Open Source Python Scientific/Engineering Software - Page 85

cl-calc aims to be a simple command line calculator. It can handle precedence unlike a lot of graphical calculators. cl-calc is written in Python and requires PLY (Python-Lex-Yacc).

Codecracker is an automated judge that is used to run coding contests. It is developed by the GNU/Linux Users' Group of NIT Durgapur, India.

HMM based algorithm for dna generation from peptides.

Tools for Medical Physics Department

Since I use GUI tools which only save the molecules to regular zmatrix format. I created a script that would convert the regular format to the special orca format. It is written in python and can be used like this. usage: convert2orcazmatrix.py [-h] -i INPUTFILE [-o OUTPUTFILE]

A collection of pure Python algorithms and data structures

Copenhagen Computed Tomography Toolbox is a collection of applications and libraries for flexible and efficient CT reconstruction. The toolbox apps generally take a set of projections (X-ray intensity measurements) and filter and back project them in order to recreate the image or volume that the projections represent. The project includes both mostly informative CPU implementations and highly efficient GPU implementations. Regular releases are hosted at the Python Package Index.

A drawing program for chemical structure formulas, in the vein of chemtool, BKChem, EasyChem, or Xdrawchem.

Hosted at google code, for latest version please go to: https://code.google.com/p/ctqa-cp/ Automatic image quality analysis of computed tomography images of the CatPhan? phantom. CTQA is a software package to aid in quality assurance of image quality for CT scanners. The software currently only supports analysis of CT-images of the CatPhan600? phantom. Other phantoms may be supported upon request. The purpose of CTQA-cp is twofold: 1) To handle and analyze image sets consisting of a few thousand images that is commonly obtained from image quality assurance protocols on CT scanners. 2) Easily provide results that can be copied to your favorite word or spreadsheet processor, or be saved to disk.

This project seeks to integrate knowledge, methods and data from various disciplines through the design and implementation of a system that allows for communications between languages and different platforms.

Simple application for plotting/processing 1D NMR data. Available for Linux, OS X and Windows and currently reads most Varian and Bruker data. Is capable of producing publication quality plots and exporting data to acsii format.

darc, the Durham Adaptive optics Real-time Controller. For documentation or darctalk client only, select "View all files". For the latest bleeding-edge version, please use: git clone git://git.code.sf.net/p/darc2/code darc (no password required) (this changed May 2013 due to a sourceforge update). If you use darc, please cite with: Basden, A and Myers, R, MNRAS Vol 242, page 1483, 2012

It is a Cross Language Interface Platform that allows different languages to call and execute functions of other languages using xml-rpc as the remote procedure call vehicle.

dbase2rules is a simple program to convert dbase database to rules suitable for shptoosm

ddsweet is collection of tools and routines for science calculation and simulation.

Free-text deidentification tools.

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DEVSimPy is an advanced wxPython GUI for the modeling and simulation of systems based on the DEVS (Discrete EVent system Specification) formalism. Features include powerful built-in editor, advanced modeling approach, powerful discrete event simulation algorithm, import/export DEVS components library and more.

diCal-IBD can be used for predicting identical by descent (IBD) tracts in sequence data. It provides means for calculating the accuracy of the prediction, if the true tracts are available, plotting of the predicted tracts, their TMRCA (time to the most recent common ancestor) and corresponding posterior probabilities, and identification of putative recent positive selection through investigation of average IBD sharing

Diamond is a confocal scanner written in python / Qt4. It combines an intuitive gui with flexible hardware abstraction classes. It is directed primarily towards quantum information processing (QIP) with single NV centers in diamond.

This script can convert raw diffraction images to JPEG files. Support ADSC, MarCCD, Mar345, RAXIS and PILATUS, and can be run on Windows, Linux and Mac OS X.

A laboratory information management system (LIMS) geared towards academic research groups in the life sciences. Written in Python and using the Django framework, you run this software on your own server.