Open Source Python Scientific/Engineering Software - Page 59

Python Scientific/Engineering Software

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Browse free open source Python Scientific/Engineering Software and projects below. Use the toggles on the left to filter open source Python Scientific/Engineering Software by OS, license, language, programming language, and project status.

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  • 1
    This is the worlds first and probably only FLOSS project aimed to create a lowbudget, based on availble technology, cruise missile. No this is not a Joke, its for real. Why? Since no one has tried to do this before and certainly not under the GPL.
    Downloads: 0 This Week
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  • 2
    Project VDW serves as a repository for all things pertaining to Van Der Waerden sequences. Volunteers to run the distributed client, mathematicians to help with theory, and anyone interested in VDW sequences are welcome!
    Downloads: 0 This Week
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  • 3
    Project Galileo at Sourceforge.net aims to provide developers a unique opportunity to develop open source software for an on-line telescope for schools across the UK. See http://www.projectgalileo.org.uk for more details.
    Downloads: 0 This Week
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  • 4
    ProjectQ

    ProjectQ

    An open source software framework for quantum computing

    ProjectQ is an open-source effort for quantum computing. It features a compilation framework capable of targeting various types of hardware, a high-performance quantum computer simulator with emulation capabilities, and various compiler plug-ins.
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  • 5
    Course Project
    Downloads: 0 This Week
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  • 6
    Protein ALignment Optimizer
    Protein ALignment Optimiser (PALO) is a script for the selection and alignment of the best combination of transcripts among orthologous genes. PALO is mainly written in Python, although other programming languages are also implemented (R, Perl...).
    Downloads: 0 This Week
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  • 7
    Protein Cavity Search
    Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.
    Downloads: 0 This Week
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  • 8
    The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
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  • 9
    PepT-IDE is a protein analysis tool that is used for multiple sequence alignment, 3D visualization and displaying protein contact maps for protein sequences and structures. It also has feedback communication between the different views of the protein.
    Downloads: 0 This Week
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  • 10
    This project implements an algorithm for segmenting protein sequences into smaller meaningful blocks. The method is based on the pure statistical approach and it uses an analogy between proteins and natural language.
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  • 11
    Protenix

    Protenix

    A trainable PyTorch reproduction of AlphaFold 3

    Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as “Protenix-Mini,” offering a trade-off between speed/compute cost and predictive accuracy — making structure prediction accessible even in resource-constrained environments. The project also includes support for constraints (e.g., specifying residue- or atom-level contact constraints, or pocket constraints) to guide predictions toward biologically or experimentally relevant conformations, which enhances its utility for tasks like modeling complexes, ligands, or antibody–antigen interactions.
    Downloads: 0 This Week
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  • 12
    Protospacer

    Protospacer

    Rapid gRNA design and validation for CRISPR

    Sign up to our mailing list at http://www.protospacer.com/contact.html. Protospacer allows researchers to build, analyze, and share their own database of CRISPR target-sites. This enables the development of custom libraries and helps to transfer the CRISPR technology to new organisms. Each Protospacer database is a simple catalogue of all possible Cas9 target-sites within a given FASTA sequence, i.e. all NGG/NAG sites. Protospacer then allows the user to sub-select targets from the database by gene ID, by exon/intron/UTR location, by sequence similarity, or by genomic co-ordinate. From here, users are able to evaluate potential off targeting, to export results in FASTA format or tabulated (e.g. for Microsoft Excel), and to connect to the Integrative Genomics Viewer (IGVref) and view target-sites in the context of genomic annotations, amino acid translations, and HT-Seq data (for off-target validation). We provide online video tutorials and a toy database from our main website.
    Downloads: 0 This Week
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  • 13
    The EU Provenance project developed an architecture to document a data generating process in a distributed environment. The Python Client Side Library (CSL) enables the development of provenance-aware Python applications.
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  • 14
    Network grep, on steroids
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  • 15

    Pugsly

    Command-line, PubChem PUG client, written in Python

    Command-line, PubChem PUG client, written in Python; developed for Linux
    Downloads: 0 This Week
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  • 16

    Pugsly PubChem Client

    Command-line, PubChem PUG client, written in Python

    Client to the PubChem Tool (PCT), The Power User Gateway (PUG). Written in Python and developed for use with Linux.
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  • 17
    Pulse Programmer
    A programmable signal generator and RF synthesizer for scientific experiments, especially quantum computing and quantum information processing. It includes hardware, firmware, software, and documentation, all under an open source license.
    Downloads: 0 This Week
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  • 18
    Computational electromagnetics software. Uses surface Method of Moments, enhanced by using the Multilevel Fast Multipole Method. Code is parallelized and runs on laptops, desktops and clusters. The code precision is adjustable, it is fast and uses little memory. CFIE is used for closed surfaces, and EFIE for open PEC surfaces. Can function on GMSH, GiD and ANSYS meshes.
    Downloads: 0 This Week
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  • 19
    Py-Tightvnc
    A simple and powerful interface for Tightvnc Server, written in python and developed with glade.
    Downloads: 0 This Week
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  • 20

    Py3DN

    Morphometric analysis and visualization of the 3D structure of neurons

    Py3DN, is an open-source solution providing innovative tools to analyze 3D data collected with the widely used commercial system Neurolucida (MBF). It allows the construction of mathematical representations of neuronal topology, visualization and a variety of morphometric analysis on the neuronal structures. Above all, it provides a flexible environment where new types of analyses can be easily set up allowing total freedom to test new hypotheses. The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z
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  • 21
    (Historical) PyAcad makes Python available as a scripting language to AutoCAD/IntelliCAD. A builtin module "ads" allows to access and control most aspects of AutoCAD/IntelliCAD from Python programs.
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  • 22
    PyAero

    PyAero

    CFD Toolkit

    PyAero is a toolkit developped at andheo for CFD software : post-processing, curve generation, … Currently PyAero focuses on ONERA's code "Cedre". PyAero is powered by Qt, Python, PySide, enthought and pyLot.
    Downloads: 0 This Week
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  • 23
    Ant foraging simulation. Ants can be programmed using Python. Actual programme writtenin c++ using SDL
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  • 24
    With this Python module (based on C++ code) it is possible to create a Brain Comp. Interface (BCI) and herewith to get EEG data online and evaluate the data while receiving it. - Up to now, this tool relies on the Brain Vision Rec. as EEG software -
    Downloads: 0 This Week
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  • 25

    PyBrella

    Python script to automate umbrella sampling with AMBER

    PyBrella is a script designed to automate the umbrella sampling process, using the AMBER molecular dynamics package.
    Downloads: 0 This Week
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