Showing 47 open source projects for "2010"

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  • 1
    FragGeneScan
    ...It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013.
    Downloads: 17 This Week
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  • 2

    BIGSdb

    Software for storing and analysing bacterial sequence data

    ...The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). You can report bugs or make enhancement requests using the issues tracker at https://github.com/kjolley/BIGSdb. The source code is also mirrored there.
    Downloads: 0 This Week
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  • 3
    Watershed Districts

    Watershed Districts

    Creates voting districts using watershed boundaries.

    Uses the USGS Watershed Boundary Dataset and the 2010 US Census data to create representational voting districts with equivalent population.
    Downloads: 0 This Week
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  • 4

    mapska

    The Murder Accountability Project's Serial Killer Algorithm

    ...Download SHR76_19.csv (23/03/2021) - https://www.dropbox.com/s/ye37woe6et05qgs/SHR76_19.csv.zip?dl=1 For information on this algorithm and the Murder Accountability Project please visit: www.murderdata.org. Algorithm: Copyright (c) 2010, 2016 and 2017 - Murder Accountability Project. License: GNU General Public License (GPL) version 3.
    Downloads: 0 This Week
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  • 5
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data using GSA-SNP2", Nucleic Acids Research, Vol. 46(10), e60(2018)...
    Downloads: 2 This Week
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  • 6
    raxmlGUI
    RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/ raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood. A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI:...
    Downloads: 13 This Week
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  • 7
    ...It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
    Downloads: 0 This Week
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  • 8

    Nutrition Tables

    Nutrition Investigator

    This Nutrition Software consists of easy modifiable tables of selected food nutrients in one file, helps to make an individual diet. The information in this file was obtained from: Source (or Adapted from, as appropriate): Canadian Nutrient File, Health Canada, 2010 and other sources. This file gives an idea of which nutrient could be more likely found in fair quantities in some product. Use that file as a reference tool. Do not make any diet plans based on this information only, since the value of each nutrient in any product is given averaged and do not mirrors the exact number in product that you consume. ...
    Downloads: 0 This Week
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  • 9

    AnalyzeNNLS

    MRI Multiple Echo T2 Analysis

    ...AnalyzeNNLS creates a T2 distribution from the averaged decay data. Regional fractions and geometric T2 times can be determined. Please reference: Bjarnason TA, Mitchell JR. JMR 206:200-4 (2010). Temporal Phase Correction included in version 2.5. If you use this functionality, please reference: Bjarnason TA, Laule C, Bluman J, Kozlowski P. JMR 232:22-31 (2013).
    Downloads: 0 This Week
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  • 10
    In 2010, I reprogrammed the S7-200 emulator according to the manufacturer's specifications. The special feature I've added to it is the ability to connect to WinCC over the OPC protocol. Support: andrewpham.freelancer@gmail.com, live:andrewpham.freelancer, telegram:andrewphamvn Donate me: https://paypal.me/cnavn
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    Downloads: 44 This Week
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  • 11
    Phrasal

    Phrasal

    Statistical phrase-based machine translation system

    ...Distinctive features include: providing an easy to use API for implementing new decoding model features, the ability to translating using phrases that include gaps (Galley et al. 2010), and conditional extraction of phrase-tables and lexical reordering models. Developed by The Natural Language Processing Group at Stanford University, a team of faculty, postdocs, programmers and students who work together on algorithms that allow computers to process and understand human languages. Our work ranges from basic research in computational linguistics to key applications in human language technology, and covers areas such as sentence understanding, automatic question answering, machine translation, syntactic parsing and tagging, sentiment analysis.
    Downloads: 0 This Week
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  • 12
    .... _______________________________________ Please have also a look on our info page about other NetLogo extensions at http://www.uni-goettingen.de/en/315075.html. _______________________________________ Please cite this software in scientific publications as: Thiele, JC; Grimm, V (2010). NetLogo meets R: Linking agent-based models with a toolbox for their analysis. Environmental Modelling and Software, Volume 25, Issue 8: 972 - 974
    Downloads: 0 This Week
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  • 13
    Virastyar

    Virastyar

    Virastyar is an spell checker for low-resource languages

    ...It stands upon the shoulders of many free/libre/open-source (FLOSS) libraries developed for processing low-resource languages, especially Persian and RTL languages Publications: Kashefi, O., Nasri, M., & Kanani, K. (2010). Towards Automatic Persian Spell Checking. SCICT. Kashefi, O., Sharifi, M., & Minaie, B. (2013). A novel string distance metric for ranking Persian respelling suggestions. Natural Language Engineering, 19(2), 259-284. Rasooli, M. S., Kahefi, O., & Minaei-Bidgoli, B. (2011). Effect of adaptive spell checking in Persian. In NLP-KE Contributors: Omid Kashefi Azadeh Zamanifar Masoumeh Mashaiekhi Meisam Pourafzal Reza Refaei Mohammad Hedayati Kamiar Kanani Mehrdad Senobari Sina Iravanin Mohammad Sadegh Rasooli Mohsen Hoseinalizadeh Mitra Nasri Alireza Dehlaghi Fatemeh Ahmadi Neda PourMorteza
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    Downloads: 367 This Week
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  • 14

    mwetoolkit

    THIS PROJECT MIGRATED TO https://gitlab.com/mwetoolkit/mwetoolkit3/

    ...The mwetoolkit can be applied to virtually any text collection, language, and MWE type. It is a command-line tool written mostly in Python. Its development started in 2010 as a PhD thesis but the project keeps active (see the SVN logs). Up-to-date documentation and details about the tool can be found on the mwetoolkit website: http://mwetoolkit.sourceforge.net/
    Downloads: 1 This Week
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  • 15
    LeScienze500
    Applicativo Linux per la ricerca degli articoli nei due DVD di Le Scienze, pubblicati nel settembre 2010. Visitate la home page: http://lescienze500.wordpress.com/ Distro: Ubuntu, Fedora, ArchLinux, Slackware, Suse ecc...
    Downloads: 0 This Week
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  • 16

