Showing 52 open source projects for "path finding c"

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  • 1
    FragGeneScan
    FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
    Downloads: 9 This Week
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  • 2
    GeoTools, the Java GIS toolkit

    GeoTools, the Java GIS toolkit

    Toolkit for working with and mapping geospatial data

    GeoTools is an open source (LGPL) Java code library which provides standards compliant methods for the manipulation of geospatial data. GeoTools is an Open Source Geospatial Foundation project. The GeoTools library data structures are based on Open Geospatial Consortium (OGC) specifications.
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    Downloads: 147 This Week
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  • 3
    UniversalMer

    UniversalMer

    A CLI k-mer counting tool for multiple sizes of k at once.

    UniversalMer is a k-mer counting tool for multiple size of k at once. It is available for DNA, RNA, and protein sequences. The program counts and summarizes the exact frequency of all k-mers from 1-mer to a user-defined maximum length (kmax). Analyzing the k-mer spectrum across multiple values of k can be done in seconds. This program is designed for bioinformatics researchers and scientists.
    Downloads: 0 This Week
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  • 4

    DEEP

    Differential Evolution Entirely Parallel Method

    The Differential Evolution, introduced in 1995 by Storn and Price, considers the population, that is divided into branches, one per computational node. The Differential Evolution Entirely Parallel method takes into account the individual age, that is defined as the number of iterations the individual survived without changes. The introduced improvements are: (I) allow several oldest individuals to be overwritten by the same number of best ones in the population, (II) new selection rule uses...
    Downloads: 2 This Week
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  • 5
    CAMPARI

    CAMPARI

    Software for molecular simulations and trajectory analysis

    We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and...
    Downloads: 9 This Week
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  • 6
    Parallel and Distributed Process System

    Parallel and Distributed Process System

    OmniSim simulates parallel and distributed processing systems

    Parallel and Distributed Process OmniSim Computational Neuroscience: Large-scale neural population dynamics, brain-inspired computing architectures, and neuro-symbolic AI systems 🧬 Scientific Overview PDP-OmniSim is an advanced computational framework for simulating parallel and distributed processing systems, with cutting-edge applications in computational neuroscience, distributed computing, and complex systems modeling. The framework provides researchers with robust tools for...
    Downloads: 0 This Week
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  • 7

    ccgsl

    Use Gnu Scientific Library as if it were writtem in C++.

    The ccgsl provides simple C++ wrappers for the GNU Scientific Library. It uses Java-like shared-pointer classes in place of structs to avoid direct memory allocation/freeing and to work better with the STL. It lets you construct functions for optimisation, root-finding and the like from C++ member functions, making it easier to integrate with existing C++ code.
    Downloads: 1 This Week
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  • 8
    Wuweido 3D CAD

    Wuweido 3D CAD

    Free 3D Mobile CAD

    Wuweido is a professional 3D CAD on your phone or tablet. More than just a viewer, dozens of modeling tools are provided to create and modify 3D models in the most natural way. Wuweido allows you to import and export models in standard CAD format. Unlike Onshape™ on Cloud, Wuweido is running locally on your device and it's more like Rhino™ 3D on mobile. Wuweido is powered by OPEN CASCADE. OPEN CASCADE is an incredible powerful geometry kernel innovating quickly. Wuweido is inspired by...
    Downloads: 5 This Week
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  • 9
    AdaAutoDiff

    AdaAutoDiff

    C++ Templates and Ada Package for Automatic Differentiation

    Operators are overloaded so that a normal looking function definition provides access to not only evaluations of itself, but to evaluations of any of its analytic derivatives. Automatic differentiation means the user does not need to define the analytic expressions for all the various partial derivatives. It also means that those complex expressions are essentially calculated at compile time, and merely evaluated at runtime. First order derivatives only, forward...
    Downloads: 0 This Week
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  • 10
    SystemC Network Simulation Library (SCNSL) is an extension of SystemC to allow modelling packet-based networks such as wireless networks, ethernet, fieldbus, etc. As done by basic SystemC for signals on the bus, SCNSL provides primitives to model packet trasmission, reception, contention on the channel and wireless path loss. The use of SCNSL allows the easy and complete modelling of distributed applications of networked embedded systems such as wireless sensor networks, routers, and...
    Downloads: 0 This Week
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  • 11
    Sciatrope

    Sciatrope

    An application for eclipse chasers, by an eclipse chaser.

    Sciatrope is a Cocoa (macOS) application made by an eclipse chaser for eclipse chasers. It helps preparing for, and observe, any solar eclipse. It gives the eclipse circumstances, distance and direction to the central line. Observing location can be provided by the Mac, an external GPS, by location name, from a previously saved favorite location, or by latitude and longitude. Eclipse circumstances are displayed in tabular form, on a map, a compass, or in an image, with azimuthal or...
    Downloads: 0 This Week
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  • 12
    DetectorCalibration

    DetectorCalibration

    Peak and global efficiency of radiation source-detector equipment

    This software uses Geant4 simulation toolkit for computing detector efficiency in terms of peak efficiency and gross efficiency. It is designed mainly for gamma detectors (NaI or HpGe) but can be extended for beta or any other radiation type. Radiation source can be frontal beam, point source, Sarpagan baker (cylinder) and Marinelli baker. Due to the nature of Monte Carlo simulation technique, all geometries involved must be well known for accurate results! Can be used along with...
    Downloads: 0 This Week
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  • 13

    OpenGrowth

    OpenGrowth is a program which constructs de novo ligands for proteins.

