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  • 1
    IMPORTANT: The project moved over to github! You can find it at: https://github.com/exhuma/python-cluster
    Downloads: 0 This Week
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  • 2
    Java & MPEG-7 based tools for annotation and retrieval of digital photos and images (Caliph & Emir). LIRE has moved to https://github.com/dermotte/lire. Caliph & Emir have moved to https://github.com/dermotte/CaliphEmir.
    Downloads: 0 This Week
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  • 3
    Incremental Scenario Testing Tool
    IST helps test teams managing complexity by adaptively selecting and prioritizing the test cases according to past test results. ISTT guides the testers through a test session with high-level test scenarios generated on the fly.
    Downloads: 0 This Week
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  • 4
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
    Downloads: 0 This Week
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    JActor

    JActor

    High Performance, Lock Free Java Actors

    ...JActor achieves its speed, in part, by almost always executing synchronously--though it is easy enough to force asynchronous processing when needed. JActor is divided into several GitHub projects: JActor - https://github.com/laforge49/JActor JID - https://github.com/laforge49/JID JFile - https://github.com/laforge49/JFile JANetty - https://github.com/kumarshantanu/JANetty
    Downloads: 0 This Week
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  • 6
    OGEMA allows software applications aiming at energy management and energy efficiency to be executed on an embedded computer (the “Gateway”) connected to building automation systems. OGEMA wiki https://www.ogema-source.net/wiki/
    Downloads: 0 This Week
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  • 7
    jHepWork

    jHepWork

    jHepWork was a name of the DataMelt program in 2005-20013

    ...The program is fully multiplatform (100% Java) and integrated with the Jython (Python) scripting language. Currently the project is known under the name DataMelt (https://datamelt.org)
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  • 8
    THIS PROJECT MIGRATED TO GITHUB https://github.com/cosmo-guffa/play-svg A great thanks to SF.net for hosting up until now... it's nothing personal, this just isn't the right tool for the job ;) Project description: pLAySVG is a python library for the development and manipulation of SVG vector graphics through scripting. pLAySVG makes it easy to create graphics based on geometric relationships.
    Downloads: 0 This Week
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  • 9
    The C# RTree project aims to maintain a C# version of the RTree spatial indexing algorithm. Ported from https://sourceforge.net/projects/jsi
    Downloads: 0 This Week
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  • 10
    NeedlemanWunsch

    NeedlemanWunsch

    Fast global sequence alignment for the masses!

    MOVED TO GITHUB: https://github.com/noporpoise/seq-align Global optimal sequence alignment using the Needleman-Wunsch algorithm. Aligns DNA, RNA, protein sequence and more! See our sister project local alignment using Smith-Waterman: http://sourceforge.net/projects/smithwaterman/
    Downloads: 21 This Week
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  • 11

    multipsq

    Analysis of pyrograms form multiplex pyrosequencing experiments

    A software for the classification of organisms based on results from multiplex pyrosequencing algorithms performed on the Pyro-Mark ID System (Qiagen). The assays can be designed using the software mpsqed available from https://sourceforge.net/projects/mpsqed/ Pyrosequencing can be applied for Single-Nucleotide-Polymorphism (SNP)-based pathogen typing or for providing sequence information of short DNA stretches. However, for some pathogens molecular typing cannot be performed relying on a single SNP or short sequence stretch, necessitating the consideration of several genomic regions. ...
    Downloads: 0 This Week
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  • 12
    ox_black_rhino

    ox_black_rhino

    black_rhino is a multi-agent simulator for financial network analysis

    This is the outdated code of black_rhino. The new version is maintained and hosted on github. Please see https://github.com/cogeorg/black_rhino
    Downloads: 0 This Week
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  • 13
    A C++ library for Quadratic Programming which implements the Goldfarb-Idnani active-set dual method. At present it is limited to the solution of strictly convex quadratic programs. The project has moved to GitHub (https://github.com/liuq/QuadProgpp).
    Downloads: 0 This Week
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  • 14
    CirclePack

    CirclePack

    An application for packing circles into a circle.

