Showing 52 open source projects for "tutorials"

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  • 1

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 100 This Week
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  • 2
    Cell Paint

    Cell Paint

    cellPAINT allows users to create living illustrations of biology.

    ...There are currently several prototypes available: --cellPAINT_coronavirus includes a newly-redesigned user interface, and molecular building blocks for coronavirus, blood plasma, and a simple human cell --cellPAINT_exo includes hand-painted sprites created by Julia Jimenez during an internship, and also allows input of custom sprites through Mesoscope --cellPAINT_VR is a 3D virtual reality version of cellPAINT, with molecular building blocks for a red blood cell cytoskeleton --cellPAINT_2D is the initial alpha release of cellPAINT, with building blocks for HIV, blood plasma, and a human T-cell. For more information and tutorials, see our website at https://ccsb.scripps.edu/cellpaint Please submit any bug or feature requests to our ticket page.
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    Downloads: 131 This Week
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  • 3
    Camino
    ...Download the latest version of the code by clicking the "Code" tab and then "Download Snapshot". The green download button will get the latest major change (updated less frequently). For tutorials and more information, visit http://camino.org.uk. CAMINO IS A RESEARCH TOOL ONLY AND SHOULD NOT BE USED FOR CLINICAL PURPOSES. In downloading the code you explicitly agree to this condition.
    Downloads: 1 This Week
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  • 4
    PyRobot

    PyRobot

    An Open Source Robotics Research Platform

    PyRobot is a high-level robotics API that simplifies controlling real and simulated robots through a consistent Python interface. Instead of fighting ROS internals, you call clear methods for things like base navigation, arm manipulation, and camera capture, and PyRobot handles the plumbing. It was built to make research repeatable on accessible platforms—most notably low-cost mobile manipulators—while still scaling to richer hardware. The library exposes canonical abstractions (base, arm,...
    Downloads: 0 This Week
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  • 5
    AI learning

    AI learning

    AiLearning, data analysis plus machine learning practice

    We actively respond to the Research Open Source Initiative (DOCX) . Open source today is not just open source, but datasets, models, tutorials, and experimental records. We are also exploring other categories of open source solutions and protocols. I hope you will understand this initiative, combine this initiative with your own interests, and do what you can. Everyone's tiny contributions, together, are the entire open source ecosystem. We are iBooker, a large open-source community, we-media, and online earning community, with a QQ group of more than 10,000 people and at least 10,000 subscribers. ...
    Downloads: 0 This Week
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  • 6

    FORTRAN Unit Test Framework (FRUIT)

    FORTRAN Unit Test Framework FRUIT - TDD in FORTRAN

    FORTRAN Unit Test Framework, written in FORTRAN 95. So that all FORTRAN features can be tested. FRUIT has assertion, fixture, setup, teardown, report, spec, driver generation. Rake used as build tool. Tutorials at http://fortranxunit.wiki.sourceforge.net The core testing part is in FORTRAN, this part can be used independent of the Ruby codes. The Ruby code is to make fixtures and reports easier. Rake is to build the project elegantly. This project also demonstrate a new way to build mixed language code in an alternative way than Make. ...
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    Downloads: 6 This Week
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  • 7

    Kinetic Model Builder

    GUI for building, simulating and optimizing kinetic models.

    ...For ion channels, this is useful for simulating dose-response or current-voltage curves both with and without a secondary stimulus (e.g. some drug). A series of video tutorials are available at https://www.youtube.com/watch?v=7I2XPkdOvCg&list=PL-J_lULjiFsCPL2pkz8_tFe_aJ4Fc8a8k&index=1.
    Downloads: 2 This Week
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  • 8
    3DimViewer

    3DimViewer

    3DimViewer is a lightweight 3D viewer of medical DICOM datasets.

    ...The viewer is multiplatform software written in C++ that runs on Windows, Mac OS X and Linux systems. 3DimViewer source codes are available on Bitbucket (https://bitbucket.org/3dimlab/3dimviewer). Video tutorials can be found on YouTube (https://www.youtube.com/playlist?list=PLCvwUmKRw9ZO4YexLKEXmw_2jPo-kXVRn).
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    Downloads: 83 This Week
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  • 9
    SocLab : the Sociology Laboratory
    ...This software is grounded on the works lead by Sibertin-Blanc and Roggero on the formalization of the Sociology of Organised Action [Crozier and Freidberg]. Visit the homepage of the project on soclabproject.wordpress.com for tutorials, examples and further theoretical position.
    Downloads: 2 This Week
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  • 10

    Abc-Map

    http://abc-map.fr

    Tutorials and help: http://abc-map.fr New version coming soon ! https://github.com/remipassmoilesel/abcmap2
    Downloads: 0 This Week
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  • 11
    Libre Mechanics

    Libre Mechanics

    Open Knowledge on engineering development.