    OpenGrowth is a research program which grows new ligands in proteins by connecting small organic fragments. The details can be found in the original publication "OpenGrowth: an automated and rational algorithm for finding new protein ligands" (J. Med. Chem., http://dx.doi.org/10.1021/acs.jmedchem.5b00886). To use OpenGrowth, you will need OpenGrowth_1.0.zip and Resources_1.0.2.zip that can be found by clicking on the Files menu in the horizontal bar at the top...
    Downloads: 0 This Week
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  • 14
    SiBELia

    SiBELia

    Synteny Block ExpLoration tool

    Sibelia: A comparative genomic tool: It assists biologists in analysing the genomic variations that correlate with pathogens, or the genomic changes that help microorganisms adapt in different environments. Sibelia will also be helpful for the evolutionary and genome rearrangement studies for multiple strains of microorganisms.
    Downloads: 0 This Week
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  • 15
    Robotics Library

    Robotics Library

    C++ framework for robot kinematics, dynamics, motion planning, control

    The Robotics Library (RL) is a self-contained C++ library for rigid body kinematics and dynamics, motion planning, and control. It covers spatial vector algebra, multibody systems, hardware abstraction, path planning, collision detection, and visualization.
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    Downloads: 17 This Week
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  • 16

    PRay

    GUI for rayinvr modelling

    PRay stands for 'Plot Rayinvr' and is a graphical user interface for the ray-tracing software rayinvr (Zelt & Smith, 1992). In principle it can also be used as viewer for seismic traveltime data from other software like tomo2D. Zelt, C. A. and Smith, R. B., 1992, Seismic traveltime inversion for 2-D crustal velocity structure, Geophysical Journal International, 108(1), 16--34, 10.1111/j.1365-246X.1992.tb00836.x SYSTEM/USER REQUIREMENTS: - Linux/Mac OS X - You do need to be familiar with command line operations. - a running rayinvr installation DOWNLOAD AND INSTALLATION: Please use the svn repository to download the code: svn checkout svn://svn.code.sf.net/p/pray-plot-rayinvr/code/trunk/ path/to/your/installation To install follow the instructions in the downloaded file 'install.readme'
    Downloads: 0 This Week
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  • 17
    CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
    Downloads: 2 This Week
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  • 18
    Welsh Natural Language Toolkit
    The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. The project also includes CYMRIE an adapted version for Welsh of the GATE - ANNIE Named Entity Recognition (NER) application for a range of entities such as Persons, Organisations, Locations, and date and time expressions. ...
    Downloads: 0 This Week
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  • 19
    MathFu

    MathFu

    C++ math library developed primarily for games focused on simplicity

    MathFu is a small, header-only C++ math library optimized for games and real-time graphics on mobile and desktop. It provides fixed-size vector, matrix, and quaternion types with APIs that mirror the operations you actually use in inner loops—dot, cross, normalize, transforms, and projections. Implementations are carefully tuned to leverage SIMD instruction sets such as SSE and NEON while preserving a clean fallback path for portability.
    Downloads: 0 This Week
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  • 20
    Satsuma .NET Graph Library

    Satsuma .NET Graph Library

    a delicious .NET graph library

    Satsuma is a graph library for .NET, written in C#. Satsuma is an easy-to-use and flexible library, which implements all the necessary graph structures, and the fastest possible graph algorithms. DOCUMENTATION: http://satsumagraph.sourceforge.net/ Satsuma is not a charting library. 'Graph' is used in the mathematical sense here (e.g. nodes connected with arcs). Satsuma is released under the zlib license. This license is very permissive and allows you to use Satsuma for both personal...
    Downloads: 0 This Week
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  • 21
    NxN Matrix Inverse Dhaval Kadia

    NxN Matrix Inverse Dhaval Kadia

    Howdy ! Here is Solution of Finding INVERSE of NxN Matrix !

    This One will be better option to solve LARGE Matrix Operation Including ADJOINT , DETERMINANT , INVERSE of NxN Matrix .
    Downloads: 0 This Week
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  • 22
    Spglib is a C-library written for finding crystal symmetry. Symmetry operation, space group, etc, can be obtained using this symmetry finder. It is easy to include this library to your code. For more information, See, http://spglib.sourceforge.net/
    Downloads: 10 This Week
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  • 23
    Welsh Natural Language Toolkit

    Welsh Natural Language Toolkit

    WNLT is a suite of open source natural language modules for the Welsh

    The project supports the Welsh Language Technology domain with a set of NLP tools that drive innovation and advance the development of sophisticated textual analysis solutions. The WNLT project delivers four core NLP modules; a) Word Segmentation for separating text into words b) Sentence Boundary Disambiguation for finding sentence boundaries c) Part of Speech Tagger for determining the part of speech of each word d) Morphological Analyser for identifying the root form (lemma) of words. The modules are written in JAVA and ‘wrapped’ for execution under the General Architecture for Text Engineering (GATE) framework. The project also includes CYMRIE an adapted version for Welsh of the GATE - ANNIE Named Entity Recognition (NER) application for a range of entities such as Persons, Organisations, Locations, and date and time expressions.
    Downloads: 0 This Week
    Last Update:
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  • 24

    physicsmata

    API for all possible cellular automata that work same at all angles

    Its strange how the "sorted pointers" normalizing makes just about any random function, as long as it connects the inputs to the outputs on some path, vibrate as some nonlinear shape of wave. This could be used as a game interface for evolvable musical instruments or fluid puzzle games. Physicsmata is similar in effect to SmoothLife but simpler and pure Java. The cellular automata API takes a function to run at each point. Its parameters are sums of screen brightness (n color dimensions are...
    Downloads: 0 This Week
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  • 25

    TransGeneScan

    TransGeneScan is a gene finding tool for metatranscriptomic sequences

    NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan). TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github. TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.
    Downloads: 0 This Week
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