Showing 72 open source projects for "https"

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  • 1

    The DREAM Toolbox

    The DREAM toolbox is a free open source acoustic field simulation tool

    ...The code in the svn repository # svn co http://svn.code.sf.net/p/dreamtoolbox/code/trunk dream is not used actively anymore and is kept here for referecne only. The development code has moved to git on: https://github.com/frli8848/DREAM
    Downloads: 0 This Week
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  • 2

    TX-TL modeling toolbox

    Modeling and analysis tools for the TX-TL cell-free expression system

    ...These tools include component models for simulating and analyzing biomolecular circuits, as well tools for composing circuits and creating more complex systems. NOTE: This project has been shifted to GitHub: https://github.com/BuildACell/txtlsim
    Downloads: 0 This Week
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  • 3
    ...Perform a phase retrieval algorithm based on maximum likelihood estimation (MLE) of a phase aberration term which is added to the theoretical pupil function of the imaging system. 3. Use the phase-retrieved pupil function to perform single-emitter localization. Accompanying publication available here: https://doi.org/10.1364/OE.25.007945
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  • 4

    detectMITE

    Detection of Miniature Inverted Repeat Transposable Elements

    ...id=10.1371/journal.pone.0113349 [3] detectMITE user manual Please visit the Wiki page of this website. [4] detectMITE Q&A For Q&A, please visit the Blog page of this website. [5] Update history To see the update history, go to https://sourceforge.net/p/detectmite/wiki/UpdateHistory/
    Downloads: 6 This Week
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  • 5
    All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit https://sourceforge.net/projects/scixminer/ to download the newest version. The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
    Downloads: 0 This Week
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  • 6
    MRiLab

    MRiLab

    A Numerical MRI Simulation Platform

    The MRiLab project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MRiLab/ The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. ...
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    Downloads: 13 This Week
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  • 7
    Orbit Wizard

    Orbit Wizard

    Educational open source tool for the design of geocentric orbits

    ...The developers of Orbit Wizard are Álvaro Romero Calvo and Fernando Soler Lanagrán. Orbit Wizard is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License v2.0 External references: M_Map: https://www.eoas.ubc.ca/~rich/map.html Wikimedia: https://upload.wikimedia.org/wikipedia/commons/thumb/c/cd/Land_ocean_ice_2048.jpg/1024px-Land_ocean_ice_2048.jpg
    Downloads: 5 This Week
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  • 8

    PB-sQF_BacterialTyping

    Bacterial Typing from either assembled or raw short reads file

    ...The input file is the k-mer counts of the unknown assembled genome sequence or raw short reads file in decimal format generated by KAnalyze developed by P. Audano et al. (https://sourceforge.net/projects/kanalyze/). The download included the library index, the library name and sample unknowns.
    Downloads: 2 This Week
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  • 9
    Mass-based dissimilarity

    Mass-based dissimilarity

    A data dependent dissimilarity measure based on mass estimation.

    ...KDD 2016 http://dx.doi.org/10.1145/2939672.2939779 The source code, presentation slide and poster are attached under "Files". The presentation video in KDD 2016 is published on https://youtu.be/eotD_-SuEoo . Since this software is licensed under the Gnu General Public license GPLv3, any derivative work must be licensed under the GPL as well. This software is free only for non-commercial use. For commercial projects, it is possible to obtain a commercial license through the Commercial Services of Federation University Australia. ...
    Downloads: 0 This Week
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  • 10
    WavePacket

    WavePacket

    Dynamics of quantum systems, controlled by external fields

    WavePacket is a program package for numerical quantum-mechanics of distinguishable particles. It can be used to solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, as well as classical or quantum-classical Liouville equations. Optionally accounting for the interaction with external electric fields within the semiclassical dipole approximation, WavePacket can be used to simulate modern experiments involving ultrashort light...
    Downloads: 0 This Week
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  • 11
    SPIW - Scanning Probe Image Wizard

    SPIW - Scanning Probe Image Wizard

    Scanning Probe Image Wizard - MATLAB Toolbox

    ...For information on SPIW's performance see our publication ( http://dx.doi.org/10.1063/1.4827076 ) in the Review of Scientific Instruments. A related open-source project SPIEPy (https://pypi.python.org/pypi/SPIEPy/) is developing a python library to for automated SPM imaged enhancement. SPIEPy brings many SPIW algorithms to the Python user.
    Downloads: 0 This Week
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  • 12
    MATAA (Mat's Audio Analyzer) is a flexible and versatile audio analysis system based on Matlab or GNU Octave. MATAA was removed from SourceForge. Please visit https://github.com/mbrennwa/mataa for further information.
    Downloads: 0 This Week
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  • 13

    FGAP

    an automated gap closing tool

    Development version: https://github.com/pirovc/fgap FGAP aims to improve genome sequences by merging alternative assemblies or incorporating alternative data, analyzing the gap region and indicating the best sequence to close the gap.
    Downloads: 0 This Week
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  • 14

