Search Results for "human"
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Showing 107 open source projects for "human"
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ElectronBot
ElectronBot is a mini desktop robot
...The creator provides full source materials—mechanical (3D printed or CNC parts), electronics (PCBs, custom boards), firmware and drivers—so someone can build or modify the robot themselves. The platform also integrates computer vision or gesture sensing (for example, keypoint detection of human pose) so the bot can respond dynamically to a person’s presence or movement. -
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kallisto
Near-optimal RNA-Seq quantification
...It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. And since it uses pseudoalignment, it is robust to errors in the reads and preserves the key information needed for quantification. This makes kallisto not only fast but highly accurate as well. ... -
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Bowtie 2
A fast and sensitive gapped read aligner
...It is especially effective for reads ranging from around 50 bases to hundreds or thousands of characters, and it supports modern sequencing workflows that require gapped, local, and paired-end alignment. The tool builds compact FM-index-based reference indexes, keeping memory usage low even for large genomes like the human genome. Bowtie 2 outputs alignments in SAM format and includes companion utilities for building and inspecting indexes. It is widely used in bioinformatics pipelines for RNA-seq, DNA-seq, metagenomics, variant analysis, and other sequencing-based research tasks. Overall, Bowtie 2 remains a foundational command-line tool for high-throughput sequence alignment and reproducible computational biology workflows. -
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Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
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The Mars Simulation Project is an open source Java project to create a simulation of future human settlement on the planet Mars. See https://github.com/mars-sim/mars-sim for the LATEST issues/wiki/code change
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OpenQASM
Quantum assembly language for extended quantum circuits
...OpenQASM presents a parameterized set of physical logic gates and concurrent real-time classical computations. Its main goal is to serve as an intermediate representation for higher-level compilers to communicate with quantum hardware. Allowances have been made for human usability. In particular, the language admits different representations of the same program as it is transformed from a high-level description to a pulse representation. -
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XMDS
Fast integrator of stochastic partial differential equations
XMDS is a code generator that integrates equations. You write them down in human readable form in a XML file, and it goes away and writes and compiles a C++ program that integrates those equations as fast as it can possibly be done in your architecture. -
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...FIND US AT https://github.com/GateNLP/ GATE (General Architecture for Text Engineering) is an architecture, framework and development environment for developing, evaluating and embedding Human Language Technology. See http://gate.ac.uk for full details.
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The auditory modeling toolbox (AMT) is a Matlab/Octave toolbox for the development and application of auditory computational models. Over 50 auditory models implemented in Matlab, Octave, C, C++, and Python can be run from Matlab and Octave, on Windows and Linux. The AMT provides a well-structured in-code documentation, includes auditory data required to run the models. It integrates functionality to reproduce the model predictions. Model implementations can be evaluated in two stages,...
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Eagle Mode
Zoomable user interface (ZUI) with file manager, file viewers and more
Eagle Mode is a zoomable user interface (ZUI) with file manager, file viewers, games, and more. This project is about a futuristic style of human-computer interaction, where the user can visit almost everything simply by zooming in. It features a portable C++ toolkit API for developing such ZUIs, and it features the Eagle Mode application, which provides a virtual cosmos with plugin applications. The most important one is the professional file manager with its rich, scriptable command set. ... -
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DEVS-Suite Simulator
Component, CA, and CCA models; superdense time, DB repo, testing, etc.
Integrated component-based and cellular automata (CA) Parallel DEVS simulator: https://acims.asu.edu/devs-suite/ OFFERS: 1) synchronized execution & animation, 2) run-time linear/superdense I/O & state trajectories, 3) Action Level Real-Time modeling & simulation, 4) model checking, 5) ABM, 6) CA & composable CA playback, 7) KIB interaction modeling, 8) hierarchical model libraries, 9) Black-Box testing & debugging, 10) PostgreSQL repository, 11) FMU (OpenModelica), 12) OSATE (AADL)... -
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SimThyr
A simulation program for thyroid homeostasis.
SimThyr is a continuous simulation program for the human pituitary-thyroid feedback control system. Applications of this program cover research, including development of hypotheses, and education of students in biology and medicine, nurses and patients. -
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miRDeep*
MiRDeep*
Please cite: An, J., Lai, J., Lehman, M.L. and Nelson, C.C. (2013) miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data. Nucleic Acids Res, 41, 727-737. We will create index for you if you tell us your interested species (j.an@qut.edu.au). download command line version "MDS_command_line_Vxx.zip" clicking "Browse All Files" please find miRPlant in sourceforge for plant miRNA prediction. -
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Perceptron
The birth of modern video feedback art.
