throughput sequencing projects. The tools are designed for basic data management as well for prioritizing analysis of certain subsets. The project wiki contains usage information. -
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (<... -
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PNP is a program for tutorial purposes in the signal processing area. It allows to set, move and remove poles and zeros of an one dimensional digital filter. The program shows different effects of the filter in the frequency domain.
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Saferwater
Helping to improve drinking water safety where there isn't much.
This program helps the user risk assess the raw water quality, aids in determining optimum clarification and filtration, aids in developing an understanding of the disinfection process, and puts it together in an easy to follow HACCP plan, which identifies the critical barriers, monitoring and limits that should be applied to ensure a reduction in the raw water risk profile. The mitigated or residual risk profile is also given (i.e. assuming HACCP plan implementation) -
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RoboStopwatch
Automation scheduler and monitor with stopwatch GUI widget.
This program schedules, launches and monitors any Java Runnable object. Anything you can do from Java, you can schedule and monitor using this program. It includes a nifty stopwatch widget as a metaphor for measuring performance. The monitoring is done via event messages which are displayed in real time in a GUI dialog and stored in a JavaDB database. Any number of tasks (Runnables) can be launched and monitored simultaneously. The user / programmer of the API Jar designs their own... -
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cy2fluxviz
cy2fluxviz : Cytoscape 2 plugin for flux distribution visualization
cy2fluxviz - Cytoscape 2 Plugin for the visualization of flux distributions in networks. Latest releases from https://github.com/matthiaskoenig/cy2fluxviz -
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JinnIde is a plugin that allows using Jinni Prolog, now also hosted here on this site (with open source license!), within the confines of an IDE integrated in JEdit.
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cmotif
A method for mining conditional phosphorylation motifs
Phosphorylation motifs represent position-specific amino acid patterns around the phosphorylation sites in the set of phosphopeptides. The discovery of phosphorylation motifs is a very valuable work in bioinformatics. Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif... -
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expressionCalc
Cross platform Mathematical expression solver
expressionCalc is a Mathematical expression solver. It has a Java implementation (for cross platform) and a C# implementation (for Windows). Support most of the Mathematical functions including log, sin, a sin etc. Implemented based on the expression solving technique of BODMAS. -
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CReST
CReST: The Cloud Research Simulation Toolkit
The Cloud Research Simulation Toolkit (CReST) is a cloud computing simulation platform written in Java. -
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JPIE is an implementation of an Open Source Java to Prolog/Prolog to Java interoperability mecanism based on the Java VM.
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obstbaumpate
Obstbaum Verwaltung
Mit dem Obstbaumpaten lassen sich einfach Obstbäume an Wegesrändern verwalten. -
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A math application written in Java. Its features include 2D and 3D graph plotting, scripting, user-defined variables and functions and skinnable GUI. This project is not maintained at the moment.
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OPEN GENERAL SCIENTIFIC INTERFACES homepage : http://www.opengsi.org
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EDNA
Energy Based Multiple Sequence Alignment (MSA) for Binding Sites
Multiple Sequence Alignment for Transcription Factor Binding Sites using Di nucleotides dependencies and relying on Free Interaction energies between neighbouring DNA bases to stabilise substitution energy of the alignment. http://www.ncbi.nlm.nih.gov/pubmed/23990411 -
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OPTIMA cidoc-crm Semantic Annotation
Semantic annotation of archaeology reports with respect to CIDOC-CRM
The semantic annotation system OPTIMA is the result of Andreas Vlachidis PhD work, (supervised by Prof. Douglas Tudhope, University of Glamorgan, UK). OPTIMA performs the NLP tasks of Named Entity Recognition, Relation Extraction, Negation Detection and Word Sense Disambiguation using hand-crafted rules and SKOS terminological resources (English Heritage Thesauri and Glossaries). The resulted semantic annotations are associated with classes of the (ISO 21127:2006) CIDOC Conceptual... -
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ExpressionOasis is a java based framework for evaluating the various type of expressions like arithmatic, logic expression etc. The framework is flexible enough to define any new grammer rules or operators.
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[DEPRECATED] Gene Ontology
The DEPRECATED legacy location of the GO, see http://geneontology.org
The DEPRECATED legacy of the Gene Ontology project on SourceForge. Please see http://geneontology.org for current software and downloads. -
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wepro
A tiny app for getting the weather.
A Java application designed specifically to display the weather content at a specified location. This applet is designed specifically to utilize a diversity of modern Software Engineering best practices. We plan for this application to be open source, extensible, and reusable. We also plan for the weather app to utilize multiple data providers, or website urls that provide weather information freely, so that a user can chose which provider dynamically during the runtime of the application. -
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Bermuda Text-to-Speech
This project includes basic NLP and DSP techniques for Text-to-Speech
See TTS demo at: http://rslp.racai.ro/index.php?page=tts This is an entirely written in JAVA project which includes a set of tools and methods designed to enable Multilingual Text-to-Speech (TTS) synthesis. We currently support English and Romanian but we will soon train more models and make them available for download. If you want to read more about our other NLP and TTS tools check out http://nlptools.racai.ro. -
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Platform for Annotated Corpora in XML Integrated tool for corpus linguists built on Eclipse, Vex, Subversive, etc. for creating and editing transcriptions and annotations, querying, managing version controlled data, and building a shippable corpus.
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Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
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Japrosim is a java library for both discrete event and continuous simulation. GUI for modeling and automatic code generation are offered. An explanation module is integrated. Models are described in XML and owl for interoperability.
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DimerRemover
Remove adapter dimers from NGS data
This program can be used to count or remove adapter dimers in fastq files. Using a provided adapter sequence, it generates variations of this sequence and stores them in a hash table. The reads can then be directly matched against the hash. It is far more time efficient than doing alignment. -
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The objective of this project is to make available an open-source version of our Multifactor Dimensionality Reduction (MDR) software. MDR is a nonparametric alternative to logistic regression for detecting and characterizing nonlinear interactions.
