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A tool that determines the winner of a vote through many different systems. Amongth the supported systems are: Borda count, Instant-runoff voting, Condorcet method, Ranked pairs, Cloneproof schwartz sequential droping / beatpath winner.
A program to calculate and create lists of possible variations (permutations) and selections (combinations) of a given set of elements. Creating the cartesian product of two sets is also possible.
The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover
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WordNetLMF converts WordNet (http://wordnet.princeton.edu/) lexicographer files into KYOTO-LMF, the LMF dialect used in the KYOTO project (http://www.kyoto-project.eu/).
ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
Cougar Squared is a new Java library for machine learning and data mining research, supporting research needs of the community. It is written by researchers for researchers. It extends the WEKA and YALE machine learning frameworks.
Volta is a suite of development tools for distributed, hard real-time systems. It includes Cascade, a control flow analysis tool for Java, and Clepsydra, a worst-case execution time analyzer. Also included is a Clepsydra plug-in for jEdit.
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Simulates data from a gaussian/beta/piecewise-linear species response function on an environmental gradient, with different sampling (error) distributions. See "Cline (biology)" on wikipedia.org.
A collection of compact, powerful programs and functions, written in C, for the analysis and transformation of data. No object or structure dependencies, no fancy interfaces - just good tools.
GISpatialNet is a Java-based tool for mapping network data (nodes and edges between them) to spatial coordinates; reformatting network and spatial data together; and calculating spatial network measures.
Install by saving to c:\ drive and typing the following in a commandline:
java -jar c:\GISpatialNet-0.9b.jar
haggies is an optimizing code generator. It can read in expressions in common notation and generate output for many programming languages including C/C++, Java, Fortran, Python and many others.
This is a MATLAB toolbox for the quality control and scoring of EMAP and SGA genetic interaction data. It includes a graphical user interface and some automatic plot-generating tools.
Data mining tool for sequences (e.g. trajectories on a map, visited web pages, etc.) that creates a succinct description of the sequences, given a taxonomy (e.g. regions and sub-regions in the map, categories and sub-categories of pages, etc.).
A Java package that provides several computations related to the edit distance of strings. Other than the basic Levenshtein, this algorithm can rearange words when comparing. The class can also provide details of how words could be transformed.
A simple program that solves linear equation systems. As of now only numerical coefficients are supported. The program is very simple and not suited for big matrices, since it uses laplace's method.
OSM XML to CSV conversion. POI only, polygons (and polylines, but not recommended) are approximated by centroid. Result is a 3-column table with lon, lat and value (for a particular key to be chosen beforehand).
Porcupine2 is a small wearable sensory unit for logging motion data and doing low-level activity recognition. The project includes electronic schematics for the hardware, software for the microcontroller and client-side software for hardware-interaction.
Covered is a Verilog code coverage utility using VCD/LXT/FST dumpfiles (or VPI interface) and the design to generate line, toggle, memory, combinational logic, FSM state/arc and assertion coverage report metrics viewable via GUI or ASCII format.
This project is ported to github and can be found at:
https://github.com/chiphackers/covered
A set of commandline tools to extract, manipulate, and present multidimensional data. These tools are targeted specifically at summarizing results of simulation experiments.
This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
Methods and testing of methods for automatic analysis of in situ cyclic
voltammetry data.
This, at least initially, is the code from my masters thesis, which was
done as a contribution to a larger project called Aevum. Aevum is being
developed at t
An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.