Search Results for "linux engineers toolkit"
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Showing 37 open source projects for "linux engineers toolkit"
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Th3inspector
Best Tool For Information Gathering
...The project provides simple install wrappers for Linux, Android/Termux and even instructions for Windows (Perl + CPAN modules), and includes helper scripts to update or install dependencies automatically. The repository is actively packaged as versioned releases in the README (current noted version 1.9) and is distributed under an MIT license. -
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Ham Radio Control Libraries
Library to control radio transceivers and receivers
The Hamlib project's purpose is to develop flexible and portable shared libraries that offer a standardized API to control any radio oriented equipment through a computer interface. -
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CTK
CLIP Tool Kit (CTK)
CTK (CLIP Tool Kit) is a computational biology toolkit implemented in Perl, designed for analyzing CLIP sequencing data. It offers a streamlined pipeline from raw reads through peak calling and motif discovery. -
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hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
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silico
Libraries and scripts for molecular modelling written in Perl
A perl molecular toolkit designed to assist in general molecular modelling activities. Silico provides file format conversion, molecular manipulation and analysis and a simple way to write wrapper scripts around other preexisting software packages. -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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IRST LM Toolkit
A toolkit for language modeling.
IRSTLM is no more supported on SourceForge. Please visit the new IRSTLM official website: http://hlt-mt.fbk.eu/technologies/irstlm IRSTLM: A tool for the estimation, representation, and computation of statistical language models. IRSTLM, the IRST Language Modeling Toolkit, features algorithms and data structures suitable to estimate, store, and access very large n-gram language models. Our software has been integrated into a popular open source Statistical Machine Translation... -
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The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
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GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
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Defind
detect genomic deletions using NGS data
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ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.
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An integrated bioinformatics toolkit for analysis of ChIPseq data from the Illumina DNA sequencing platform. Includes filtering, quality control, simulation, peakfinding, visualization, and comparison of samples.
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PHPXref is a developers tool, written in Perl, that will cross reference and extract inline documentation from a collection of PHP scripts. It generates simple HTML output suitable for browsing offline.
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Free software tools released by the Virtual Institute for Microbial Stress and Survival, including WIST (a toolkit for LIMS development) and PCAPStore (a file repository for LIMS).
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PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".
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Byte Investigator
Scripts for parsing and general use in Computer Forensics - Octane Lab
O projeto Byte Investigator do Octane Labs nasceu com a finalidade de se ter um kit de ferramentas (scripts perl) de parsing de varias estruturas do ambiente Windows (arquivos e estruturas dos file systems). Estas ferramentas poderão ser utilizadas no cotidiano dos profissionais e pesquisadores de segurança nas tratativas de resposta a incidentes de Segurança de Informação e Computação Forense. A técnica de parser ou parsing consiste em usar um programa que detalhe as informações contidas em... -
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A logging shell that can log commands from a shell. Designed to act as an automated lab-book for people that conduct experiments in their standard shell environments. Users can log and re-run experiments with little/no manual effort or interference.
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openEAR is the Munich Open-Source Emotion and Affect Recognition Toolkit developed at the Technische Universität München (TUM). It provides efficient (audio) feature extraction algorithms implemented in C++, classfiers, and pre-trained models on well-known emotion databases. It is now maintained and supported by audEERING. Updates will follow soon.
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ReAlignerV is an alignment tool focusing on genomic nucleotide sequences upstream of genes. ReAlignerV integrates TRANSFAC(R) Match(TM) results to detect the conserved TFBSs. ReAlignerV is robust against transposable element insertions.
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GBTiler, a Gerber circuit board tiling program allows engineers, electronics hobbyists and other users with Gerber RS274X format files to "tile" or combine separate Gerber files -- circuit boards -- into a single, valid Gerber formatted file.
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This command-line tool will help people who want to compare 2 csv-like files, and get a detailed report on which rows and fields differ between both files. An awk-based version and Perl Version is currently available.
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Perl Microarray toolkit, providing object-oriented methods for the manipulation, management and analysis of microarray data.
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Biospha is a suite of perl scripts based on bioperl toolkit intended to help researches to manage large sequence file. With BIOSPHA you can classify each sequence according to the NCBI taxonomy. You also can get all taxonomic info from a GI or Taxid.
