Search Results for "web based"
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Showing 232 open source projects for "web based"
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RefDB is a reference database and bibliography tool for SGML, XML, and LaTeX documents, sort of a Reference Manager or BibTeX for markup languages. It is portable and known to run on Linux, Free/NetBSD, OSX, Solaris, and Windows/Cygwin.
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bbbike
An information system for cyclists in Berlin and Brandenburg
A bike information system for cyclists in Berlin and Brandenburg (Germany) with a map view and a routing engine. There's a graphical interface (based on Perl/Tk) as well as an Web interface. Source code may be found at Github: https://github.com/eserte/bbbike/ -
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Manatee is a web-based gene evaluation and genome annotation tool. Manatee can store and view annotation for prokaryotic and eukaryotic genomes.
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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A header file (cexcept.h) that provides Try/Throw/Catch macros similar to those available in C++ for error handling.
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metaf2xml
Parse and decode METAR, TAF, SYNOP, BUOY, AMDAR and write data as XML
...The extracted data can be written as XML or passed to a user-defined function (all done in Perl). It also provides XSLT style sheets to convert the XML to plain language (text, HTML), or XML with different schemas. A web-based (CGI) user interface can be used to download and display up-to-date weather data from NOAA, Ogimet, and other sources. -
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BIGSdb
Software for storing and analysing bacterial sequence data
The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. ... -
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mers
Portable software and data related to Mersenne numbers
Portable software related to Mersenne numbers. Useful to automate certain tasks related to GIMPS (www.mersenne.org) for computers that cannot run the GIMPS software for whatever reason. Much of the code has been in use since 1990 or so by a few people. The project web site at https://mers.sourceforge.io/mersenne.html has data about Mersenne numbers from many people generated by this and other software, notably from the GIMPS project. -
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Krishnamurti's Book of Life D.Thoughts
Jiddu Krishnamurti's Book of Life|Libro de la Vida
FREE distribution of the JAVA-XML multiplatform e-book about Jiddu Krishnamurti's Book of Life (a witty daily cookie-like reflection). Ahora, lea diariamente los pensamientos de Krishnamurti en castellano- Obtenga una agenda gratis. -
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Systems Biology Markup Language (SBML)
A file format for exchanging computational models in systems biology
The Systems Biology Markup Language (SBML) is an XML-based description language for representing computational models in systems biology. Visit the project web site to learn more. -
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Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
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The Interactome-Transcriptome Integration (ITI) algorithm allows the analysis of gene expression data by superimposition of a large scale protein-protein interaction data (human interactome) over several gene expression datasets. ITI extracts regions in the interactome with differentiating expression over two conditions. These subnetworks can that be used to build a generalizable and stable genomic signature for genomic/cancer classification.
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Design PCR primers from DNA sequence. Widely used (190k Google hits for "primer3"). From mispriming libraries to sequence quality data to the generation of internal oligos, primer3 does it. C&perl. Developers/testers/documenters needed.
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hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
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This is software to create web dictionaries, esp. for Esperanto like Reta Vortaro (http://reta-vortaro.de). A dictionary is made from articles written in a special XML dialect by transformations using XSLT, ant and some Java code.
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Earth Enterprise
Google Earth Enterprise - Open Source
...The system is composed of three main components: Fusion, which processes and integrates imagery, vector, and terrain data into unified map layers; Server, which hosts the resulting globes or maps via Apache or Tornado-based web servers; and Client, which includes the Google Earth Enterprise Client (EC) for 3D visualization and the Google Maps JavaScript API V3 for 2D viewing. Designed for enterprise, research, and government use, it allows for secure, scalable deployment of geospatial visualization systems within private infrastructure. -
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New Debian package available 30th April 2021, lots of bugs corrected. Simple system for displaying civic features, opportunities and problems on a rasterised map. Currently to map 'informal gardening' and foraging for useful items on the street. Simple to set up and use. Can be parametrised for specific usage. Installation description, to be expanded in: https://sourceforge.net/p/datamap/wiki/Installation/
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chklinks is a non-threaded Perl link checker. It helps finding broken links on your website. It does not raises many simultaneously connections for its job, run out of the resources and crash your system in a moment.
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C-squares
Concise spatial query and representation system (c-squares)
C-squares is an easily implemented method for storage, querying and display of spatial data locations, based on a hierarchical, grid-based representation of the Earth' surface. Source code for encoding, decoding, mapping, etc. is provided via this site. Additional support is available by contacting the system developer, Tony.Rees@marinespecies.org; see also the c-squares home page at http://www.cmar.csiro.au/csquares/ . -
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TaxOnTree
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software... -
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MetaErg
Metagenome Annotation Pipeline
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub... -
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Bridge Designer and Contest
A national virtual bridge engineering contest for kids of all ages.
Bridge Designer has been replaced with the web app ASCE Bridge Designer, Cloud Edition. Binaries posted here will go away on 1 July 2026. The source repo will remain. A national virtual bridge engineering contest with prizes for middle and high school kids, grades 6 to 12, but anyone can enter for fun. Based on the award-wining Bridge Designer client software, now open source through this project. -
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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RaspiVMC
VMC control with a Raspberry PI
Remote control of a Storkair/sehnder mechanical ventilation system (VMC) via a Raspberry Pi. This allow for the integration of the VMC in a domotica system (providing compatible domotica software)
