Showing 25 open source projects for "file manager windows"

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  • 1
    mzMatch is a Java collection of small commandline tools specific for metabolomics MS data analysis. The tools are built on top of the PeakML core library, providing mass spectrometry specific functionality and access to the PeakML file format.
    Downloads: 6 This Week
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  • 2
    SPINA

    SPINA

    Structure parameter inference approach for endocrine feedback control

    SPINA is software for determining constant structure parameters of endocrine feedback control systems from hormone levels obtained in vivo. The first version of this cybernetic approach allows for evaluating the functional status of the thyroid gland, i.e. thyroid's secretory capacity (GT or SPINA-GT) and sum activity of peripheral deiodinases (GD or SPINA-GD). A second version has been developed for insulin-glucose homeostasis. It delivers the secretory capacity of pancreatic beta...
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    Downloads: 6 This Week
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  • 3
    OxyWitleaf2CSV

    OxyWitleaf2CSV

    Witleaf pulse oxymeter BIN format data decoder.

    The simple program is a Witleaf handheld pulse oxymeter BIN file format data decoder. It reads BIN-files produced by popular professional pulse oxymeters manufactured by Shenzhen Witleaf Medical Electronics Co., Ltd. (like the WIT-S300 shown in the photo on the right) and produces a CSV-formatted output with the extracted data to stdout (gets printed to the console if not directed otherwise). More info on https://github.com/mrKirushko/OxyWitleaf2CSV .
    Downloads: 0 This Week
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  • 4
    SPiCEv2.1

    SPiCEv2.1

    Splicing Prediction in Consensus Element

    SPiCE is no longer maintained. To access the tool's predictions, please use SPiP, accessible at : https://sourceforge.net/projects/splicing-prediction-pipeline/ or https://github.com/raphaelleman/SPiP If you have questions, please contact me to: r.leman@baclesse.unicancer.fr or raphael.leman@orange.fr v2.1.5 (05/2019) + corr (01/2020): Fix bug for linux version v2.1.4 (03/2019): Proxy management (only for Windows version) v2.1.3 (07/2018): correction bug for first 3' ss import vcf...
    Downloads: 0 This Week
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  • 5
    a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.
    Downloads: 0 This Week
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  • 6
    dataMAPPs

    dataMAPPs

    R based pipeline for MHC-associated peptide proteomics (MAPPs) data

    ... reproducible recalculation of results. Consult README file for installation and usage instructions. Further documentation is supplied in PDF format. dataMAPPs is published under GPL license by a team of scientists working for Hoffmann-La Roche AG in Basel, Switzerland. The software is provided as is, to hopefully benefit other researchers. Related Publication in the Journal of Proteome Research: DOI: 10.1021/acs.jproteome.0c00309
    Downloads: 0 This Week
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  • 7
    MVSE

    MVSE

    Estimator of climate-driven, mosquito-borne viral suitability index

    ..., vector and human priors, suitability can be estimated for specific regions, hosts, vectors and viral species. MVSE v0.3 and v1.01r are available for download in this repo. UPDATE Oct/2021: note that a correction has been made to the documentation of v1.01r. The most recent version is the file "MVSE_v1.01r_corrections_to_documentation.zip". No changes have been made to the code itself. Article for original v0.3: https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/2041-210X.132
    Downloads: 2 This Week
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  • 8
    KMWin

    KMWin

    Kaplan-Meier for Windows

    KMWin (Kaplan-Meier for Windows) is a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis. The programme is based on the statistical software environment R and provides an easy to use graphical interface. As an introduction, see http://dx.plos.org/10.1371/journal.pone.0038960#s2.
    Downloads: 0 This Week
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  • 9

    OpenM++

    OpenM++: open source microsimulation platform

    IMPORTANT: ========== Our project home page: https://openmpp.org Our latest source code and release available at: https://github.com/openmpp/main/releases/latest Our documentation available at: https://github.com/openmpp/openmpp.github.io/wiki SourceForge files still exist for historical reason. OpenM++ is an open source microsimulation platform inspired by and compatible with Modgen. OpenM++, compared to its closed source predecessor Modgen, has advantages like portability,...
    Downloads: 0 This Week
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    Securden Privileged Account Manager

