Showing 15 open source projects for "gpu-g"

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  • 1
    RAFTS³G

    RAFTS³G

    Rapid Alignment Free Tool for Sequences Similarity Search to Groups

    ... – PR % Brazil % % Developers and colaborators: % Roberto T. Raittz % Bruno T. L. Nichio % Ricardo A. Vialle % Aryel M. R. de Oliveira % Camilla R. Pierri % Leticia G. C. Santos % Alexandre Q. Lejambre % Nilson A. R. Coimbra % Dieval Guizelini % Jeroniza N. Marchaukoski % Fabio de O. Pedrosa
    Downloads: 0 This Week
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  • 2
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 70 This Week
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  • 3
    Eventer

    Eventer

    Rapid, unbiased, reproducible analysis of synaptic events

    ... procedures. The software is coded in MATLAB, but has been compiled as standalone applications for Windows, Mac and Linux. Please visit the official Eventer website for more info https://eventerneuro.netlify.app/ While the paper is in preparation, please cite as; Winchester, G., Liu, S., Steele, O.G., Aziz, W. and Penn, A.C. (2020) Eventer. Software for the detection of spontaneous synaptic events measured by electrophysiology or imaging. http://doi.org/10.5281/zenodo.3991676
    Downloads: 1 This Week
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  • 4

    LINE Solver

    Queueing Theory Algorithms

    LINE is an open-source software package to analyze queueing models via analytical methods and simulation. The solver is available for MATLAB, Java (alpha version) and Python (alpha version). LINE features algorithms for the solution of open queueing systems (e.g., M/M/1, M/M/k, M/G/1, ...), open and closed queueing networks, and layered queueing networks. Additional details are available on the project website: http://line-solver.sf.net.
    Downloads: 0 This Week
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    Better time tracking for projects, billing, and payroll

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  • 5
    MolDynSim

    MolDynSim

    TrajLab subproject: Molecular dynamics simulations in MATLAB

    This is a subproject of TrajLab which is probably the first attempt for a general purpose molecular simulation package in MATLAB. While the authors are aware that many other highly specialized and highly optimized program packages for the same purpose exist (e. g. AMBER, GROMACS, NAMD, etc.), the MATLAB environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in research...
    Downloads: 0 This Week
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  • 6
    MetaStable

    MetaStable

    TrajLab subproject: Metastability analysis of molecular conformations

    This is a subproject of TrajLab which is probably the first attempt for a general purpose molecular simulation package in MATLAB. While the authors are aware that many other highly specialized and highly optimized program packages for the same purpose exist (e. g. AMBER, GROMACS, NAMD, etc.), the MATLAB environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in research...
    Downloads: 0 This Week
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  • 7

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    detectMITE - a MATLAB-based tool for detecting miniature inverted repeat transposable elements (MITEs) in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectMITE? Ye C, Ji G, Liang C (2016) detectMITE: A novel approach to detect miniature inverted repeat transposable elements in genomes. Sci. Rep. 6, 19688. http://www.nature.com/articles/srep19688 Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect...
    Downloads: 0 This Week
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  • 8
    NiftyRec
    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
    Downloads: 8 This Week
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  • 9

    detectIR

    Detection of Perfect and Imperfect Inverted Repeats

    detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please...
    Downloads: 0 This Week
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  • 10
    MIST

    MIST

    A MATLAB toolbox to simulate optical systems

    ... interferometers with resonant cavities used for the detection of gravitational waves. Subscribe to the mailing list for updates and news. If you use MIST in your own simulation work, please cite is as G. Vajente, "Fast modal simulation of paraxial optical systems: the MIST open source toolbox" Classical and Quantum Gravity 30, 075014 (2013)
    Downloads: 0 This Week
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  • 11
    SBEToolbox

    SBEToolbox

    Systems Biology and Evolution Toolbox (SBEToolbox).

    ... MIGRATED TO GITHUB FOR FUTURE UPDATES: https://github.com/biocoder/SBEToolbox/releases ******************************************************************************************************************************** Reference ( In Press ): ================= Konganti K, Wang G, Yang E, Cai JJ* (2013). SBEToolbox: a Matlab toolbox for biological network analysis. Evolutionary Bioinformatics, 8:1-15
    Downloads: 0 This Week
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  • 12

    GPUmat

    GPUmat is a C/C++ GPU engine for Matlab based on NVIDIA CUDA.

    Please download Windows and Linux version by clicking on "Browse All Files". GPUmat allows standard MATLAB code to run on GPUs. The engine is written in C/C++ and based on NVIDIA CUDA. Please contact gpyougroup@gmail.com for any questions. Unfortunately GPUmat was compiled for CUDA 5.0 and we basically stopped any support for other CUDA version because we don't have the resources to do it. But you can compile the source code if you want. Instructions to compile the source code:...
    Downloads: 2 This Week
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  • 13
    TrajLab

    TrajLab

    MATLAB based programs for trajectory simulations of molecules

    ... for a general purpose molecular simulation package in MATLAB. While the authors are aware that many other highly specialized and highly optimized program packages for the same purpose exist (e. g. AMBER, GROMACS, NAMD, etc.), the MATLAB environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in teaching!
    Downloads: 0 This Week
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  • 14
    Simulate the optical reflectance from an infinite turbid medium under an ideal oblique incidence optical source. Two versions are implemented: CPU and GPU. They both generate statistically the same results but GPU version works much faster.
    Downloads: 0 This Week
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  • 15
    Particular filter CUDA

    Particular filter CUDA

    Improvements of positioning algorithms using CUDA

    Our project consist in porting positioning algorithms on a GPU. We will improve programs which are already working on CPU in order to make them compatible with the CUDA technology offered by Nvidia. The advantage of this technology is that it allows us to use massive multithreading and so make calculations go faster. Algorithms will be implemented in C++.
    Downloads: 0 This Week
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