Open Source Python Scientific/Engineering Software - Page 53

The Poll and Command Service (PCS) project aim is to develop a management and interfacing system for the Khepera III and Koala robots.

This software has moved to http://www.poissonboltzmann.org/

Read single-band NASA PDS (Planetary Data System) Image files in Python. Query header information and extract binary image data in a format suitable for PIL (Python Imaging Library). Works for Pathfinder and Mars Exploration Rover images, maybe others.

PEng is a tool for performing and documenting engineering calculations. It can handle units and generates output via Latex.

Esse projeto é uma reimplementação dos processadores hipotéticos descritos no livro "Fundamentos de Arquitetura de Computadores" de Raul Fernando Weber, usados em diversas faculdades no sul do Brasil, incluindo o Instituto de Informática da UFRGS.

The Microchip PICkit 2 has the ability to act as a logic analyzer and I/O probe. This project provides a reverse engineered libusb user space device driver and GUI to provide this functionality for users of unsupported operating systems.

PLAtypus's goal is to give people with poor communications skills an opportunity to learn and improve. With the guidance of a tutor, people will be able to learn new signs, sounds or icons and associate them with real life concepts that will, hopefully, help them to better express they needs.

PLASMAKIN is a package to handle physical and chemical data used in plasma physics modeling and to compute gas-phase and gas-surface kinetics data: particle production and loss rates, photon emission spectra and energy exchange rates.

PLC Technology! is about Automotion, Programmable Logic Controller, IIoT...

This software tool assists in the identification of PLGS identified peptides that provides high quality HDX information. The output file is formated so it can be directly imported into DynamX. This tool requires that the user has python installed.

PLWM is a Python package, containing classes suitable for implementing a window manager. PLWM is also a window manager, using the PLWM package.

PPLine is a Python-based suite aimed to process raw RNA-seq or Exome-seq data. PPLine provides: - read mapping (STAR/Tophat2/bowtie/bowtie2), including novel splice junsctions discovery - gene and transcript expression estimation (HTSeq-count/Cufflinks) - SNP calling with BQSR and indel realignment (samtools/GATK) - variant annotation (Annovar) - novel transcripts discovery (Cufflinks) - predicting proteotypic peptides and creating ref/alt proteins fasta-database - integration of the results

Petoron Quantum Standard (PQS) v1.2 A fully custom, offline encryption standard - built entirely from scratch. PQS v1.2 is a minimalistic, self-contained encryption engine for secure file protection, with zero reliance on external cryptographic libraries. PBKDF2-HMAC-SHA256 (200k iterations, adjustable) for password hardening. Key separation via BLAKE2s - independent keys for encryption and MAC. BLAKE2s-MAC authentication - 16-byte tag, any modification = instant rejection. Streaming keystream generator - secure, large-scale XOR without key reuse. Fake padding (HEAD/TAIL) - obfuscates binary boundaries and payload structure. Precise size encoding - restores original payload exactly. Supports files up to 128 MB per encrypted block. No dependencies, fully offline, cross-platform Python implementation. PQS is designed for high-assurance security, full auditability, and deterministic offline use - without unnecessary complexity. https://github.com/01alekseev/PQS

Petoron Time Burn Cipher (PTBC) A promising cipher based on self-destruction of time, complete absence of traces and impossibility of key selection. Key features: AES-CFB encryption with per-file IV Argon2id key derivation with 256MB RAM resistance TTL (time to live) built directly into the encrypted file HMAC-SHA512 integrity verification Self-deleting mode (--autowipe) and one-time access marking (--onetime) No file metadata, no recovery, no password resets Philosophy: If you lose the password - it’s over. If time expires - it’s gone. PTBC doesn’t forgive, doesn’t forget, and doesn’t leak. https://github.com/01alekseev/PTBC

PTools : a C++/Python library for macromolecular docking

The Python Unified Membrane Analysis Toolkit is a suite of python tools for analyzing molecular dynamics simulations of membranes.

PYroMat brings the thermodynamic properties of nearly 1,000 species to Python users with only a few keystrokes. Entropy, enthalpy, specific heats, inverse functions, and more are available from ideal gases, their mixtures, and multi-phase steam. Accurate, fast, and tested; PYroMat is the open-source solution for students, researchers, design engineers, and tinkerers everywhere who need thermodynamic properties.

Paddle Quantum (量桨) is the world's first cloud-integrated quantum machine learning platform based on Baidu PaddlePaddle. It supports the building and training of quantum neural networks, making PaddlePaddle the first deep-learning framework in China. Paddle Quantum is feature-rich and easy to use. It provides comprehensive API documentation and tutorials help users get started right away. Paddle Quantum aims at establishing a bridge between artificial intelligence (AI) and quantum computing (QC). It has been utilized for developing several quantum machine learning applications. With the PaddlePaddle deep learning platform empowering QC, Paddle Quantum provides strong support for the scientific research community and developers in the field to easily develop QML applications. Moreover, it provides a learning platform for quantum computing enthusiasts.

Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. FEEDBACK HIGHLY APPRECIATED!

PGAF provides a framework tuned, user-specific genetic algorithms by handling I/O, UI, and parallelism. It is designed for optimizing functions that take a "very long time" to evaluate.

PCSIM is a tool for distributed simulation of heterogeneous networks composed of different model neurons and synapses. The development of PCSIM was supported by the FACETS EU project.

ParamIT is a toolkit aiding the development of molecular mechanical force field parameterization of small, drag like, molecules within CHARMM general force field (CGenFF) protocol. The developed toolkit helps the researchers in following ways: 1) automating the creation of multiple input files for quantum and molecular mechanics programs, 2) automating the output analysis and 3) substitute the use of full MM programs with a faster specialized one. The developed tools include: 1) generator of molecule-water complexes with graphical user interface (GUI), 2) semi-automatic frequency analysis using symbolic potential energy distribution matrix and comparison of optimized internal coordinates, 3) GUI for charge fitting with three modes: manual, Monte-Carlo sampling or brute force, and 4) GUI for dihedral terms fitting. The usage of these tools decreases the labor effort, lowers manual input errors and reduces the time needed for accurate MM parameterization efforts.

Parasol is a python framework in which mathematical models can be investigated parametrically. It enables easy optimization, sensitivity study, and visualization. Output is in plain text, HTML, and Microsoft Suite files (Excel, Word and PowerPoint).

Parser - синтаксический анализатор. Plotter - графопостроитель.

ParticleStats is software for analysing tracked particles from RNA Localization experiments. Analysis is performed on the X and Y coordinated of the tracked RNA particles