    It uses two different solutions: - placing of circles closest to the center from the largest to smallest, see brianshaler on github https://github.com/brianshaler/Circle-Packing-in-Processing - simulation "real" world with use of a Java Physics Engine JBox2D, see http://www.jbox2d.org
    Downloads: 0 This Week
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  • 15

    Topographica

    Simulation software for brain modelling

    ...Topographica helps neuroscientists and computational scientists simulate and understand how topographic maps contribute to brain function. Topographica is now primarily maintained at github.com; see https://github.com/ioam/topographica for recent updates and releases.
    Downloads: 0 This Week
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  • 16
    OsiriX - moved to Github
    The project has moved to GitHub: https://github.com/pixmeo/osirix
    Downloads: 1 This Week
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  • 17
    Liowsn Project

    Liowsn Project

    Remastered operating system for WSN

    ...The operating system is Ubuntu 9.10 remastered and it contains several tools for simulation and testing installed to work with WSN. Discussion Group: http://groups.google.com/group/liowsn-users User manual: https://dl.dropbox.com/u/4912938/LiowsnManual_EN.pdf (English Version) https://dl.dropbox.com/u/4912938/LiowsnManual_PT.pdf (Portuguese Version)
    Downloads: 0 This Week
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  • 18

    Seurat

    A sequence analysis tool for normal/tumor DNA and RNA data.

    THIS IS NO LONGER THE HOME FOR SEURAT. PLEASE GO TO https://sites.google.com/site/seuratsomatic/ --- Seurat is an sequence analysis program for somatic mutation and allelic imbalance discovery in paired tumor and normal genome and transcriptome data.
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  • 19
    The Research Geographic Information Kernel developed by Charles Ehlschlaeger and team. NOTE: Project code has moved to https://github.com/chuckre/DigitalPopulations Documentation is at http://digitalpopulations.pbworks.com/w/page/26034597/FrontPage
    Downloads: 0 This Week
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  • 20
    OpenRDK (OPENsource Robot Development Kit) is a modular software framework that can be used by developers in their research in robotics and artificial intelligence. This project has been moved to https://github.com/madmage/openrdk
    Downloads: 0 This Week
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  • 21
    The pySpec project is a set of data analysis routines written in python for analysis of x-ray diffraction data produced by the SPEC X-Ray Diffraction and Data Acquisition software. This repo has moved to : https://github.com/stuwilkins/pyspec
    Downloads: 1 This Week
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  • 22
    Matlab Hyperspectral Toolbox
    Matlab Hyperspectral Toolbox - Toolbox of advanced algorithms for hyperspectral processing and exploitation. We have moved to github! https://github.com/isaacgerg/matlabHyperspectralToolbox
    Downloads: 0 This Week
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  • 23
    Javamony

    Javamony

    A Student's Approach to the Phylogenetic Problem

    Based on the not-so-successful Pysimony (https://sourceforge.net/projects/pysimony/), the same determined student takes another go at the phylogenetic problem. Javamony is invoked as follows: java -jar Javamony.jar [input.fasta] [random / stepwise (starting tree)] [# of bootstraps] [outgroup taxon #1] [outgroup taxon #2] ... Not meant as a competitive phylogenetic inference program, Javamony is an opportunity for me to acquire the Java language while learning to address and solve fundamental problems in phylogenetics. ...
    Downloads: 0 This Week
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  • 24
    OTforge
    We have moved to GitHub - https://github.com/OpenTopography/points2grid
    Downloads: 0 This Week
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  • 25

    colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    ...Forms part of the Quantitative Fitness Analysis (QFA) workflow: http://research.ncl.ac.uk/qfa/ Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: http://qfa.r-forge.r-project.org/ This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 http://dx.doi.org/10.1186/1471-2105-11-287 Addinall et al. 2011 http://dx.doi.org/10.1371/journal.pgen.1001362 Chang et al. 2011 http://dx.doi.org/10.1534/g3.111.000216 Banks et al. 2012 http://dx.doi.org/10.3791/4018 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster: https://github.com/CnrLwlss/Colonyzer
    Downloads: 0 This Week
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