Open Source Python Scientific/Engineering Software - Page 53

ExoPlanet provides a graphical interface for the construction, evaluation and application of a Machine Learning model in predictive analysis. With the back-end built using the numpy and scikit-learn libraries, as a toolkit, ExoPlanet couples fast and well tested algorithms, a UI designed over the Qt4 framework, and graphs rendered using Matplotlib to provide the user with a rich interface, rapid analytics and interactive visuals. ExoPlanet is designed to have a minimal learning curve, allowing researchers to focus on the applicative aspect of Machine Learning rather than their implementation details. It provides algorithms for unsupervised and supervised learning, which may be done with continuous or discrete labels. Post analysis, the toolkit further automates building the visual representations for the trained model.

experimaestro is an experiment manager, and is composed of (1) a job scheduler that handles dependencies and locking (2) a modular experiment description framework, that allows easy description of the various parts of an experiments.

FABS is a program designed to run a fluorescence/absorption spectrometer on Windows. The program analyzes spectra and provides graphs and data files. Users may choose to input video files from cell phones or other cameras, still images, or even live streams of video from webcams. FABS can perform any necessary calibration and image preprocessing. Experienced users have a number of more advanced options such as background subtraction, adjustments for nonlinearities in detector response, and graph smoothing. FABS was designed with students in mind, as a way to help high schoolers and undergraduates learn about spectroscopy without paying for expensive equipment and software. Accompanying this software is a hardware design, which can be used as a bare-bones spectrometer that will provide quantitative absorption and fluorescence emission spectra at an extremely low cost. It uses only materials that many people can find around their home.

FAST is an Analysis and Simulation Toolbox (FAST) for Fuel Cells (FC) FAST-FC is the doctorate work of David B. Harvey and was developed with support from the U.S. DOE, Ballard, and Queen's University. Derivative works of FAST-FC include FC-APOLLO which is a forked branch of this project intended to capture the code state at the exit of the funded DOE project. FAST-FC is the open and active community branch. FAST-FC is developed and maintained by the original creator and developer, David B. Harvey. Features of FAST-fc include transport of gases and liquids, multi-step reaction kinetics, transient and steady state operation for performance and durability, and scalable dimensionality from 1D - 3D domains. Future development work is on-going in FAST-fc and our strategic development schedule includes membrane degradation, improved liquid water transport models through the application of pore networks, and extension to stack-level simulation.

FAUNUS is an object oriented class library for molecular simulation, written in C++. It contains routines and utility programs for, Metropolis Monte Carlo sampling (NVT, NPT, NmuT ensembles), Macromolecules, Proton Titration, Widom Analysis etc.

2D finite element program for solving electromeagnetic structure

FEVal, the Finite Element Evaluator written in Python, provides easy conversion for many Finite Element data formats (both binary and ascii). Mesh modification is very easy. Values of model results can be accessed given coordinates in physical space.

FIDe is a software-based fault injector designed to validate Fault-Tolerant mechanisms and techniques used by applications. It was first used to measure database recovery coverage and costs, but can be used to test and validate ordinary applications.

FONZIE is a bioinformatic tool written in Python developed for the genetic cartography speciality. FONZIE allow as well to find markers on a set of sequences than to find associate oligonucleotides. http://www.biomedcentral.com/1756-0500/3/322/abstra

Programas com ferramentas úteis para geólogos, como conversão de notações de medidas estruturais (ConvMedStrut) e conversão entre mergulho aparente e mergulho verdadeiro (ConvMergApVerd).

FXPyTurns-n-Layers is a graphical transformer and induction coil design aid. The application performs the physical design of the coils for transformer and induction coils to determine: the length/weight of wire required to wind a coil with the specified

FaceIn! is a face recognizing log in application for Linux. You will never have to enter your password anymore! Just show your face to your camera and let the system recognize you and take you to your desktop!

FAIRChem is a unified library for machine learning in chemistry and materials, consolidating data, pretrained models, demos, and application code into a single, versioned toolkit. Version 2 modernizes the stack with a cleaner core package and breaking changes relative to V1, focusing on simpler installs and a stable API surface for production and research. The centerpiece models (e.g., UMA variants) plug directly into the ASE ecosystem via a FAIRChem calculator, so users can run relaxations, molecular dynamics, spin-state energetics, and surface catalysis workflows with the same pretrained network by switching a task flag. Tasks span heterogeneous domains—catalysis (OC20-style), inorganic materials (OMat), molecules (OMol), MOFs (ODAC), and molecular crystals (OMC)—allowing one model family to serve many simulations. The README provides quick paths for pulling models (e.g., via Hugging Face access), then running energy/force predictions on GPU or CPU.

Tools for comparative sequence analysis. Includes FamilyRelations (GUI) and a C++ toolkit/Python wrapper for doing fixed-width-window analyses.

Famms is a Python module for applying the method of manufactured solutions (MMS) to PDE simulators written in C/C++, Fortran, and Python.

This is a suite of tools for farmers it includes local market prices for their sales, weather reports, other features useful to farmers.

These scripts written in Python allow you to convert fasta files into multifasta file and vice versa.

Fastq-Fasta Converter is a desktop application that converts Fastq files into Fasta files.

A database and a web front end for physiologic data on animal feeding, developed with PostgreSQL and Django at NESCent (http://www.nescent.org) for Mammalian Feeding Working Group (http://www.feedexp.org). Current development of the codebase is on Github at http://github.com/NESCent/feedingdb.

An object-oriented partial differential equation (PDE) solver, written in Python, based on a standard finite volume approach and includes interface tracking algorithms. *WARNING* The project is no longer using Sourceforge to maintain its repository.

Fielddata Mgr Overview This is a Python program, which means that one must install the open source freely available Python interpreter and a few required also open source, freely available modules that support the functionality of the program. The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main server. Each day, the .RAW file is copied to the appropriate chiefs folder and when Fielddata Mgr is run, or the reload button is clicked, all .RAW files are listed along with a long list of all job folders existing in a designated location, and a short list of frequently accessed jobs that are selected from within the long list. When a .RAW file is selected, the contents are read, interpreted, and the results displayed within the program window. For remaining information please read the info sht.

FillWorks is python based standalone scientific tool for cut and fill bidimensional studies over terrain profiles. You'll be able to plan a train or road line and get the visual output on it. Complete, with user guide.

This is Python based program for analysis of radiochromic films. Similar to filmQAPro, but free. It can be used to study Gafchromic EBTX films.

[NOTICE!] FingerID since version 1.4 will be hosted on github: https://github.com/icdishb/fingerid A metabolite identification software using tandem mass spectrometry and kernel methods. The related paper can be found at http://bioinformatics.oxfordjournals.org/content/early/2012/07/18/bioinformatics.bts437.abstract. Now it supports unix/linux like system.

Software to let Finn control a computer