    Libre Mechanics it’s an Open Knowledge project created to offer a useful platform of information related with the development and research of Mechanical Engineering themes and similar fields, higly related with the use of Open Source and Software Libre tools. Here you will find a wide variety of projects, publications and scientific material available as references for developing their own projects, also guides and tutorials that allow you to take advantage of free software tools available today. The four principal lines of work are: Design Analysis and Simulation Automation and Robotics Development
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    Downloads: 41 This Week
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  • 12
    The "ITALIAN Translations" is a project dedicated to the translation of any kind (Open Source, Creative Commons, Freeware) application, documentation, tutorials, etc, in the Italian Language. Anyone can request translations in the Italian Language.
    Downloads: 0 This Week
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  • 13

    mflab

    modflow laboratory

    Matlab based scripting to set up, run and analyze groundwater model using (different versions of) MODFLOW (+SWI), MODPATH6, MT3DMS and SEAWAT.
    Downloads: 0 This Week
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  • 14
    finFoil is an application to help amateur surfboard fin makers foil their fins properly. All downloads are moved to https://finfoil.io Check out the homepage for the latest news and tutorials: https://finfoil.io hrobeers
    Downloads: 0 This Week
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  • 15
    The Neurophysiological Biomarker Toolbox
    NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.
    Downloads: 1 This Week
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  • 16

    PyRate

    Bayesian Estimation of Speciation and Extinction from Fossil Data

    ...*Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual can be found here: https://github.com/dsilvestro/PyRate/tree/master/tutorials *
    Downloads: 0 This Week
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  • 17
    MattsMathTools

    MattsMathTools

    MathTools is an aid in preparing printed math tests.

    Matt's MathTools is a Java application designed as an aid in preparing printed math tests. It is easily embedded in other Java applications or it can be used alone as a single-user desktop app. It includes a scripting environment, numerous demonstration classes and several general utilities. A scripting tutorial is also available.
    Downloads: 0 This Week
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  • 18
    Meet#Web is flexible module-based web-solution for organizers of all sorts of meetings from local sessions to international conferences/workshops. Available options are paper submission/review, tutorials, hotel reservation form, invoicing, visa appliance form. Main features include web interface for setup/configuration, collaboration, export, statistics, file uploads, e-mail notifications.
    Downloads: 0 This Week
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  • 19

    TeachingDemos

    Bioinformatics related demos and tutorials using the R programming lan

    Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License
    Downloads: 0 This Week
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  • 20
    Protospacer

    Protospacer

    Rapid gRNA design and validation for CRISPR

    ...From here, users are able to evaluate potential off targeting, to export results in FASTA format or tabulated (e.g. for Microsoft Excel), and to connect to the Integrative Genomics Viewer (IGVref) and view target-sites in the context of genomic annotations, amino acid translations, and HT-Seq data (for off-target validation). We provide online video tutorials and a toy database from our main website.
    Downloads: 0 This Week
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  • 21
    Graphical Grammar Studio

    Graphical Grammar Studio

    An user friendly grammar tool for natural language processing tasks

    Full documentation with tutorials is included in the download package. Graphical Grammar Studio is a tool for applying grammars which behave as words acceptors/consumers and annotators. GGS grammars can be used to find and annotate sequences of words which respect certain conditions, in a given input. Its purpose is for creating NLP tools like phrase chunkers, named entity finders, pronoun co-reference solvers etc.
    Downloads: 0 This Week
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  • 22
    APLpy (the Astronomical Plotting Library in Python) is a Python module aimed at producing publication-quality plots of astronomical imaging data in FITS format. Visit http://aplpy.sourceforge.net/ for tutorials and documentation.
    Downloads: 0 This Week
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  • 23
    The Blue Obelisk is a group of scientists driven by a belief in Open Source, Open Standards and Open Data, expressed in code, data, algorithms, specifications, tutorials, demonstrations, articles and anything that helps get the message across.
    Downloads: 0 This Week
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  • 24
    This project aims to provide open source software implementing the Wedge algorithm for the estimation of parameters in dynamical systems models. This project also seeks to create tutorials and resources for those using Wedge.
    Downloads: 0 This Week
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  • 25
    Java API for implementing any kind of Genetic Algorithm and Genetic Programming applications quickly and easily. Contains a wide range of ready-to-use GA and GP algorithms and operators to be plugged-in or extended. Includes Tutorials and Examples.
    Downloads: 0 This Week
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