    CUDAlign

    CUDAlign is a tool that aligns huge DNA sequences in CUDA capable GPUs

    ...Smith-Waterman Alignment of Huge Sequences with GPU in Linear Space. IPDPS 2011: 1199-1211 [3] Edans Sandes, Alba Melo. CUDAlign: using GPU to accelerate the comparison of megabase genomic sequences. PPOPP 2010: 137-146 The latest source code can be found in Github. See the MASA project at https://github.com/edanssandes/MASA-CUDAlign
    Downloads: 0 This Week
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  • 17

    P-VCD

    Content-Based Video Copy Detection

    ...The software has been described in some scientific papers, e.g. http://dx.doi.org/10.1109/ICME.2011.6012212 and http://dx.doi.org/10.1007/s11042-011-0915-x. This software is the result of my PhD at the University of Chile and the participation at TRECVID Content-Based Copy Detection (CCD) evaluation task 2010 and 2011. More details in http://www-nlpir.nist.gov/projects/tv2011/tv2011.html#ccd and in http://www-nlpir.nist.gov/projects/tvpubs/tv11.papers/prisma.pdf P-VCD has also been used at TRECVID tasks: Instance Search (INS) 2012-2013 and Multimedia Event Detection (MED) 2013. This project is currently supported by ORAND S.A.Chile (http://www.orand.cl/) and is partially funded by Conicyt PAI-781204026.
    Downloads: 0 This Week
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  • 18
    codonPhyML
    codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship. Our paper describing codonPhyML has been published in the journal "Molecular Biology and Evolution" (MBE). For more details, follow the link: http://mbe.oxfordjournals.org/content/30/6/1270. codonPhyML is on the cover of MBE! Check this out...
    Downloads: 2 This Week
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  • 19
    SingleSkin

    SingleSkin

    Software for design single skin kites, speedgliders and paragliders

    ...Allow to print sew templates with scale 1:1 in A4 or other small printer's formats. Export sew templates to DXF. Main code writen in Javascript, GUI writen in Visual C# 2010 Express.
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    Downloads: 40 This Week
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  • 20

    EMsieve

    A simple sieve/prefactor program for Eisenstein-Mersenne Primes

    ...After sieving, the Berrizbeitia-Iskra or a Proth test can be run; this is best implemented with FFT mod (3^3p+1) using GWNUM library. A sample implementation (a patch to the LLR program) is available from Batalov. [1] P.Berrizbeitia B.Iskra, 2010; http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.189.311 [2] OEIS: http://oeis.org/
    Downloads: 1 This Week
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  • 21

    CDPOPgui

    GUI Frontend for CDPOP

    ...Simulation begins with an initial homogeneous population and followed by divergence through time as functions of individual based movement, breeding and dispersal on a continuous cost surface. Acknowledgements Allen Warren developed the GUI.The citation for this program is: Landguth EL, Cushman SA (2010) CDPOP: A spatially-explicit cost distance population genetics program. Mol. Ecol. Res. 10, 156-161. Updates to the software, including natural selection, can be referenced with Landguth EL, Cushman SA, Johnson NA (2012) Simulating natural selection in landscape genetics. Molecular Ecology Resources, 12, 363-368.
    Downloads: 0 This Week
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  • 22
    ConoSorter

    ConoSorter

    A Large-scale Cone Snail Transcriptome/Proteome Analysis Program

    ConoSorter is a high-throughput standalone program that implements regular expressions and profile Hidden Markov Models (pHMMs) for large-scale identification and classification of precursor conopeptides into gene superfamilies and classes based on the ER signal, pro-, and mature conopeptide regions generated from raw next-generation transcriptomic or proteomic data. ConoSorter also generates a set of relevant additional information (frequency of protein sequences, length, number of...
    Downloads: 0 This Week
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  • 23
    LibreEngineering
    LibreEngineering - suite of instrumentation, electrical, mechanical, process engineering calculation and design programs and other tools. Licensed under GPL3. Written in Python with Qt toolkit.
    Downloads: 0 This Week
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  • 24
    Xarxa Suport a la Reutilització

    Xarxa Suport a la Reutilització

    És com un EBAY d'ordinadors que refusa la transacció econòmica

    La Xarxa de Suport a la Reutilització és com un EBAY d'ordinadors que refusa la transacció econòmica entre el donant d'equipament i el seu receptor, ha estat desenvolupada gràcies a la subvenció que els Ajuts puntCAT van atorgar a finals de 2010 a l'associació TxT-Tecnologia per a Tothom. Estàs interessat/da en muntar una plataforma semblant?, pots descarregar-te el codi d'aquest web i provar la XSR a www.xsr.cat. Ets un/a particular amb recursos insuficients o una entitat amb fi social i sense ànim de lucre? Necessites un o varis ordinadors? El portal XSR posa en contacte els donants d'equips amb els receptors amb l'objectiu de facilitar un aprofitament gratuït de maquinari informàtic de segona mà en bon estat.
    Downloads: 0 This Week
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  • 25
    TRAK MooD Template

    TRAK MooD Template

    Simple, no-nonsense description of Enterprise Architecture in MooD.

    This template was developed by Vega Consulting Services to implement the TRAK enterprise architecture framework in MooD. It includes versions for MooD version 15 and the previous version 2010.
    Downloads: 0 This Week
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