Search Results for "linux terminal"
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Showing 97 open source projects for "linux terminal"
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Monte Carlo eXtreme (MCX)
Physically accurate and validated GPU ray-tracer
MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel. -
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FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
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Depth Conversion uncertainty analysis for the oil and gas industry. Incorporates cross-validation and multiple iterations.
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idcp
Control program for Undulators at the BESSYII Synchrotron
The BESSY II synchrotron is operated at the Helmholtz-Zentrum Berlin. Undulators are moveable magnetic structures that force the electron beam on a curved trajectory creating synchrotron radiation. This project is the undulator control software. -
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FullSSR
SSR detection and primer designing software
Traditional methods for isolation of microsatellites (SSRs) are often expensive and time consuming. Nowadays is easier and cheaper to obtain genomic data from next generation sequencing. Then, at least two software need to be applied in order to obtain SSR primers of SSR flanking sequences for PCR assays. Here we propose new software that allows the user to work with several sequences for PCR primer design in one step. -
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contools
console tools, batch scripts, shell scripts, shell tools, utilities
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UrJTAG aims to create an enhanced, modern tool for communicating over JTAG with flash chips, CPUs, and many more. It is a descendant of the popular openwince JTAG tools with a lot of additional features and enhancements.
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autoplot
Simple Gnuplot automation and plot conversion tool.
Autoplot is a simple Perl script to plot Gnuplot files with simple dependency checking and conversion of the plots to different formats using rsvg-convert. The Gnuplot scripts must plot to a SVG terminal and output the result to STDOUT for the script to work as intended. The script reads all .gnuplot files in the working directory and creates SVG plots from them in svg subdirectory. SVG plots can be converted to PDF and PNG format, while the resulting files are placed in pdf and png... -
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PINCIS
PINCIS.pl is a Perl bioinf. script to analyze PICS data
PINCIS.pl (PIcs N-/C-terminal Inferred Substrates perl script) is a small, command line tool to designate and analyze PICS (Schilling et al., Nat. Protocols, 2011) data to gain the prime and non-prime site specificity of proteases. Thus, the script filters given peptide lists for library peptides (generated by the digestion protease in the proteomics workflow rather then the protease of interest) and prints out lists of inferred N- and C-terminal cleavage window extensions which can be... -
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chklinks is a non-threaded Perl link checker. It helps finding broken links on your website. It does not raises many simultaneously connections for its job, run out of the resources and crash your system in a moment.
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Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
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MMAP
Multi-core Method for Analysis Pipelines
For more information, please see home page. -
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guglinatts-en
Guglina TTS, special edition: in English (guglinatts-en)
Guglina TTS, special edition: in English (guglinatts-en), is a voice synthesizer originally designed for Brazilian Portuguese. Uses the Google Translate text-to-speech API. Read screens for the visually impaired. Transforms text into audio, allowing blind or low-vision people to access content displayed on the screen. Although the main target audience for text-to-speech conversion systems - such as Guglina TTS EN - is people with visual impairment, this type of program can be used by people... -
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guglinatts-it
Guglina TTS, edizione speciale: in italiano (guglinatts-it)
Guglina TTS, edizione speciale: in italiano (guglinatts-it), è un sintetizzatore vocale originariamente progettato per il portoghese brasiliano. Utilizza l'API di sintesi vocale di Google Traduttore. Leggi gli screenshot per gli ipovedenti. Trasforma il testo in audio, consentendo a persone non vedenti o ipovedenti di accedere al contenuto visualizzato sullo schermo. Sebbene il pubblico di riferimento principale per i sistemi di conversione da testo a voce - come Guglina TTS IT - sia... -
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scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
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CABBaGe
Classification Algorithm Based on a Bayesian method for Genomics
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Panacea
PAN And Core-gEnome Analysis
A tool to calculate the Pan-Genome of a set of annotated genomes -
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LMAP
Lightweight Multigene Analyses in PAML
Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: https://doi.org/10.1186/s12859-016-1204-5 -
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HitKeeper is a database application for use in BioInformatics. It deals with "hits" (predicted features) on biological sequences (protein, DNA), handles incremental updates effectively, supports taxonomy, and provides original query tools.
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This project has come to an end. If you want, you can download the sources and continue from there. The repository will be wiped clean by the end of 2017.
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Lascer liefert zu einer Menge binär klassifizierter Attribut-Vektoren eine Menge von Regeln zur Beschreibung der Klassen. Die Regeln können auch mathematische Funktionen enthalten, deren Art vorgegeben werden kann.
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Placnet
Placnet project
Plasmid Constellation Network project. Placnet is a new tools for plasmid analysis in NGS projects. Placnet has been written in Perl. It's been optimized to work with Illumina sequences but it also works with 454, Iontorrent or any of the actual sequence technologies. The input of placnet is a set of contigs and one or more SAM files with the mapping of the reads against the contigs. Placnet obtains a set of files, easily opened on Cytoscape software or other network tools. Please... -
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MGSyn
MGSyn - Automatic Synthesis for Industrial Automation
MGSyn (Model, Game, Synthesis) is an open-source tool which integrates game-based synthesis into model-driven development for industrial control and automation. It is served for research and educational purposes. MGSyn has been originally developed by Department of Informatics (Unit 6), TU München and fortiss GmbH and is now maintained by fortiss GmbH. The software is released under the GNU General Public License Version 3.0 (GPLv3). Please download the tutorial for step-by-step... -
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EvalMSA
Perl-based tool for evaluating multiple sequence alignments
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Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.