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  • 10

    libirt

    The new site is at http://psychometricon.net/libirt/

    The new site is at http://psychometricon.net/libirt/ Library of functions to estimate the items and abilities from the responses of subjects to a questionnaire. The IRT models supported are the logistic model, the multivariate logistic model, the graded model and smoothing by penalization and kernel.
    Downloads: 3 This Week
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  • 11
    EigenMS is a normalization method implemented in R (and older version in Matlab) available as a set of two functions that should be used in a sequence. Please download EigenMS.zip file (latest version). Latest version uploaded in October 2017 has a bugfix for single treatment group normalization. Rescaling has been omitted from 2015. EigenMS utilizes SVD to detect bias trends in the data and eliminates them. EigenMS eliminates effects from known and unknown factors and can...
    Downloads: 8 This Week
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  • 12
    gogadget

    gogadget

    A toolbox for interpretation and visualization of RNA-seq GO analysis

    gogadget is an R package, and can help with the visualization and interpretation of GO enrichment analysis of RNA-seq data. It is developed especially for the use in combination with goseq. The functions that are available in this package are extensively described in the user's guide. To install the package download the "gogadget_2.1.tar.gz" file, open R and install with the following line: install.packages( "C:/your/directory/gogadget_2.1.tar.gz", repos = NULL, type="source...
    Downloads: 0 This Week
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  • 13
    Penobscot River RKM Calculator

    Penobscot River RKM Calculator

    Look up in river distances in the Penobscot River drainage.

    Allows user to input a .csv of UTM coordinates within the Penobscot River basin and calculates in-river distance (in kilometers) from the river's mouth to the locations of interest. The results are output into a new .csv file named yourfilename+RKM.csv. For the purposes of this calculator, river kilometer 0 is located at 516414E 4927755N in UTM Zone 19N, near the southwest corner of Verona Island. Simply download the setup file and run it to install the program. Please contact me...
    Downloads: 0 This Week
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  • 14

    Mobile Tracking Processor

    An easy way to remove noise from mobile telemetry data

    This program takes a .txt input file containing the raw output from a Lotek SRX800 receiver and removes false detections based on a user-provided .csv of tagging data.
    Downloads: 0 This Week
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  • 15
    Maui

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.
    Downloads: 0 This Week
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  • 16

    NOFI ranking

    The Non-Outlier Fragment Ion ranking for enhaced DIA quantification

    ... to represent each fragment ion as a vector. 3) Multivariate outlier detection techniques are used to rank all the fragment ions from each peptide. 4) Several figures are generated (a pdf file) to visualize the effect of the Top-N fragment ions over different indicators. 5) The user can choose the number of top fragment ions per peptide, thereby utilizing the optimal subset of high priority Top-N NOFIs for quantification while excluding the impaired fragment ions.
    Downloads: 0 This Week
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  • 17

    LiDSiM

    LImits of Detection SImulation for Microbes

    .../pmic.201400598/abstract) PLEASE NOTE, it is recommended to read the paper and the readme.txt file before using LiDSiM.
    Downloads: 0 This Week
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  • 18
    RIPE: Regulatory Network Inference
    RIPE (Regulatory network Inference from joint Perturbation and Expression data) is a novel three-step method that integrates both perturbation data and steady state gene expression data in order to estimate a regulatory network. The ripe package is written in R, with additional functionality provided by a MATLAB executable file. The executable file uses a runtime engine called the MATLAB Compiler Runtime (MCR). The executable for different architectures is distributed on this site together...
    Downloads: 0 This Week
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  • 19

    FishingCNV

    Copy number variation (CNV) detection in exome sequencing data

    FishingCNV, a software tool developed at McGill University, is a tool for comprehensive analysis of rare copy number variations in high-throughput exome sequencing data. The inputs are standard coverage files produced by Genome Analysis ToolKit (GATK), and the output is a file containing putative CNVs. The program comes in 2 different releases * GUI version (FishingCNV_X.X.X.zip) * Command line version (FishingCNV_X.X_pipeline) Browse through our files to find the different releases.
    Downloads: 0 This Week
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  • 20
    RawGeno Version 2.0-1 is released! RawGeno is an R CRAN library automating the scoring of AFLP electropherograms. The library includes a graphical user interface to simplify its use. Note that the 2.0-1 version is delivered as a source (*.tar.gz for Linux and Mac users) and as a binary file (*.zip, for Windows users). The installation procedure differs slightly according to your system; but this should remain simple. Have a look at the readme file when you download your new copy from...
    Downloads: 0 This Week
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  • 21
    YANG J. (Yet Another Network Generator)
    YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
    Downloads: 1 This Week
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  • 22
    BigBang/Horizon is a proteomics data analysis pipeline with focus on the shotgun LC/MSMS workflow.
    Downloads: 0 This Week
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  • 23
    ConDEnSE (Confidential Data Enabled Statistical Exploration) will be a web-based environment for statistical analysis of confidential data from various database sources, based on Plone and R, and using the Jackknife method of confidentiality protection.
    Downloads: 0 This Week
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  • 24
    The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.
    Downloads: 0 This Week
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  • 25
    Downloads: 0 This Week
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