...Perceptron * recursively transforms images and video streams in realtime and produces a combination of Julia fractals, IFS fractals, and chaotic patterns due to video feedback * evolves geometric patterns into the realm of infinite details and deepens the thought * records animations (movies) * saves and opens presets (state files) * loads user photographs or captures screen and webcam input * has user interface based on multiple mouse cursors, and almost the entire keyboard * has multiple windows and fullscreen mode * takes complex geometric transforms as input * applies numerous coloring techniques * smoothly transforms fractals and creates endless psychedelic journeys * resonates with the human perception Visit the Perceptron home page at http://perceptron.sourceforge.net -
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MITRE Annotation Toolkit
A toolkit for managing and manipulating text annotations
The MITRE Annotation Toolkit (MAT) is a suite of tools which can be used for automated and human tagging of annotations. Annotation is a process, used mostly by researchers in natural language processing, of enhancing documents with information about the various phrase types the documents contain. MAT supports both UI interaction and command-line interaction, and provides various levels of control over the overall annotation process. -
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Cell Paint
cellPAINT allows users to create living illustrations of biology.
...There are currently several prototypes available: --cellPAINT_coronavirus includes a newly-redesigned user interface, and molecular building blocks for coronavirus, blood plasma, and a simple human cell --cellPAINT_exo includes hand-painted sprites created by Julia Jimenez during an internship, and also allows input of custom sprites through Mesoscope --cellPAINT_VR is a 3D virtual reality version of cellPAINT, with molecular building blocks for a red blood cell cytoskeleton --cellPAINT_2D is the initial alpha release of cellPAINT, with building blocks for HIV, blood plasma, and a human T-cell. ... -
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JDecisiontable
Stop to rack your brain, start using process-oriented decision tables!
This tool is about a method called "process-oriented decision tables". These are decision tables but different from "normal" decision tables. They fix the flaws of traditional decision tables making it a joy to work with. But they keep all benefits of traditional decision tables. First of all they present the logic in a very dense form. 1. Explore all possible combinations of conditions and actions by question-and-answer. 2. Have a compact one-sheet-view on complex logic. ... -
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Linux Debian 11 Bullseye Rtos
Did you ever made a production machine on steroids?
...This Distro is build up from the bootstrap. Have Fun and don't forget to hit the bell. Mr. Macron (president) from France is blackmailing his citizens and violating human rights. Therefore France is no longer supported and will have a ip block in the upcoming releases. -
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Linux Debian 10 Buster Rtos
Debian 10 Buster Rtos. 4.19-rt kernel. Perfect for daily usage.
...If you have any compatibility issue's with hardware, this is the OS to try out. Have fun ! Mr. Macron (president) from France is blackmailing his citizens and violating human rights. Therefore France is no longer supported and will have a ip block in the upcoming releases. -
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MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
MToolBox is a highly automated bioinformatics pipeline to reconstruct and analyze human mitochondrial DNA from high throughput sequencing data. MToolBox includes an updated computational strategy to assemble mitochondrial genomes from Whole Exome and/or Genome Sequencing (PMID: 22669646) and an improved fragment-classify tool (PMID:22139932) for haplogroup assignment, functional and prioritization analysis of mitochondrial variants. -
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Antimony
Antimony is a human-readable, human-writable model definition language
Antimony is a human-readable, human-writable model definition language. libAntimony is a library that will read and write Antimony and SBML files and provides an API for other programs to import Antimony models into their own internal formats. -
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Quadric
Application for simple base-2 binary to base-4 DNA-code conversion
Quadric is an opensource file converter created by the Jomcraft Network development team. In it's core functionality this small utility can transform base-2 binary files into base-4 DNA-coded human-legible ASCII-files. -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)... -
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LymPHOS2
LymPHOS2 Web-App
LymPHOS2 is a web-based Application at www.LymPHOS.org containing peptidic and protein sequences and spectrometric information on the PhosphoProteome of human T-Lymphocytes. - Nguyen, TD., Vidal-Cortes, O., Gallardo, Ó., Abian, J., Carrascal, M., LymPHOS 2.0: an update of a phosphosite database of primary human T cells. Database 2015, 2015. DOI: 10.1093/database/bav115 - Carrascal, M., Ovelleiro, D., Casas, V., Gay, M., Abian, J., Phosphorylation analysis of primary human T lymphocytes using sequential IMAC and titanium oxide enrichment. ... -
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MORPHEUS for Fiji
A tool for unbiased and reproducible cell morphometry in Fiji/ImageJ2
...Optionally, also the extraction of nucleus features and a double-scale analysis of orientation can be performed. The whole algorithm is implemented as a one-click procedure, thus minimizing the user intervention and the ensuing biases and errors of human origin. By this way, MORPHEUS is intended to be a useful tool to face the issue of reproducibility in bioimage analysis.