Search Results for "format conversion"
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Showing 25 open source projects for "format conversion"
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QGIS
Cross platform (lin/win/mac) geographical information system (GIS)
...We also collect case studies of how people all over the world use QGIS for their GIS work. You can view combinations of vector and raster data (in 2D or 3D) in different formats and projections without conversion to an internal or common format. -
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L7
Large-scale WebGL-powered geospatial data visualization analysis
L7 is a WebGL-based open source large-scale geospatial data visual analysis development framework launched by Ant Financial's AntV data visualization team. The L in L7 stands for Location, and the 7 stands for the seven continents of the world, implying the ability to provide visual analysis for global location data. L7 focuses on the visual expression of data, and realizes clear and effective expression from data to information through the setting of visual variables such as color, size,... -
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NGSEP
NGSEP (Next Generation Sequencing Experience Platform)
...The current version provides functionalities for both de-novo and reference guided analysis of sequencing data, including genome assembly, read mapping, variants detection and genotyping and de-novo analysis of data generated from reduced representation protocols. NGSEP also provides modules for analysis of genomic variation databases (VCF files), including functional annotation, filtering, format conversion, comparison, clustering, imputation, introgression analysis and different kinds of statistics. Since version 4, we provide functionalities for management of genomes and transcriptomes, including genome alignment and annotation of transposable elements. A complete list of functionalities is available in our wiki (https://sourceforge.net/p/ngsep/wiki/Home/). ... -
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timetools (for r-cran)
Seasonal/Sequential (Instants/Durations, Even or not) Time Series
Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : POSIXcti, POSIXctp, TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame ; methods to switch from a class to another and to modify the time support of series (hourly time... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other... -
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crossmap
convert genome coordinates betweeen assemblies
CrossMap is a program for convenient conversion of genome coordinates and genomeannotation files between assemblies (eg. lift from GRCh36/hg18 to GRCh37/hg19 or vice versa).It support file in BAM, SAM, BED, Wiggle, BigWig, GFF, GTF format. -
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BrukerEyes
BrukerEyes is an open-source package for Bruker datasets management
BrukerEyes is a cross-platform open-source package for Bruker datasets management. It helps scientists to explore their datasets easily. This project was supported by: European Union's Horizon 2020 research and innovation program under the Marie Sklodowska-Curie grant agreement No 813120 (INSPiRE-MED) © Institute of Scientific Instruments of the Czech Academy of Sciences. -
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ms
Tiny millisecond conversion utility
Use this package to easily convert various time formats to milliseconds. Works both in Node.js and in the browser. If a number is supplied to ms, a string with a unit is returned. If a string that contains the number is supplied, it returns it as a number (e.g.: it returns 100 for '100'). If you pass a string with a number and a valid unit, the number of equivalent milliseconds is returned. For added safety, we're using Template Literal Types (added in TypeScript 4.1). This ensures that you... -
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Excel Google Earth KML Creator
Convert site coordinates, sectors and MW links in Excel to KML format
This handy Excel VBA macro was designed for the telecom market, where you are able to convert points to KML, as well as sectors (as used in mobile network base stations) and links (as used for microwave links). Technical info presented in the resulting KML output file is not to be used for engineering / planning purposes. This was not the intention of this VBA tool. The only intention was to create a conversion tool with additional information presented in the KML file for display only... -
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ConvertMAS
ConvertMAS converts Chemical File Formats mol, mol2 and sdf.
...It works on mol, mol2 and sdf files. It converts single file to respective formats. It will split sdf file with multiple molecules into seperate single files of any desired format. Also ConvertMAS creates sdf files from joining of mol, mol2 and sdf files. This is stand alone application; hence no need of internet connectivity to get results. It will generate output files in less time. Various online tools are available for conversion of Chemical file formats; but ConvertMAS mainly works on mol, mol2 and sdf effectively. -
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Java class libraries for structural biology development: includes protein format conversion tool, printf-based text formatting, Pred2ary secondary structure prediction, neural net library, Hooke-Jeeves global optimizer, and misc. math & statistics.
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DAWGPAWS is a suite of command line programs written in Perl that accelerates annotation of genes and transposable elements in plant genomes by automating the process of running annotation programs and facilitating combined evidence annotation curation.
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nwbas2ecce
nwbas2ecce converts nwchem basis set files to the ECCE format
The basis sets included with ECCE have -- as far as I can tell -- not been updated for many years. In addition, many of the newer basis sets that come with nwchem aren't included, such as the def2- series. nwbas2ecce is a python script that aims to automate as much as possible of the conversion process of a nwchem basis set file into the files necessary for ECCE to included it in the basis set tool. The process isn't completely automatic, but I also believe that it shouldn't be to... -
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This project provides a set of libraries written in Java to easily manipulate Multi-Criteria Decision Aid (MCDA) concepts, especially related to outranking methods, and XMCDA files.
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Utility to convert PED genome file into RAW SNP format. Creates multiple files per person. Supports big files. The same conversion utility has been included into "aisconvert" toolkit, so this project is rather deprecated.
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rSIGNAL - ruby Simple Inter-Interface Generic Aggregation Layer. It allows external data sources to be aggregated, store the aggregated data and print the aggregated data out in a transformed format to a file (or integrated HTTP server) on demand.
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A software to store, (PUT) meteorological data from complex free form text format to databases and and GET stored (and already loaded) data from databases using OPeNDAP protocol. Written using Java6, XSD, and C++. It support OPeNDAP clients thanks to
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Java Data Processing Project aims to manipulate text file containing scientific data such as time/intensity scan or spectrum. Jdpp provide large flexibility to read all possible time duration and date format. It is originally design to treat MS data.
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The goal of the OSM2PostGIS project is to develop an OpenStreetMap data processor that can import any amount of .osm XML data into a PostGIS database, and produce evaluated navigation network topologies to support routing.
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Geographic tag manipulator - a simple XSLT-based tool to add, remove, or change tags of OpenStreetMap objects.
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* Java classes for parsing text, conversion to XML or to evaluate in Java. The parser is textual-script-controlled with a syntax near Backus Naur Format, named ZBNF. * Some routines for conversion: C-Header or Java to XMI, XML-Documentation generation,
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monoGIS will be a complete GIS suite for the Mono platform. The current milestone release includes an internet mapserver, OGC WMS implementation and some tools like spatial format conversion. For other projects using monoGIS see mdwglib and Appomattox.
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ReadSeq is a program and library for conversion of biosequence data from one format to another, useful in various bioinformatics programs and services. It is written in Java, though an earlier version in C remains available.
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