Search Results for "2010"
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Showing 34 open source projects for "2010"
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...It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
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Watershed Districts
Creates voting districts using watershed boundaries.
Uses the USGS Watershed Boundary Dataset and the 2010 US Census data to create representational voting districts with equivalent population. -
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gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)... -
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RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/ raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood. A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI:...
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...It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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Palette Designer
A color-code design tool
...It can be used by itself or in conjunction with software that uses aesthetic considerations such as color harmony to create color sets. Palette Designer consists of an Excel spreadsheet, supplemented with Visual Basic macros. It has been tested under Office 2010 and 2016 for Windows and Office 2011 and 2016 for Mac. It is not compatible with LibreOffice or Apache OpenOffice. -
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Nutrition Tables
Nutrition Investigator
This Nutrition Software consists of easy modifiable tables of selected food nutrients in one file, helps to make an individual diet. The information in this file was obtained from: Source (or Adapted from, as appropriate): Canadian Nutrient File, Health Canada, 2010 and other sources. This file gives an idea of which nutrient could be more likely found in fair quantities in some product. Use that file as a reference tool. Do not make any diet plans based on this information only, since the value of each nutrient in any product is given averaged and do not mirrors the exact number in product that you consume. ... -
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AnalyzeNNLS
MRI Multiple Echo T2 Analysis
...AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013). -
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In 2010, I reprogrammed the S7-200 emulator according to the manufacturer's specifications. The special feature I've added to it is the ability to connect to WinCC over the OPC protocol. Support: andrewpham.freelancer@gmail.com, live:andrewpham.freelancer, telegram:andrewphamvn Donate me: https://paypal.me/cnavn
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Phrasal
Statistical phrase-based machine translation system
...Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models. Developed by The Natural Language Processing Group at Stanford University, a team of faculty, postdocs, programmers and students who work together on algorithms that allow computers to process and understand human languages. Our work ranges from basic research in computational linguistics to key applications in human language technology, and covers areas such as sentence understanding, automatic question answering, machine translation, syntactic parsing and tagging, sentiment analysis. -
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.... _______________________________________ Please have also a look on our info page about other NetLogo extensions at http://www.uni-goettingen.de/en/315075.html. _______________________________________ Please cite this software in scientific publications as: Thiele, JC; Grimm, V (2010). NetLogo meets R: Linking agent-based models with a toolbox for their analysis. Environmental Modelling and Software, Volume 25, Issue 8: 972 - 974
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mwetoolkit
THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/
...The mwetoolkit can be applied to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). Up-to-date documentation and details about the tool can be found on the mwetoolkit website: http://mwetoolkit.sourceforge.net/ -
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codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: http://mbe.oxfordjournals.org/content/30/6/1270. codonPhyML is on the cover of MBE! Check this out...
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SingleSkin
Software for design single skin kites, speedgliders and paragliders
...Allow to print sew templates with scale 1:1 in A4 or other small printer's formats. Export sew templates to DXF. Main code writen in Javascript, GUI writen in Visual C# 2010 Express. -
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LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
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Xarxa Suport a la Reutilització
És com un EBAY d'ordinadors que refusa la transacció econòmica
La Xarxa de Suport a la Reutilització és com un EBAY d'ordinadors que refusa la transacció econòmica entre el donant d'equipament i el seu receptor, ha estat desenvolupada gràcies a la subvenció que els Ajuts puntCAT van atorgar a finals de 2010 a l'associació TxT-Tecnologia per a Tothom. Estàs interessat/da en muntar una plataforma semblant?, pots descarregar-te el codi d'aquest web i provar la XSR a www.xsr.cat. Ets un/a particular amb recursos insuficients o una entitat amb fi social i sense ànim de lucre? Necessites un o varis ordinadors? El portal XSR posa en contacte els donants d'equips amb els receptors amb l'objectiu de facilitar un aprofitament gratuït de maquinari informàtic de segona mà en bon estat. -
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TRAK MooD Template
Simple, no-nonsense description of Enterprise Architecture in MooD.
This template was developed by Vega Consulting Services to implement the TRAK enterprise architecture framework in MooD. It includes versions for MooD version 15 and the previous version 2010. -
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Efficient analysis of complex networks using hierarchical clustering. If you use Jerarca, please cite: Aldecoa R, Marín I (2010) Jerarca: Efficient analysis of complex networks using hierarchical clustering PLoS ONE 5(7): e11585
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IsItPrime
A small, basic, yet powerful and competent primality tester.
IsItPrime is a powerful, cross-platform, multi-threaded standalone application capable of testing massive numbers in several ways through a highly interactive and easily-understood user interface. As of version 2.0.0, IsItPrime and other NCPrime applications no longer require the Visual C++ 2010 Redistributable for Windows. All NCPrime applications released after 1 November 2012 use the Qt framework and thus require Qt libraries (included) for cross-platform compatibility. IsItPrime is in active development. -
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colonyzer image analysis software
Image analysis estimating cell density in arrayed microbial cultures
...Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer -
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CRUMp
A probabilistic prediction system of protein phosphorylation sites
...The sequence headers list the accession number of the protein sequence and the position numbers of known phosphorylation sites. Note that CRUMp may predict additional phosphorylation sites that have not been experimentally verified yet. The testing dataset is from Biswas et al. 2010, http://www.biomedcentral.com/1471-2105/11/273/additional. -
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Software for making Clusters of Orthologous Groups (featuring the new EdgeSearch algorithm). Latest ref: Kristensen DM, Kannan L, Coleman MK, Wolf YI, Sorokin A, Koonin EV, Mushegian A. Bioinformatics 2010.
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jaf_Kernels
Similarity Word-Sequence Kernels for Sentence Clustering toolkit
This project implements the techniques used in this paper: @INPROCEEDINGS{Andres10a, author = {Jesús Andrés-Ferrer and Germán Sanchis-Trilles and Francisco Casacuberta}, title = {Similarity Word-Sequence Kernels for Sentence Clustering}, booktitle = {Proceedings of the 8th International Workshop on Statistical Pattern Recognition}, year = {2010}, } This project depends on jaf_Utils: http://sourceforge.net/projects/jafutils/ Install it prior installation of jaf_Kernels. -
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Fast Unsupervised Sentence Aligner described in "Improved unsupervised sentence alignment for symmetrical and asymmetrical parallel corpora", COLING 2010. NEWS : release 1.0b : bug fixed (release1.0a deprecated).
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Software, components, utilities and XML schema model for automating the exchange of engineering data for the capital facility industry over the total facility life cycle, including design, procurement, construction, operations and maintenance. Detailed cfiXML guidelines and example data dictionaries for control valves, electric motors and pumps, including information on the HI 50.7-2010 Electronic Data Exchange for Pumping Equipment Standard, are available from the website.