    GeoPDEs

    A package for Isogeometric Analysis in Octave and Matlab

    ...GeoPDEs is no longer developed at SF, and has moved to GitHub. Please visit http://rafavzqz.github.io/geopdes/ The mailing list will remain active. Releases up to 2.0.4 can be found here. From version 2.1.0 onward, see https://github.com/rafavzqz/geopdes
    Downloads: 0 This Week
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  • 15
    FermiFab
    Repository moving to https://github.com/cmendl/fermifab ! A quantum physics toolbox for small fermionic systems. Keywords: quantum mechanics, reduced density matrices, Slater determinants, second quantization, creation and annihilation operators
    Downloads: 0 This Week
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  • 16

    EyeBallGUI

    a tool for interactively viewing & marking multi-channel biosignals

    ...EyeBallGUI is based in MATLAB® and works in Microsoft Windows. Proficiency in MATLAB is not required to use EyeBallGUI. It can be used either as a stand-alone MATLAB-based tool or as an EEGLAB plugin. Please cite using: https://doi.org/10.1101/129437
    Downloads: 0 This Week
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  • 17
    AEO-Light 1.1

    AEO-Light 1.1

    Version 1.1 is no longer supported.

    Version 1.1 is no longer supported. Please see the new version at https://usc-imi.github.io/aeo-light/ Description for 1.1 continues below: AEO-Light 1.1 is an open-source software application that takes a digital scan of motion picture film with optical sound tracks and directly reproduces the audio, producing as a result a synchronized sound film file. Funded by a grant from the National Endowment for the Humanities and by the University of South Carolina.
    Downloads: 0 This Week
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  • 18
    ControllerTester

    ControllerTester

    An automated controller testing tool

    Copyright 2014 Alvin Stanescu, Software Engineering Chair @ Technische Universitaet Munchen Licensed under the Apache License, Version 2.0. Please refer to https://github.com/AlvinStanescu/ControllerTester/blob/master/README.md for further details.
    Downloads: 1 This Week
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  • 19

    SCRalyze

    A matlab environment for model-based psychophysiology

    ...A flexible import interface and many utilities make this software a standalone tool. IMPORTANT: As of 04.11.2019, the official code repository for PsPM (formerly SCRalyze) has been moved to https://github.com/bachlab/PsPM . In order to check the latest releases, discussion and bug reports, please refer to our new repository. Although this website will maintained to provide further releases, there will be no active development on the SVN repository. Thank you for your understanding and for using PsPM.
    Downloads: 0 This Week
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  • 20

    detectIR

    Detection of Perfect and Imperfect Inverted Repeats

    ... [5] detectIR bug report You can report a bug as a Ticket request, or start a topic session in the Discussion webpage of this website. [6] Update history To see the update history, go to https://sourceforge.net/p/detectir/wiki/Update%20History/
    Downloads: 0 This Week
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  • 21
    Ymap - Yeast Mapping Analysis Pipeline

    Ymap - Yeast Mapping Analysis Pipeline

    Pipeline for large-scale genome changes analysis of genome datasets.

    The active use repository has migrated over to: https://github.com/darrenabbey/ymap The repository here was errantly created with some large binary files included. Attempts to extract the files from the history here have failed. A copy of the history was successfully scrubbed and then hosted at github. -------- Eukaryotic pathogens have complicated and dynamic genomes. To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of heterozygosity (LOH) events in Candida albicans, the most common human fungal pathogen, we developed a pipeline for analyzing diverse genome-scale datasets from microarray, deep sequencing, and restriction site associated DNA sequence experiments for clinical and laboratory strains. ...
    Downloads: 0 This Week
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  • 22
    C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
    Downloads: 0 This Week
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  • 23
    OpenFlux2 is an extended version of OpenFLUX (https://sourceforge.net/projects/openflux/) - the modern MATLAB-based modelling software for 13C flux analysis (MFA). The following features were implemented in OpenFLUX2, which were not present in original software: integrated support for calculation and analysis of parallel labeling experiments (PLE), extended statistical analysis of parameter estimation results, calculation of fluxes and measurements correlation, structural identifiability analysis and elements of experimental design.
    Downloads: 1 This Week
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  • 24

    RFlex

    Spectroradiometer control for shipborne reflectance measurements

    ...Continue to the download section for the latest release information Rrs data processing code (the 'fingerprint technique') is also available - but moved to my github page: https://github.com/StefanSimis -------- Oct 2014: a beta version is available (20141006) Sep 2014 news: The latest version is 20140723, addressing some bugs. See the change log. Enjoy! Two Rflex units collected over 30,000 validated Rrs spectra on the Baltic Sea this year! See http://www.ferryscope.org for dissemination of these results in the coming years. ------ Licence: http://creativecommons.org/licenses/by-nc-sa/3.0/
    Downloads: 0 This Week
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  • 25
    MatrixUser

    MatrixUser

    A Multi-functional GUI-based Program for Image Processing and Analysis

    The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation.
    Downloads: 5 This Week
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